hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/shimazu/full/sj/sj08107/interpro/cnk_1/seq.in
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Query:  sj08107  402

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Branch   Core-2/I-Branching enzyme                      304.2    1.6e-87   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Branch     1/1      97   310 ..     1   237 []   304.2  1.6e-87

Alignments of top-scoring domains:
Branch: domain 1 of 1, from 97 to 310: score 304.2, E = 1.6e-87
                   *->iAYlrvVykdyeqrlerlLsasYHPqNqfCfhvDekSpeeFkeeLad
                      +AY ++++kd+   +erl++a+Y+PqN++C+h+D k+++ Fk     
     sj08107    97    LAYTVTIHKDFGT-FERLFRAIYMPQNVYCVHLDQKATDAFKG---- 138  

                   VrvrplascfpNVfVlgkeepvtsgGhsilaahlnClkiLlklpsWdWdY
                    +v++l scfpN f+++k e+v++gG+s+l+a+lnCl++L  +++  W+Y
     sj08107   139 -AVKQLLSCFPNAFLASKKESVVYGGISRLQADLNCLEDLVASEV-PWKY 186  

                   finLsghDyPlKTndELvrifksLnganNFidhtseiGwkeskrlKpdiv
                    in++g+D+PlKTn E+v+++k ++g+n+                +p ++
     sj08107   187 VINTCGQDFPLKTNREIVQYLKGFKGKNI----------------TPGVL 220  

                   dpklfknekednwkkhy.vv.dkliftatqkrplptplklfkGSawvvLS
                    p +   ++++++++ ++  ++++i t++ k+p+p+ + ++ G a+v+L+
     sj08107   221 PPDHAVGRTKYVHQELLnHKnSYVIKTTKLKTPPPHDMVIYFGTAYVALT 270  

                   RafVeymiegvdnlprtllqyltntyspDEgffhTlqcNpdl<-*
                   R f+++++  +d l+ +ll + ++tyspDE+f+ Tl ++p++   
     sj08107   271 RDFANFVL--QDQLALDLLSWSKDTYSPDEHFWVTLNRIPGV    310  

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