# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj09019.fasta.huge -Q ../query/FLJ00410.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00410, 305 aa vs ./tmplib.10216 library 2210689 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.7898+/- 0.004; mu= 12.6444+/- 0.269 mean_var=89.7403+/-19.408, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.135388 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0672 ( 824 res) hk02382 ( 824) 93 28.2 2 KIAA1256 ( 1676 res) hh15293 (1676) 95 28.9 2.4 KIAA0344 ( 2066 res) hg01568 (2066) 95 29.0 2.8 KIAA0290 ( 906 res) ha06644 ( 906) 89 27.5 3.7 KIAA1487 ( 650 res) fj07249 ( 650) 85 26.5 5.1 KIAA1547 ( 863 res) fh14154 ( 863) 85 26.6 6.2 KIAA0690 ( 1214 res) hk03594 (1214) 86 27.0 6.7 KIAA1582 ( 1740 res) fj05982s1 (1740) 86 27.2 8.5 KIAA0287 ( 1523 res) fg06332 (1523) 85 26.9 8.9 KIAA0515 ( 670 res) hg00183 ( 670) 79 25.3 12 KIAA1447 ( 1721 res) fh04686 (1721) 83 26.6 13 FLJ00238 ( 204 res) sj07412 ( 204) 72 23.4 14 KIAA1994 ( 1117 res) bh00052 (1117) 80 25.8 14 KIAA1286 ( 1214 res) hh11961(revised) (1214) 80 25.8 15 KIAA0268 ( 1193 res) ha07061 (1193) 79 25.6 17 KIAA0458 ( 1552 res) ef01252 (1552) 80 26.0 18 KIAA1787 ( 1564 res) fh19054 (1564) 79 25.8 20 FLJ00326 ( 122 res) sj01834 ( 122) 66 21.9 23 KIAA0200 ( 1042 res) ha02508 (1042) 76 25.0 24 KIAA1981 ( 862 res) fk03148(revised) ( 862) 75 24.7 24 KIAA1565 ( 1313 res) bf00184 (1313) 77 25.3 24 KIAA0197 ( 1314 res) ha03030 (1314) 77 25.3 24 KIAA1038 ( 496 res) fh02273 ( 496) 72 23.8 25 KIAA0008 ( 876 res) ha00171s2 ( 876) 74 24.5 27 KIAA1490 ( 749 res) fj08103 ( 749) 73 24.2 28 FLJ00119 ( 1455 res) as00119 (1455) 76 25.2 29 FLJ00227 ( 196 res) sj06355 ( 196) 66 22.2 31 KIAA1691 ( 558 res) fj00597s1 ( 558) 71 23.7 31 FLJ00160 ( 1696 res) sh06621 (1696) 76 25.2 32 KIAA0088 ( 943 res) ha01225 ( 943) 73 24.3 33 KIAA0702 ( 988 res) hg01814(revised) ( 988) 73 24.4 34 FLJ00066 ( 162 res) as00066 ( 162) 64 21.7 35 KIAA0269 ( 567 res) ha06751 ( 567) 70 23.5 35 KIAA0256 ( 1065 res) eg00512 (1065) 73 24.4 36 KIAA1203 ( 727 res) fg03361 ( 727) 71 23.8 36 KIAA0714 ( 1780 res) pf12310 (1780) 75 25.1 38 FLJ00386 ( 811 res) sj04204 ( 811) 71 23.9 39 KIAA1025 ( 1917 res) fg00971s1 (1917) 75 25.1 40 KIAA0614 ( 3006 res) hg01176s2 (3006) 77 25.7 41 FLJ00211 ( 213 res) sj05061 ( 213) 64 21.8 42 KIAA0217 ( 751 res) ha04826s1 ( 751) 70 23.6 42 KIAA1458 ( 612 res) fh16694 ( 612) 69 23.3 43 KIAA1588 ( 613 res) fj08823 ( 613) 69 23.3 43 FLJ00288 ( 217 res) sh02579 ( 217) 64 21.8 43 KIAA0565 ( 641 res) hh01904(revised) ( 641) 69 23.4 44 KIAA0657 ( 1237 res) hk01859s1 (1237) 72 24.3 45 FLJ00128 ( 1546 res) sh01521 (1546) 73 24.6 45 FLJ00204 ( 573 res) sj04432 ( 573) 68 23.1 47 FLJ00126 ( 878 res) sh01242 ( 878) 70 23.7 47 KIAA1542 ( 1654 res) hh03408 (1654) 73 24.6 47 >>KIAA0672 ( 824 res) hk02382 (824 aa) initn: 51 init1: 51 opt: 93 Z-score: 100.9 bits: 28.2 E(): 2 Smith-Waterman score: 93; 22.642% identity (50.314% similar) in 159 aa overlap (8-159:568-717) 10 20 30 FLJ004 HYKGTCWESSPDTPDASFSAPSGTGLLPTPITQQASL :. :.: : .::: :: : : . . KIAA06 AGRKVSCAPPSMQPPAPPAELAAPLPSPLPEQPLDSPAAPALSPSGLGLQPGP---ERTS 540 550 560 570 580 590 40 50 60 70 80 90 FLJ004 TSLAQGTGTTSAITFPEEQEDPRITRGQDEASA--GGIWGFIKGVAGNPMVKSVLDKTKH :. .. . :: .. .: ..: :.. :. : :.. .: . :.. : KIAA06 TTKSKELSPGSA-----QKGSPGSSQGTACAGTQPGAQPGAQPGASPSPS-QPPADQSPH 600 610 620 630 640 100 110 120 130 140 150 FLJ004 SVESMITTLDP--GMAPYIKSGGELDIVVTSNKEVKVAAVRDAFQEVFGLAVVVG---EA ..... : : .:. . :. : . . . :... . . .::. : . KIAA06 TLRKVSKKLAPIPPKVPFGQPGAMADQSAGQLSPVSLSPTPPSTPSPYGLSYPQGYSLAS 650 660 670 680 690 700 160 170 180 190 200 210 FLJ004 GQSNIAPQPVGYAAGLKGAQERIDSLRRTGVIHEKQTAVSVENFIAELLPDKWFDIGCLV :: . : : KIAA06 GQLSPAAAPPLASPSVFTSTLSKSRPTPKPRQRPTLPPPQPPTVNLSASSPQSTEAPMLD 710 720 730 740 750 760 >>KIAA1256 ( 1676 res) hh15293 (1676 aa) initn: 62 init1: 62 opt: 95 Z-score: 99.4 bits: 28.9 E(): 2.4 Smith-Waterman score: 95; 30.000% identity (58.182% similar) in 110 aa overlap (11-115:139-240) 10 20 30 FLJ004 HYKGTCWESSPDTPDASFS-APSGTGL----LPTPITQQA : .: .:.: : :::.: .:::.. .. KIAA12 MKQPPMFSPLISARFGMGSMPNLSIPQPLPPAAPITSLSSATSGTNLPPLMMPTPLVPSV 110 120 130 140 150 160 40 50 60 70 80 90 FLJ004 SLTSLAQGTGTTSAITFPEEQEDPRITRGQDEASAGGIWGFIKGVAGNPMVKSVLDKTKH : .:: .::.. .: . . .:.. . : :: : :. ..:..: . KIAA12 STSSLPNGTASLIQ-PLPIPYSSSTLPHGSSYSLMMG--GF--GGASIQKAQSLIDLGSS 170 180 190 200 210 220 100 110 120 130 140 150 FLJ004 SVESMITTLDPGMAPYIKSGGELDIVVTSNKEVKVAAVRDAFQEVFGLAVVVGEAGQSNI : : ..:. : .: :.: KIAA12 SSTSSTASLS-GNSP--KTGTSEWAVPQPTRLKYRQKFNTLDKSMSGYLSGFQARNALLQ 230 240 250 260 270 280 >>KIAA0344 ( 2066 res) hg01568 (2066 aa) initn: 110 init1: 56 opt: 95 Z-score: 98.3 bits: 29.0 E(): 2.8 Smith-Waterman score: 95; 24.096% identity (51.807% similar) in 166 aa overlap (10-170:1872-2020) 10 20 30 FLJ004 HYKGTCWESSPDTPDASFSAPSGTGLLPTPITQQASLTS ::.. : .:: .. : . .: ::.. KIAA03 ASVLHPQQTLHPPGNIPESGQNQLLQPLKPSPSS-DNLYSAFTSDGAISVP-----SLSA 1850 1860 1870 1880 1890 40 50 60 70 80 90 FLJ004 LAQGTGTTSAI-----TFPEEQEDPRITRGQDEASAGGIWGFIKGVAGNPMVKSVLDKTK .:::..:... . . . : .: .. . . . .. . : . : : . KIAA03 PGQGTSSTNTVGATVNSQAAQAQPPAMTSSRKGTFTDDLHKLVDNWARDAMNLS----GR 1900 1910 1920 1930 1940 1950 100 110 120 130 140 150 FLJ004 HSVESMITTLDPGMAPYIKSGGELDIVVTSNKEVKVAAVRDAFQEVFGLAVVVGEAGQSN .. .. .. :::: ... :.: : .::: : . : :. .:. .: KIAA03 RGSKGHMNYEGPGMARKFSAPGQLCISMTSNLG-GSAPISAAS------ATSLGHFTKSM 1960 1970 1980 1990 2000 160 170 180 190 200 210 FLJ004 IAPQPVGYAAGLKGAQERIDSLRRTGVIHEKQTAVSVENFIAELLPDKWFDIGCLVVEDP :: :. : ::: KIAA03 CPPQQYGFPATPFGAQWSGTGGPAPQPLGQFQPVGTASLQNFNISNLQKSISNPPGSNLR 2010 2020 2030 2040 2050 2060 >>KIAA0290 ( 906 res) ha06644 (906 aa) initn: 38 init1: 38 opt: 89 Z-score: 96.2 bits: 27.5 E(): 3.7 Smith-Waterman score: 89; 27.907% identity (52.326% similar) in 86 aa overlap (8-93:491-569) 10 20 30 FLJ004 HYKGTCWESSPDTPDASFSAPSGTGLLPTPITQQASL .:. :.:. . .:: . .: : : : : KIAA02 FDHEDFTGSSSLGFTSSPSPFSSSSPENVEDSGLDSPSHAAPGPSPDSWVPRPGTPQ-SP 470 480 490 500 510 40 50 60 70 80 90 FLJ004 TSLAQGTGTTSAITFPEEQEDPRITRGQDEASAGGIWGFIKGVAGNPMVKSVLDKTKHSV : . .: : ..: : ::. : :: ....::. .. . : : KIAA02 PSCRAPPPEARGIRAPPLPDSP-----QPLASSPGPWG-LEALAGGDLMPAPADPTAREG 520 530 540 550 560 570 100 110 120 130 140 150 FLJ004 ESMITTLDPGMAPYIKSGGELDIVVTSNKEVKVAAVRDAFQEVFGLAVVVGEAGQSNIAP KIAA02 LAAPPRRLRSRKVSCPLTRSNGDLSRSLSPSPLGSSAASTALERPSFLSQTGHGVSRGPS 580 590 600 610 620 630 >>KIAA1487 ( 650 res) fj07249 (650 aa) initn: 33 init1: 33 opt: 85 Z-score: 93.6 bits: 26.5 E(): 5.1 Smith-Waterman score: 85; 29.464% identity (58.036% similar) in 112 aa overlap (167-264:124-232) 140 150 160 170 180 190 FLJ004 FQEVFGLAVVVGEAGQSNIAPQPVGYAAGLKGAQERIDSLRRTGV-----IHEKQ-TAVS .:. : :..:...:. .:: :::. KIAA14 NREELLLESAMRLENKLTLLGATGIEDRLQEGVPESIEALHKAGIKIWMLTGDKQETAVN 100 110 120 130 140 150 200 210 220 230 240 FLJ004 VENFIAELLPD-KWFDIG------CLVVEDPVHGIHLETFTQATPVPLEFVQQA-QSLTP . : :: : : .. : .. . . .:. ::: : . . .. : .: KIAA14 IAYACKLLEPDDKLFILNTQSKDACGMLMSTILK-ELQKKTQALPEQVSLSEDLLQPPVP 160 170 180 190 200 210 250 260 270 280 290 300 FLJ004 QDYNLRWSGLLVTVGEVLEKSLLNVSRTDWHMAFTGMSRRQMIYSAARAIAGMYKQRLPP .: .:: .::..: :..:: .: KIAA14 RDSGLR-AGLIIT-GKTLEFALQESLQKQFLELTSWCQAVVCCRATPLQKSEVVKLVRSH 220 230 240 250 260 270 >>KIAA1547 ( 863 res) fh14154 (863 aa) initn: 71 init1: 46 opt: 85 Z-score: 92.2 bits: 26.6 E(): 6.2 Smith-Waterman score: 85; 22.436% identity (50.000% similar) in 156 aa overlap (81-231:413-554) 60 70 80 90 100 110 FLJ004 TFPEEQEDPRITRGQDEASAGGIWGFIKGVAGNPMVKSVLDKTKHSVESMITTLDPGMAP ...: .:: .... . :. ::. KIAA15 KKDAPTSPASVASSSSTPSSKTKDLGHNDKSSTPGLKSNTPTPRNDAPTPGTSTTPGLRS 390 400 410 420 430 440 120 130 140 150 160 FLJ004 YIKSGGELDIVVTSNKEVKVAAVRDAFQEVFGLAVVVGE-AGQSNIAPQPVGYAAGLKGA . :. . : .::. . : . . .:. : . : :: :: :: . ::. .: KIAA15 MPASALRTPISITSSYAAPFAMM--SHHEMNGSLTSPGAYAGLHNIPPQMSAAAAAAAAA 450 460 470 480 490 500 170 180 190 200 210 220 FLJ004 QERIDSLRRTGVI----HEKQTAVSVENFIAELLPDKWFDIGCLVVEDPVHGIHLETFTQ : . . :.. : . :... . .: . : :....:. . : KIAA15 YGR-SPMVSFGAVGFDPHPPMRATGLPSSLASIPGGK-----------PAYSFHVSADGQ 510 520 530 540 230 240 250 260 270 280 FLJ004 ATPVPLEFVQQAQSLTPQDYNLRWSGLLVTVGEVLEKSLLNVSRTDWHMAFTGMSRRQMI :::. KIAA15 MQPVPFPHDALAGPGIPRHARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQP 550 560 570 580 590 600 >>KIAA0690 ( 1214 res) hk03594 (1214 aa) initn: 34 init1: 34 opt: 86 Z-score: 91.5 bits: 27.0 E(): 6.7 Smith-Waterman score: 90; 21.453% identity (50.865% similar) in 289 aa overlap (18-281:59-332) 10 20 30 40 FLJ004 HYKGTCWESSPDTPDASFSAPSG-TGLLPTPITQQASLTSLAQGTGT :: ::: . : . . : : . : KIAA06 SAKLKRWKKGHSSDSNPAICRHRQAARSRFFSRPSGRSDLTVDAVKLHNELQSGSLRLGK 30 40 50 60 70 80 50 60 70 80 90 100 FLJ004 TSAITFPEEQEDPRITRGQDEASAGGIWGFIKGVAGNPMVK-SVLDK---TKHSVESMIT . : : :.: . : :.: :..:.. : : ... .. .... : KIAA06 SEAPETPMEEEAELVLT---EKSSG---TFLSGLSDCTNVTFSKVQRFWESNSAAHKEIC 90 100 110 120 130 140 110 120 130 140 150 160 FLJ004 TLDPGMAPYIKSGGELDIVVTSNKEVKVAAVRDAFQEVFGLAVVVGEAGQSNIAPQPVGY .. ... :.: : . .. : .: .: : :. :. :. .... . :. . KIAA06 AVLAAVTEVIRSQGGKE----TETEYFAALIRKAAQH--GVCSVL-KGSEFMFEKAPAHH 150 160 170 180 190 170 180 190 200 FLJ004 AAGLKGAQERIDSLRRTGVIHEKQTAVSVENFIAELLP--DKWFDIGC------------ :... :. :. ....: .: :.. . ... .::: . . .: KIAA06 PAAISTAKFCIQEIEKSGGSKEATTTLHMLTLLKDLLPCFPEGLVKSCSETLLRVMTLSH 200 210 220 230 240 250 210 220 230 240 250 260 FLJ004 -LVVEDPVHGIHLETFTQATP--VPLEFVQQAQSLTP-QDYNLRWSGL--LVTVGEVLEK ::. ....: .. .: : : .:: .: :: . : :.. .:.:: KIAA06 VLVTACAMQAFH--SLFHARPGLSTLSAELNAQIITALYDYVPSENDLQPLLAWLKVMEK 260 270 280 290 300 310 270 280 290 300 FLJ004 SLLNVSRTDWHMAFTGMSRRQMIYSAARAIAGMYKQRLPPRTV . .:. : .: ... . : KIAA06 AHINLVRLQWDLGLGHLPRFFGTAVTCLLSPHSQVLTAATQSLKEILKECVAPHMADIGS 