# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj08107.fasta.huge -Q ../query/FLJ00405.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00405, 402 aa vs ./tmplib.10216 library 2210592 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 3.7593+/-0.00347; mu= 19.2113+/- 0.235 mean_var=68.8362+/-15.116, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.154584 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0892 ( 621 res) hk08289 ( 621) 100 31.4 0.22 KIAA1627 ( 468 res) hh13711s1 ( 468) 86 28.1 1.6 KIAA1929 ( 410 res) fj08985(revised) ( 410) 82 27.1 2.8 KIAA0619 ( 1428 res) hg04117 (1428) 85 28.5 3.6 KIAA0813 ( 1618 res) pf00581 (1618) 84 28.4 4.5 KIAA1431 ( 891 res) fj00022 ( 891) 81 27.4 5.1 KIAA0521 ( 1050 res) hg01387 (1050) 81 27.5 5.6 KIAA1862 ( 1070 res) aj00563 (1070) 81 27.5 5.6 FLJ00106 ( 379 res) as00106 ( 379) 76 25.7 6.7 KIAA2008 ( 793 res) fj04470 ( 793) 78 26.6 7.5 KIAA1917 ( 702 res) fk00028 ( 702) 77 26.3 8.2 KIAA1437 ( 811 res) hk07206 ( 811) 76 26.2 10 KIAA1767 ( 1960 res) eg01735 (1960) 77 27.0 15 FLJ00032 ( 705 res) as00032 ( 705) 73 25.4 15 KIAA1955 ( 947 res) fk07007 ( 947) 74 25.8 16 KIAA1611 ( 813 res) fj12627 ( 813) 73 25.5 17 KIAA0044 ( 484 res) ha00492 ( 484) 71 24.8 17 KIAA0507 ( 73 res) hh00166 ( 73) 62 21.6 22 KIAA1939 ( 1082 res) ah01164 (1082) 72 25.5 23 FLJ00017 ( 291 res) as00017 ( 291) 67 23.6 23 KIAA0979 ( 1483 res) hj07056s1 (1483) 73 25.9 24 KIAA0644 ( 887 res) hj03618 ( 887) 71 25.1 24 KIAA0593 ( 2005 res) hj02824s1 (2005) 74 26.3 24 KIAA0605 ( 1031 res) hg03238a (1031) 71 25.2 26 KIAA0329 ( 1417 res) hg00872 (1417) 72 25.6 27 KIAA1149 ( 532 res) fg04087 ( 532) 68 24.2 28 KIAA0681 ( 538 res) hk02748 ( 538) 68 24.2 28 KIAA1093 ( 1727 res) fh18956 (1727) 72 25.8 30 KIAA1947 ( 608 res) fh23660 ( 608) 68 24.2 30 KIAA1679 ( 1536 res) fh22954 (1536) 71 25.5 32 KIAA1226 ( 704 res) fh04414s1 ( 704) 68 24.3 33 KIAA0532 ( 1637 res) hg03377 (1637) 71 25.5 34 KIAA1018 ( 1040 res) hj06112 (1040) 69 24.8 35 FLJ00398 ( 660 res) sj06617 ( 660) 67 24.1 37 KIAA1469 ( 662 res) fj01881 ( 662) 67 24.1 37 KIAA0491 ( 391 res) ha02617 ( 391) 65 23.3 37 KIAA1807 ( 702 res) fk00712 ( 702) 67 24.1 38 KIAA0764 ( 419 res) hk04750 ( 419) 65 23.3 39 KIAA1291 ( 1254 res) fh18869 (1254) 69 24.9 39 KIAA0140 ( 439 res) ha00520 ( 439) 65 23.4 40 FLJ00348 ( 778 res) sg00015 ( 778) 67 24.2 41 KIAA0285 ( 658 res) hh10127a ( 658) 66 23.8 43 KIAA0299 ( 1907 res) hf00368 (1907) 70 25.4 43 KIAA1486 ( 677 res) fj07162 ( 677) 66 23.9 44 KIAA1092 ( 1154 res) hk04417 (1154) 68 24.6 44 KIAA0529 ( 952 res) hg02898s1 ( 952) 67 24.3 46 FLJ00159 ( 567 res) sh06608 ( 567) 65 23.5 46 KIAA1454 ( 1265 res) fh15916 (1265) 68 24.7 46 KIAA1584 ( 995 res) fj06751 ( 995) 67 24.3 47 KIAA0730 ( 1004 res) hk03632 (1004) 