hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file: /cdna4/shimazu/full/sj/sj08543/interpro/cnk_1/seq.in
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Query: sj08543 1486
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ANK ankyrin repeats 642.2 1.7e-188 25
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ANK 1/25 218 247 .. 1 30 [] 8.2 3.7e+02
ANK 2/25 251 280 .. 1 30 [] 19.2 0.57
ANK 3/25 285 314 .. 1 30 [] 28.5 0.0009
ANK 4/25 318 347 .. 1 30 [] 34.1 1.9e-05
ANK 5/25 351 380 .. 1 30 [] 36.1 4.7e-06
ANK 6/25 385 414 .. 1 30 [] 29.2 0.00057
ANK 7/25 418 447 .. 1 30 [] 30.2 0.00028
ANK 8/25 451 480 .. 1 30 [] 25.2 0.0089
ANK 9/25 484 513 .. 1 30 [] 38.8 7.3e-07
ANK 10/25 518 547 .. 1 30 [] 23.5 0.029
ANK 11/25 548 577 .. 1 30 [] 31.0 0.00016
ANK 12/25 581 610 .. 1 30 [] 35.0 1e-05
ANK 13/25 633 662 .. 1 30 [] 28.7 0.00079
ANK 14/25 667 696 .. 1 30 [] 24.3 0.018
ANK 15/25 700 729 .. 1 30 [] 21.5 0.12
ANK 16/25 1087 1116 .. 1 30 [] 23.2 0.035
ANK 17/25 1120 1149 .. 1 30 [] 32.9 4.2e-05
ANK 18/25 1154 1183 .. 1 30 [] 22.3 0.069
ANK 19/25 1187 1216 .. 1 30 [] 30.2 0.00028
ANK 20/25 1222 1251 .. 1 30 [] 33.9 2.2e-05
ANK 21/25 1256 1285 .. 1 30 [] 26.9 0.0028
ANK 22/25 1289 1318 .. 1 30 [] 25.6 0.0069
ANK 23/25 1324 1353 .. 1 30 [] 23.2 0.036
ANK 24/25 1357 1386 .. 1 30 [] 34.3 1.7e-05
ANK 25/25 1390 1423 .. 1 30 [] 18.4 1
Alignments of top-scoring domains:
ANK: domain 1 of 25, from 218 to 247: score 8.2, E = 3.7e+02
*->dGrTpLHlAaengnlevvklLldkgadina<-*
+ L A++ g+++ v+ Lld+g ++n+
sj08543 218 VDTRSLAEACSDGDVNAVRKLLDEGRSVNE 247
ANK: domain 2 of 25, from 251 to 280: score 19.2, E = 0.57
*->dGrTpLHlAaengnlevvklLldkgadina<-*
+G + L lA++ g++e+++ Ll a++++
sj08543 251 EGESLLCLACSAGYYELAQVLLAMHANVED 280
ANK: domain 3 of 25, from 285 to 314: score 28.5, E = 0.0009
*->dGrTpLHlAaengnlevvklLldkgadina<-*
+ TpL+ A + g+l++vklLl ++ad+n
sj08543 285 GDITPLMAASSGGYLDIVKLLLLHDADVNS 314
ANK: domain 4 of 25, from 318 to 347: score 34.1, E = 1.9e-05
*->dGrTpLHlAaengnlevvklLldkgadina<-*
G+T+L +A++ g +++vk Ll++ga+i++
sj08543 318 TGNTALTYACAGGFVDIVKVLLNEGANIED 347
ANK: domain 5 of 25, from 351 to 380: score 36.1, E = 4.7e-06
*->dGrTpLHlAaengnlevvklLldkgadina<-*
+G+TpL+ Aa+ g++ev++ Lld+ga in
sj08543 351 NGHTPLMEAASAGHVEVARVLLDHGAGINT 380
ANK: domain 6 of 25, from 385 to 414: score 29.2, E = 0.00057
*->dGrTpLHlAaengnlevvklLldkgadina<-*
++L lA+++g+l++v++Ll++gad +
sj08543 385 FKESALTLACYKGHLDMVRFLLEAGADQEH 414
ANK: domain 7 of 25, from 418 to 447: score 30.2, E = 0.00028
*->dGrTpLHlAaengnlevvklLldkgadina<-*
+ +T+L+ A++ g++ev++lLld+ga +n+
sj08543 418 EMHTALMEACMDGHVEVARLLLDSGAQVNM 447
ANK: domain 8 of 25, from 451 to 480: score 25.2, E = 0.0089
*->dGrTpLHlAaengnlevvklLldkgadina<-*
+pL lAa+ g++e++ lL+++ga++++
sj08543 451 SFESPLTLAACGGHVELAALLIERGANLEE 480
ANK: domain 9 of 25, from 484 to 513: score 38.8, E = 7.3e-07
*->dGrTpLHlAaengnlevvklLldkgadina<-*
+G+TpL+ Aa++g++e+v lLl ga+ina
sj08543 484 EGYTPLMEAAREGHEEMVALLLAQGANINA 513
ANK: domain 10 of 25, from 518 to 547: score 23.5, E = 0.029
*->dGrTpLHlAaengnlevvklLldkgadina<-*
T+L lA++ g ev+ +L+++gadi++
sj08543 518 TQETALTLACCGGFSEVADFLIKAGADIEL 547
[output cut off at A = 10 top alignments]
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