320 330 340 350 360 370 >>KIAA1582 ( 1740 res) fj05982s1 (1740 aa) initn: 66 init1: 40 opt: 86 Z-score: 89.7 bits: 27.2 E(): 8.5 Smith-Waterman score: 86; 31.429% identity (50.000% similar) in 70 aa overlap (15-84:575-640) 10 20 30 40 FLJ004 HYKGTCWESSPDTPDASFSAPSGTGLLPTPITQQASLTSLAQGT :.. .:::: :. :.. : :. : . KIAA15 GSIMNSTNTSSVSGWVNAPPAAVPANTGWGDSNNKAPSGPGVWGDSISSTAVSTAAAAKS 550 560 570 580 590 600 50 60 70 80 90 100 FLJ004 GTTSAITFPEEQEDPRITRGQDEASAGGIWGFIKGVAGNPMVKSVLDKTKHSVESMITTL : : . .::: : :. . :: : .:: KIAA15 G--HAWSGAANQEDKSPTWGEPPKPKSQHWG--DGQRSNPAWSAGGGDWADSSSVLGHLG 610 620 630 640 650 660 110 120 130 140 150 160 FLJ004 DPGMAPYIKSGGELDIVVTSNKEVKVAAVRDAFQEVFGLAVVVGEAGQSNIAPQPVGYAA KIAA15 DGKKNGSGWDADSNRSGSGWNDTTRSGNSGWGNSTNTKANPGTNWGETLKPGPQQNWASK 670 680 690 700 710 720 >>KIAA0287 ( 1523 res) fg06332 (1523 aa) initn: 40 init1: 40 opt: 85 Z-score: 89.3 bits: 26.9 E(): 8.9 Smith-Waterman score: 85; 31.461% identity (53.933% similar) in 89 aa overlap (147-227:1368-1453) 120 130 140 150 160 170 FLJ004 ELDIVVTSNKEVKVAAVRDAFQEVFGLAVVVGEAGQSNI-APQPVGYA-----AGLKGAQ .::::: : : :: : : ::.. . KIAA02 EPEVEAAEPEVEAAEPNGEAEGPDGEAAEPIGEAGQPNGEAEQPNGDADEPDGAGIEDPE 1340 1350 1360 1370 1380 1390 180 190 200 210 220 FLJ004 ERIDSLRRTGVIHEKQTAVSVENFIAELLPDKWFDIGCLVVEDPVHGIH--LETFTQATP :: . . : .: . .. . .. :.. : . ::.: . : ::::..: KIAA02 ERAE--EPEGKAEEPEGDADEPDGVGIEDPEEGED-QEIQVEEPYYDCHECTETFTSSTA 1400 1410 1420 1430 1440 1450 230 240 250 260 270 280 FLJ004 VPLEFVQQAQSLTPQDYNLRWSGLLVTVGEVLEKSLLNVSRTDWHMAFTGMSRRQMIYSA KIAA02 FSEHLKTHASMIIFEPANAFGECSGYIERASTSTGGANQADEKYFKCDVCGQLFNDRLSL 1460 1470 1480 1490 1500 1510 >>KIAA0515 ( 670 res) hg00183 (670 aa) initn: 76 init1: 52 opt: 79 Z-score: 87.1 bits: 25.3 E(): 12 Smith-Waterman score: 79; 30.189% identity (54.717% similar) in 53 aa overlap (7-59:304-355) 10 20 30 FLJ004 HYKGTCWESSPDTPDASFSAPSGTGLLPTPITQQAS ::.::. :. : . .:.:. : : . :: KIAA05 DHHIQRAIGLSPMSFPTADLTLKMESARKAWENSPSLPEQSSPGGAGSGIQP-PSSVGAS 280 290 300 310 320 330 40 50 60 70 80 90 FLJ004 LTSLAQGTGTTSAITFPEEQEDPRITRGQDEASAGGIWGFIKGVAGNPMVKSVLDKTKHS .. : .: .: . : KIAA05 SGVNYSSFGGVSMPPMPVASVAPSASMPGSHLPPLYLDGHVFASQPRLVPQTIPQQQSYQ 340 350 360 370 380 390 305 residues in 1 query sequences 2210689 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:02:57 2009 done: Fri Feb 27 11:02:57 2009 Total Scan time: 0.450 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]