67 24.3 47 >>KIAA0892 ( 621 res) hk08289 (621 aa) initn: 45 init1: 45 opt: 100 Z-score: 118.2 bits: 31.4 E(): 0.22 Smith-Waterman score: 100; 38.596% identity (61.404% similar) in 57 aa overlap (7-59:463-518) 10 20 30 FLJ004 MMGSWKHCLFSASLISALIFVFVYNTELWENKRFLR ::: .:.. .: : .. . : ::::: KIAA08 VYIREGNRHQEVLYSLLERINPDHSFPVSSHCLRAAAFYVRGLFSF-FQGRYNEAKRFLR 440 450 460 470 480 490 40 50 60 70 80 90 FLJ004 AAL--SNASLLAE--ACHQIFEGKVFYPTENALKTTLDEATCYEYMVRSHYVTETLSEEE .: ::: : . :: .. :..:: KIAA08 ETLKMSNAEDLNRLTACSLVLLGHIFYVLGNHRESNNMVVPAMQLASKIPDMSVQLWSSA 500 510 520 530 540 550 >>KIAA1627 ( 468 res) hh13711s1 (468 aa) initn: 47 init1: 47 opt: 86 Z-score: 102.6 bits: 28.1 E(): 1.6 Smith-Waterman score: 86; 26.829% identity (57.317% similar) in 82 aa overlap (47-128:61-135) 20 30 40 50 60 70 FLJ004 ALIFVFVYNTELWENKRFLRAALSNASLLAEACHQIFEGKVFYPTENALKTTLDEATCYE :.:. .. .. : :: . :::. : KIAA16 LAQQLGAESADSIGAVLNSKDEQREIAETRETCRASYDTSA--P--NAKRKYLDEGETDE 40 50 60 70 80 80 90 100 110 120 130 FLJ004 YMVRSHYVTETLSEEEAGFPLAYTVTIHKDFGTFERLFRAIYMPQNVYCVHLDQKATDAF .. . ....: ..: : :.:: .:: . ... :.: :: :. KIAA16 DKMEEYKDELEMQQDEENLP--YEEEIYKDSSTFLKGTQSLN-PHNDYCQHFVDTGHRPQ 90 100 110 120 130 140 140 150 160 170 180 190 FLJ004 KGAVKQLLSCFPNAFLASKKESVVYGGISRLQADLNCLEDLVASEVPWKYVINTCGQDFP KIAA16 NFIRDVGLADRFEEYPKLRELIRLKDELIAKSNTPPMYLQADIEAFDIRELTPKFDVILL 150 160 170 180 190 200 >>KIAA1929 ( 410 res) fj08985(revised) (410 aa) initn: 43 init1: 43 opt: 82 Z-score: 98.4 bits: 27.1 E(): 2.8 Smith-Waterman score: 83; 22.460% identity (49.733% similar) in 187 aa overlap (138-321:225-394) 110 120 130 140 150 160 FLJ004 GTFERLFRAIYMPQNVYCVHLDQKATDAFKGAVKQLLSCFPNAFLASKKESVVYGGISRL :: .: :: .: : . . . :..: : KIAA19 SLTGVPAQQRALAFEKGSVLFNIGALHTQIGA-RQDRSCTEGARRAMEAFQRAAGAFSLL 200 210 220 230 240 250 170 180 190 200 210 220 FLJ004 QADLNCLEDLVASEVPWKYVINTCG-QDFPLKTNREIVQYLKGFKGKNITPGVLPPDHAV . :.. . : . . :. ... . .: : :.: . :. . :. . KIAA19 R------ENFSHAPSPDMSAASLCALEQLMMAQAQECV-----FEGLS-PPASMAPQDCL 260 270 280 290 300 230 240 250 260 270 280 FLJ004 GRTKYVHQELLNHKNSYVIKTTKLKTPPPHDMVIYFGTAYVALTRDFANFVLQDQLALDL .. . . :: . : . . :: ::.: :: : . .. . . ..:. : KIAA19 AQLR-LAQEAAQVAAEYRLVHRTMAQPPVHDYVPVSWTALVHVKAEYFRSLAHYHVAMAL 310 320 330 340 350 360 290 300 310 320 330 340 FLJ004 LSWSKDTYSPDEHFWVTLNRIP--GVPGSMPNASWTGNLRAIKWSDMEDRHGGCHGHYVH . :.. : :. ..: : : :. .:. .: : KIAA19 CDGSREC--PP-HLPMVLPRPPRAGLTASLSPSSDRGRAPHARAGLPAAPHLL 370 380 390 400 410 350 360 370 380 390 400 FLJ004 GICIYGNGDLKWLVNSPSLFANKFELNTYPLTVECLELRHRERTLNQSETAIQPSWYF >>KIAA0619 ( 1428 res) hg04117 (1428 aa) initn: 48 init1: 48 opt: 85 Z-score: 96.4 bits: 28.5 E(): 3.6 Smith-Waterman score: 86; 22.137% identity (54.962% similar) in 131 aa overlap (194-316:98-219) 170 180 190 200 