hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/shimazu/full/sj/sj08543/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: sj08543 1486 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Ank Ankyrin repeat 676.1 1.8e-199 25 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Ank 1/25 218 250 .. 1 33 [] 3.0 93 Ank 2/25 251 283 .. 1 33 [] 16.9 0.47 Ank 3/25 285 317 .. 1 33 [] 32.2 1.2e-05 Ank 4/25 318 350 .. 1 33 [] 29.3 8.9e-05 Ank 5/25 351 383 .. 1 33 [] 40.2 4.7e-08 Ank 6/25 385 417 .. 1 33 [] 29.5 7.7e-05 Ank 7/25 418 450 .. 1 33 [] 31.9 1.5e-05 Ank 8/25 451 483 .. 1 33 [] 26.1 0.00081 Ank 9/25 484 516 .. 1 33 [] 50.4 4e-11 Ank 10/25 518 550 .. 1 33 [] 20.0 0.055 Ank 11/25 551 580 .. 1 33 [] 25.0 0.0017 Ank 12/25 581 613 .. 1 33 [] 39.2 9.3e-08 Ank 13/25 633 665 .. 1 33 [] 36.5 5.9e-07 Ank 14/25 667 699 .. 1 33 [] 24.7 0.0022 Ank 15/25 700 732 .. 1 33 [] 20.3 0.045 Ank 16/25 1087 1119 .. 1 33 [] 26.1 0.00083 Ank 17/25 1120 1152 .. 1 33 [] 37.5 3e-07 Ank 18/25 1154 1186 .. 1 33 [] 26.7 0.00054 Ank 19/25 1187 1219 .. 1 33 [] 33.2 6.1e-06 Ank 20/25 1222 1254 .. 1 33 [] 36.5 6e-07 Ank 21/25 1256 1288 .. 1 33 [] 31.4 2.2e-05 Ank 22/25 1289 1321 .. 1 33 [] 32.3 1.1e-05 Ank 23/25 1324 1356 .. 1 33 [] 28.1 0.00021 Ank 24/25 1357 1389 .. 1 33 [] 45.1 1.6e-09 Ank 25/25 1390 1419 .. 1 33 [] 10.2 10 Alignments of top-scoring domains: Ank: domain 1 of 25, from 218 to 250: score 3.0, E = 93 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* L A++ g+++ v+ Ll+ G ++n + sj08543 218 VDTRSLAEACSDGDVNAVRKLLDEGRSVNEHTE 250 Ank: domain 2 of 25, from 251 to 283: score 16.9, E = 0.47 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G++ L lA++ g++e+++ Ll A++ + + sj08543 251 EGESLLCLACSAGYYELAQVLLAMHANVEDRGN 283 Ank: domain 3 of 25, from 285 to 317: score 32.2, E = 1.2e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* TPL+ A++ g+l++vklLl + Ad+n q sj08543 285 GDITPLMAASSGGYLDIVKLLLLHDADVNSQSA 317 Ank: domain 4 of 25, from 318 to 350: score 29.3, E = 8.9e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+L +A+ g +++vk Ll+ GA++ + sj08543 318 TGNTALTYACAGGFVDIVKVLLNEGANIEDHNE 350 Ank: domain 5 of 25, from 351 to 383: score 40.2, E = 4.7e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G TPL+ Aa+ g++ev++ Ll++GA +n + sj08543 351 NGHTPLMEAASAGHVEVARVLLDHGAGINTHSN 383 Ank: domain 6 of 25, from 385 to 417: score 29.5, E = 7.7e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +++L lA+ +g+l++v++Ll++GAd +++d sj08543 385 FKESALTLACYKGHLDMVRFLLEAGADQEHKTD 417 Ank: domain 7 of 25, from 418 to 450: score 31.9, E = 1.5e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + T+L+ A++ g++ev++lLl+ GA +n+ d sj08543 418 EMHTALMEACMDGHVEVARLLLDSGAQVNMPAD 450 Ank: domain 8 of 25, from 451 to 483: score 26.1, E = 0.00081 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* ++PL lAa+ g++e++ lL+++GA+l ++d sj08543 451 SFESPLTLAACGGHVELAALLIERGANLEEVND 483 Ank: domain 9 of 25, from 484 to 516: score 50.4, E = 4e-11 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPL+ Aa+ g++e+v lLl qGA++naq+ sj08543 484 EGYTPLMEAAREGHEEMVALLLAQGANINAQTE 516 Ank: domain 10 of 25, from 