# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj07515.fasta.huge -Q ../query/FLJ00241.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00241, 286 aa vs ./tmplib.10216 library 2210708 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 3.9640+/-0.00356; mu= 17.5974+/- 0.240 mean_var=72.6826+/-15.917, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.150438 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0930 ( 348 res) hh03471 ( 348) 95 29.2 0.4 KIAA1507 ( 872 res) hk04967 ( 872) 84 27.3 3.6 KIAA0878 ( 687 res) hk07361 ( 687) 83 27.0 3.6 KIAA0438 ( 726 res) hj00450 ( 726) 83 27.0 3.7 KIAA1876 ( 803 res) pf01162s1 ( 803) 80 26.4 6.2 KIAA1682 ( 775 res) fh23774 ( 775) 79 26.2 7.1 KIAA1212 ( 802 res) fh00638s1 ( 802) 79 26.2 7.2 KIAA1160 ( 351 res) hj01067 ( 351) 72 24.2 13 KIAA1736 ( 1244 res) ph00725 (1244) 77 26.0 13 KIAA1440 ( 1377 res) hg02441b (1377) 77 26.1 14 KIAA1306 ( 1154 res) fh05845 (1154) 76 25.8 14 KIAA1441 ( 1258 res) hg02860b (1258) 76 25.8 15 KIAA1510 ( 1140 res) fg02934(revised) (1140) 75 25.6 16 KIAA0512 ( 710 res) hf00239 ( 710) 73 24.8 17 FLJ00158 ( 308 res) sh06588 ( 308) 69 23.5 18 KIAA1267 ( 1105 res) hj06438 (1105) 74 25.3 19 FLJ00141 ( 1326 res) sh04092 (1326) 74 25.4 21 KIAA0638 ( 1384 res) hj03347s1 (1384) 74 25.4 21 KIAA0540 ( 2041 res) pg00116 (2041) 75 25.9 23 KIAA0531 ( 999 res) hg03072 ( 999) 72 24.8 24 KIAA1530 ( 794 res) hj05130(revised) ( 794) 71 24.5 24 KIAA0479 ( 340 res) hh00797 ( 340) 67 23.1 26 FLJ00263 ( 764 res) sj01530 ( 764) 70 24.2 27 FLJ00341 ( 2760 res) sf00005 (2760) 75 26.1 27 FLJ00059 ( 477 res) as00059 ( 477) 68 23.5 28 FLJ00379 ( 487 res) sj00523 ( 487) 68 23.5 28 KIAA1940 ( 821 res) ah04227 ( 821) 70 24.3 28 FLJ00009 ( 540 res) as00009 ( 540) 68 23.6 30 KIAA0542 ( 1212 res) hg04325s1 (1212) 71 24.7 31 KIAA0559 ( 1212 res) hh01510 (1212) 71 24.7 31 KIAA1648 ( 112 res) fg05002 ( 112) 61 21.2 33 FLJ00100 ( 672 res) as00100 ( 672) 68 23.7 34 KIAA0194 ( 1435 res) ha02703 (1435) 71 24.8 34 FLJ00024 ( 195 res) as00024 ( 195) 63 21.9 34 KIAA0470 ( 1472 res) hg01996 (1472) 71 24.8 34 FLJ00010 ( 772 res) as00010 ( 772) 68 23.8 37 KIAA1134 ( 611 res) hj00883 ( 611) 67 23.5 37 KIAA1963 ( 488 res) ph00179 ( 488) 66 23.1 38 KIAA0977 ( 1207 res) hj07018 (1207) 69 24.3 41 KIAA0045 ( 2005 res) ha00941 (2005) 71 25.0 41 KIAA0476 ( 1626 res) ah04654 (1626) 70 24.7 42 KIAA1011 ( 3541 res) ff02850 (3541) 73 25.8 43 KIAA1447 ( 1721 res) fh04686 (1721) 70 24.7 44 KIAA0794 ( 490 res) hk06006 ( 490) 65 22.9 44 FLJ00193 ( 491 res) sj02629 ( 491) 65 22.9 44 FLJ00044 ( 1051 res) as00044 (1051) 68 24.0 44 KIAA0667 ( 1111 res) hk02319 (1111) 68 24.0 46 FLJ00204 ( 573 res) sj04432 ( 573) 65 23.0 48 