210 FLJ004 ISRLQADLNCLEDLVASEVPWKYVINTCGQDFP-LKTNREIVQYL-------KGFKGKNI ::: :. :..: ..: : ..: .. KIAA06 RKLEALIRDPRSPINVESLLDGLNSLVLDLDFPALRKNKNIDNFLNRYEKIVKKIRGLQM 70 80 90 100 110 120 220 230 240 250 260 270 FLJ004 TPGVLPPDHAVGRTKYVHQELLNHKNSYVIKTTKLKTPPPHDMVIYFGTAYVALTRDFAN ...:: . . .:. :: : . . :: . .:. .:. ::. KIAA06 KAEDYDVVKVIGRGAFGEVQLVRHKASQKVYAMKLLS--KFEMIKRSDSAFFWEERDIMA 130 140 150 160 170 180 280 290 300 310 320 330 FLJ004 FVLQDQLALDLLSWSKDTYSPDEHFWVTLNRIPGVPGSMPNASWTGNLRAIKWSDMEDRH :. .. ...:. .: :........ .:: :.. : KIAA06 FA-NSPWVVQLFYAFQD----DRYLYMVMEYMPG--GDLVNLMSNYDVPEKWAKFYTAEV 190 200 210 220 230 340 350 360 370 380 390 FLJ004 GGCHGHYVHGICIYGNGDLKWLVNSPSLFANKFELNTYPLTVECLELRHRERTLNQSETA KIAA06 VLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVHCDTAVGTPDYIS 240 250 260 270 280 290 >>KIAA0813 ( 1618 res) pf00581 (1618 aa) initn: 47 init1: 47 opt: 84 Z-score: 94.6 bits: 28.4 E(): 4.5 Smith-Waterman score: 84; 40.000% identity (55.556% similar) in 45 aa overlap (305-348:1439-1476) 280 290 300 310 320 330 FLJ004 NFVLQDQLALDLLSWSKDTYSPDEHFWVTLNRIPGVPGSMPNASWTGNLRAIKWSDMEDR : :: : .:.:.: :. . .: KIAA08 DFTKTQMKPGVVPGCEPCRKLYCLHGICQPNATPG-PMCHCEAGWVG-LHCDQPAD---- 1410 1420 1430 1440 1450 1460 340 350 360 370 380 390 FLJ004 HGGCHGHY-VHGICIYGNGDLKWLVNSPSLFANKFELNTYPLTVECLELRHRERTLNQSE : :::: ::: :. KIAA08 -GPCHGHKCVHGQCVPLDALSYSCQCQDGYSGALCNQAGALAEPCRGLQCLHGHCQASGT 1470 1480 1490 1500 1510 1520 >>KIAA1431 ( 891 res) fj00022 (891 aa) initn: 45 init1: 45 opt: 81 Z-score: 93.7 bits: 27.4 E(): 5.1 Smith-Waterman score: 81; 22.059% identity (51.471% similar) in 204 aa overlap (2-195:287-480) 10 20 30 FLJ004 MMGSWKHCLFSASLISALIFVFVYNTELWEN .:: ::. . .:.: : . : : KIAA14 IKNLAVDFRQQLHPAQKNFCKNGIWENNSDLGSAGHCVAKPDLVSLL----EQEKEPWMV 260 270 280 290 300 310 40 50 60 70 80 FLJ004 KRFLRAALSNASLLAEACHQIFEGKVFYP---TENALKTTLDEATCYEYMVRSHYVTETL :: : ..: ... .. ...: . : :. . .: :: .. : .. . : KIAA14 KRELTGSLFSGQRSVHETQELFPKQDSYAEGVTDRTSNTKLDCSSFRENWDSDYVFGRKL 320 330 340 350 360 370 90 100 110 120 130 140 FLJ004 SE-EEAGF---PLAYTVTIHKDFG-TFERLFRAIYMPQNVYCVHLDQKATDAFKGAVKQL . .:. : :.... :. :. :... : :. .. :: :..:. :. KIAA14 AVGQETQFRQEPITHNKTLSKERERTYNKSGRWSYLDDSEEKVH----NRDSIKNFQKSS 380 390 400 410 420 150 160 170 180 190 200 FLJ004 LSCFPNAFLASKK--ESVVYGGISRLQADLNCLEDLVASEVPWKYVINTCGQDFPLKTNR . ... :.:: . ...:. . . ..: :.: : ::. : KIAA14 VVIKQTGIYAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPYK--CNECGKAFSDGSSF 430 440 450 460 470 480 210 220 230 240 250 260 FLJ004 EIVQYLKGFKGKNITPGVLPPDHAVGRTKYVHQELLNHKNSYVIKTTKLKTPPPHDMVIY KIAA14 ARHQRCHTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPFDCIDCGKAFSDHIGLNQH 490 500 510 520 530 540 >>KIAA0521 ( 1050 res) hg01387 (1050 aa) initn: 81 init1: 81 opt: 81 