518 to 550: score 20.0, E = 0.055 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +T+L lA++ g ev+ +L+++GAd+ + sj08543 518 TQETALTLACCGGFSEVADFLIKAGADIELGCS 550 Ank: domain 11 of 25, from 551 to 580: score 25.0, E = 0.0017 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* TPL+ A++ g+le+vk+Ll GA+++a++ sj08543 551 ---TPLMEASQEGHLELVKYLLASGANVHATTA 580 Ank: domain 12 of 25, from 581 to 613: score 39.2, E = 9.3e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+L +A+++g+++v+ Ll++GAdl+ q d sj08543 581 TGDTALTYACENGHTDVADVLLQAGADLDKQED 613 Ank: domain 13 of 25, from 633 to 665: score 36.5, E = 5.9e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+TPL+ Aa+ g+l v++L+s+GA++n + sj08543 633 GGRTPLMKAARAGHLCTVQFLISKGANVNRATA 665 Ank: domain 14 of 25, from 667 to 699: score 24.7, E = 0.0022 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + T lA+ g+l vv+lLl +GAd+ ++ + sj08543 667 NDHTVVSLACAGGHLAVVELLLAHGADPTHRLK 699 Ank: domain 15 of 25, from 700 to 732: score 20.3, E = 0.045 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG T L Aa+ g+++vv++Ll++ ++ + sj08543 700 DGSTMLIEAAKGGHTNVVSYLLDYPNNVLSVPT 732 Ank: domain 16 of 25, from 1087 to 1119: score 26.1, E = 0.00083 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + +T+L lA+ g++e+v+ L+ + A + ++d+ sj08543 1087 NHDTALTLACAGGHEELVSVLIARDAKIEHRDK 1119 Ank: domain 17 of 25, from 1120 to 1152: score 37.5, E = 3e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* GfTPL lAa g++ vv+ Ll++G d+ aq sj08543 1120 KGFTPLILAATAGHVGVVEILLDKGGDIEAQSE 1152 Ank: domain 18 of 25, from 1154 to 1186: score 26.7, E = 0.00054 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +TPL lA++ g+ evv lLl +GA+ +++ sj08543 1154 TKDTPLSLACSGGRQEVVDLLLARGANKEHRNV 1186 Ank: domain 19 of 25, from 1187 to 1219: score 33.2, E = 6.1e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +TPL lAa+ g+++++k Ll++GA++n ++ sj08543 1187 SDYTPLSLAASGGYVNIIKILLNAGAEINSRTG 1219 Ank: domain 20 of 25, from 1222 to 1254: score 36.5, E = 6e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G +PL+lAa++g++ vklLl+ G d+naq sj08543 1222 LGISPLMLAAMNGHVPAVKLLLDMGSDINAQIE 1254 Ank: domain 21 of 25, from 1256 to 1288: score 31.4, E = 2.2e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + +T+L lA++ g++evv+lLl++ A++ ++ + sj08543 1256 NRNTALTLACFQGRAEVVSLLLDRKANVEHRAK 1288 Ank: domain 22 of 25, from 1289 to 1321: score 32.3, E = 1.1e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G TPL+ Aa+ g++ev + Ll++GAd+na sj08543 1289 TGLTPLMEAASGGYAEVGRVLLDKGADVNAPPV 1321 Ank: domain 23 of 25, from 1324 to 1356: score 28.1, E = 0.00021 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +T+L +Aa +g+++ ++lL+ +GA ++++++ sj08543 1324 SRDTALTIAADKGHYKFCELLIHRGAHIDVRNK 1356 Ank: domain 24 of 25, from 1357 to 1389: score 45.1, E = 1.6e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+TPL lA+ g+ +vv+lL+++GAd++a d+ sj08543 1357 KGNTPLWLASNGGHFDVVQLLVQAGADVDAADN 1389 Ank: domain 25 of 25, from 1390 to 1419: score 10.2, E = 10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* TPL+ A ++g+++vv++L++ ++n sj08543 1390 RKITPLMSAFRKGHVKVVQYLVK---EVNQFPS 1419 //