KIAA1398 ( 1586 res) ha02572 (1586) 69 24.4 48 KIAA0813 ( 1618 res) pf00581 (1618) 69 24.5 49 >>KIAA0930 ( 348 res) hh03471 (348 aa) initn: 96 init1: 66 opt: 95 Z-score: 113.6 bits: 29.2 E(): 0.4 Smith-Waterman score: 95; 35.385% identity (63.077% similar) in 65 aa overlap (121-185:272-335) 100 110 120 130 140 150 FLJ002 DYCQPHAPGALLKAAFICAGIVHVHSELQLSEQLLRTFGGGFELHTWSELPHGSGLGTSS ::...: :: .::. ..: : ::. KIAA09 NRPAFFSPSLKRKVPRNRIAEMKKSHSANDSEEFFREDDGGADLHNATNLRSRSLSGTGR 250 260 270 280 290 300 160 170 180 190 200 210 FLJ002 ILAGTALAALQRAAGRVVGTEALIHAVLHLEQVLTTGGGWQDQVGGLMPGIKVGRSRAQL :.:. : :.:: : . : ...: :...:: KIAA09 SLVGSWLK-LNRADGNFLLYAHLTYVTLPLHRILTDILEVRQKPILMT 310 320 330 340 220 230 240 250 260 270 FLJ002 PLKVEVEEVTVPEGFVQKLNDHLLLVYTGKTRLARNLLQDVLRSWYARLPAVVQNAHSLV >>KIAA1507 ( 872 res) hk04967 (872 aa) initn: 48 init1: 48 opt: 84 Z-score: 96.4 bits: 27.3 E(): 3.6 Smith-Waterman score: 93; 25.532% identity (55.319% similar) in 141 aa overlap (122-239:555-695) 100 110 120 130 140 FLJ002 YCQPHAPGALLKAAFICAGIVHVHSELQLSEQLLRTFGGGFELHT----WSELPHGS--- :..:: : .: .. ..:: :. KIAA15 QPPETLLTLRPKHGGTTDVGEPLWPEPLGVEHFLREVGQFYEAESCLVEAGRLPAGQRRF 530 540 550 560 570 580 150 160 170 180 FLJ002 ----GLGTSSILAGTAL-----AALQRAAGRVVGTEALIHAVLHLEQVL----TTG--GG ::.. .:.: : ..:. . :.: .:. :. .. : :.: : KIAA15 AHFPGLASELLLTGLPLELIDGSTLSMPVRWVTGLLKELHVRLERRSRLVVLSTVGVPGT 590 600 610 620 630 640 190 200 210 220 230 240 FLJ002 WQDQVGGLMPGIKVGRSRAQLPLKVEVEEVTVPEGFVQKLN-DHLLLVYTGKTRLARNLL .. . . : :.. . ... : . .. .:: ::: : :. ::.:.. .: KIAA15 GKSTLLNTMFGLRFATGKSCGPRGAFMQLITVAEGFSQDLGCDHILVIDSGGLIGGALTS 650 660 670 680 690 700 250 260 270 280 FLJ002 QDVLRSWYARLPAVVQNAHSLVRQTEECAEGFRQGSHI KIAA15 AGDRFELEASLATLLMGLSNVTVISLAETKDIPAAILHAFLRLEKTGHMPNYQFVYQNLH 710 720 730 740 750 760 >>KIAA0878 ( 687 res) hk07361 (687 aa) initn: 63 init1: 39 opt: 83 Z-score: 96.3 bits: 27.0 E(): 3.6 Smith-Waterman score: 87; 27.536% identity (47.101% similar) in 138 aa overlap (8-133:140-268) 10 20 30 FLJ002 AEQVELPGPGQWVVAECPARVDFSGGWSDTPPLAYEL : . :: .::. :.. : . : . KIAA08 LVSGDESSLLLNAASTVARPVFTEYQASAFGNVKLVVHDCPVWDIFDSDWYTSRNL---I 110 120 130 140 150 160 40 50 60 70 80 FLJ002 GGA-VLGLAVRV----------DGRRPIGARARRIPEPELWLAVGPRQDEMTVKIVCR-C ::: .. . : :. :. :: : . ::: ::.: . .: : KIAA08 GGADIIVIKYNVNDKFSFHEVKDNYIPVIKRALN-SVPVIIAAVGTRQNE-ELPCTCPLC 170 180 190 200 210 220 90 100 110 120 130 140 FLJ002 LADLRDYCQPHAPGALLKAAFICAGIVHVHSELQLSEQLLRTFGGGFELHTWSELPHGSG .: : : . : : : . : ...:: .. . . ::: .: KIAA08 TSD-RGSCVSTTEGIQL-AKELGATYLELHSLDDF--YIGKYFGGVLEYFMIQALNQKTS 230 240 250 260 270 280 150 160 170 180 190 200 FLJ002 LGTSSILAGTALAALQRAAGRVVGTEALIHAVLHLEQVLTTGGGWQDQVGGLMPGIKVGR