Z-score: 93.0 bits: 27.5 E(): 5.6 Smith-Waterman score: 81; 40.741% identity (77.778% similar) in 27 aa overlap (197-223:819-845) 170 180 190 200 210 220 FLJ004 LQADLNCLEDLVASEVPWKYVINTCGQDFPLKTNREIVQYLKGFKGKNITPGVLPPDHAV .. .:: .. :. .: .: .::.:::: KIAA05 ERLEQERAELERQRQAYQHDLERLREAQRAVERERERLELLRRLKKQNTAPGALPPDTLA 790 800 810 820 830 840 230 240 250 260 270 280 FLJ004 GRTKYVHQELLNHKNSYVIKTTKLKTPPPHDMVIYFGTAYVALTRDFANFVLQDQLALDL KIAA05 EAQPPSHPPSFNGEGLEGPRVSMLPSGVGPEYAERPEVARRDSAPTESRLAKSDVPIQLL 850 860 870 880 890 900 >>KIAA1862 ( 1070 res) aj00563 (1070 aa) initn: 137 init1: 48 opt: 81 Z-score: 92.9 bits: 27.5 E(): 5.6 Smith-Waterman score: 81; 41.026% identity (56.410% similar) in 39 aa overlap (304-341:878-911) 280 290 300 310 320 330 FLJ004 ANFVLQDQLALDLLSWSKDTYSPDEHFWVTLNRIPGVPGSMPNASWTGNL-RAIKWSDME :.: : :: : .::: .: :. .:. KIAA18 AALAEKLDRLATALAGLAQEVATMRTQVNRLGRRPQGPGPMGQASWMWTLPRGPRWA--- 850 860 870 880 890 900 340 350 360 370 380 390 FLJ004 DRHGGCHGHYVHGICIYGNGDLKWLVNSPSLFANKFELNTYPLTVECLELRHRERTLNQS :: : : KIAA18 --HGPGHRHLPYWRQKGPTRPKPKILRGQGESCRAGDLQGLSRGTARRARPLPPDAPPAE 910 920 930 940 950 960 >>FLJ00106 ( 379 res) as00106 (379 aa) initn: 92 init1: 44 opt: 76 Z-score: 91.5 bits: 25.7 E(): 6.7 Smith-Waterman score: 76; 24.675% identity (54.545% similar) in 77 aa overlap (324-400:309-379) 300 310 320 330 340 350 FLJ004 YSPDEHFWVTLNRIPGVPGSMPNASWTGNLRAIKWSDMEDRHGGCHGHYVHGICIYGNGD .:.. .. . :: ::. :. . : FLJ001 SPQSSLPASRALATPPKLHTCEKCSTSIANQAVRIQEGRYRHPGCYTCADCGLNLKMRGH 280 290 300 310 320 330 360 370 380 390 400 FLJ004 LKWLVNSPSLFANKFELNTYPLTVECLELRHRERTLNQSETAIQPSWYF . : .. .. . .. :.. :: . : :..: . ::::: FLJ001 F-WE-DACAMEGMRLSLEALEGMVEGAKRRDRRKT----RRPIQPSW 340 350 360 370 >>KIAA2008 ( 793 res) fj04470 (793 aa) initn: 50 init1: 50 opt: 78 Z-score: 90.6 bits: 26.6 E(): 7.5 Smith-Waterman score: 78; 21.212% identity (54.545% similar) in 99 aa overlap (128-226:598-690) 100 110 120 130 140 150 FLJ004 AYTVTIHKDFGTFERLFRAIYMPQNVYCVHLDQKATDAFKGAVKQLLSCFPNAFLASKKE .: . .. :..:.: .. . .: : KIAA20 EFFRGKPTSREVFSQHPYAENFIGKPHVWTVDYNNSEEFEAAIKAIMRTQVDPYLPY--E 570 580 590 600 610 620 160 170 180 190 200 210 FLJ004 SVVYGGISRLQADLNCLEDLVASEVPWKYVINTCGQDFPLKTNREIVQYLKGFKGKNITP . : . :..: .. .:. . : .. . : : : . .:. .. ...: KIAA20 YTCEGMLERIHAYIQH-QDFCRAPDPALPEAHAPQSPFVLAPN---ATHLEWARNTSLAP 630 640 650 660 670 680 220 230 240 250 260 270 FLJ004 GVLPPDHAVGRTKYVHQELLNHKNSYVIKTTKLKTPPPHDMVIYFGTAYVALTRDFANFV :. :: ::. KIAA20 GAWPPAHALRAWLAVPGRACTDTCLDHGLICEPSFFPFLNSQDAFLKLQVPCDSTESEMN 690 700 710 720 730 740 402 residues in 1 query sequences 2210592 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:02:52 2009 done: Fri Feb 27 11:02:52 2009 Total Scan time: 0.510 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]