KIAA08 EKMKKRKMSNSFHGIRPPQLEQPEKMPVLKAEASHYNSDLNNLLFCCQCVDVVFYNPDLK 290 300 310 320 330 340 >>KIAA0438 ( 726 res) hj00450 (726 aa) initn: 65 init1: 40 opt: 83 Z-score: 96.1 bits: 27.0 E(): 3.7 Smith-Waterman score: 83; 24.365% identity (52.792% similar) in 197 aa overlap (95-286:121-311) 70 80 90 100 110 120 FLJ002 ELWLAVGPRQDEMTVKIVCRCLADLRDYCQPHAPGALLKAAFICAGIVHVHSELQLSEQL : .:: ... ..: :: ::. KIAA04 KENSSGSSPLDQVDSSLPSEPIFEKSETEIPTCGSALNQTTESSQSFVAVHH----SEEG 100 110 120 130 140 130 140 150 160 170 180 FLJ002 LRTFGGGFELHTWSELPHGSGL-GTSSILAGTALAALQRAAGRVVGTEALIHAVLHLEQV :.:.. .::. :: . : ..::. : ::. . : .. . :.: KIAA04 RDTLGSSTNLHNHSEGEYIPGACSASSVQNGIALVHTDSYDPD--GKHGEDNDHLQLSAE 150 160 170 180 190 200 190 200 210 220 230 240 FLJ002 LTTGGGWQDQVGGLMPGIKVGRSRAQLPLKVEVEEVT--VPEGFVQKLNDHLLLVYTGKT .. :. .:...:. . .. ...: :. : . : . : . . :. .: : KIAA04 VVEGSRYQESLGNTVFELENREAEAYTGLSPPVPSFNCEVRDEFEELDSVPLVKSSAGDT 210 220 230 240 250 260 250 260 270 280 FLJ002 RLARNLLQDVLRSWYARLPAVVQ-NAHSLVRQTEECAEGFRQG-SHI ..... :.. :: .. .. : : : ::::. : : .:: KIAA04 EFVHQNSQEIQRSSQDEMVSTKQQNNTSQERQTEHSPEDAACGPGHICSERNTNDREKNH 270 280 290 300 310 320 KIAA04 GSSPEQVVRPKVRKLISSSQVDQETGFNRHEAKQRSVQRWREALEVEESGSDDLLIKCEE 330 340 350 360 370 380 >>KIAA1876 ( 803 res) pf01162s1 (803 aa) initn: 75 init1: 52 opt: 80 Z-score: 92.1 bits: 26.4 E(): 6.2 Smith-Waterman score: 80; 27.273% identity (49.351% similar) in 77 aa overlap (7-82:272-344) 10 20 30 FLJ002 AEQVELPGPGQWVVAECPARVDFSGGWSDTPPLAYE : ::: . .:.: . : . :::. . KIAA18 NASYCPHCGEESSKAKEVTIAKADTTSTVTPVPGQEKGSALEGRADTTTGSAAGPPLSED 250 260 270 280 290 300 40 50 60 70 80 90 FLJ002 LGGAVLGLAVRV-DGRRPIGARARRIPEPELWLAVGPRQDEMTVKIVCRCLADLRDYCQP . : : .: .: : : . : : :. :: .. . .. KIAA18 --DKLQGAASHVPEGFDPTGPAGLGRPTPG--LSQGPGKETLESALIALDSEKPKKLRFH 310 320 330 340 350 100 110 120 130 140 150 FLJ002 HAPGALLKAAFICAGIVHVHSELQLSEQLLRTFGGGFELHTWSELPHGSGLGTSSILAGT KIAA18 PKQLYFSARQGELQKVLLMLVDGIDPNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN 360 370 380 390 400 410 >>KIAA1682 ( 775 res) fh23774 (775 aa) initn: 54 init1: 54 opt: 79 Z-score: 91.1 bits: 26.2 E(): 7.1 Smith-Waterman score: 79; 26.582% identity (54.430% similar) in 79 aa overlap (196-270:578-655) 170 180 190 200 210 220 FLJ002 RVVGTEALIHAVLHLEQVLTTGGGWQDQVGGLMPGIKVGRSRAQLPLKVEVEEVTVPEGF : :.. ..: :: : . . . .:: KIAA16 TVWDWSVQFEPKAQTLLKNPLYVEKPKLDKGQRKGMRFKHQR-QLSLPLTQSKSSPKRGF 550 560 570 580 590 600 230 240 250 260 270 280 FLJ002 VQKLNDHLLLVYTGK--TRL--ARNLLQDVLRSWYARLPAVVQNAHSLVRQTEECAEGFR .. .:::. :: ..: . . ::: .: .: . . :.:. KIAA16 FREETDHLIKNLLGKRISKLINSSDELQDNFREFYDSWHSKSTDYHGLLLPHIEGPEIKV 610 620 630 640 650 660 FLJ002 QGSHI KIAA16 WAQRYLRWIPEAQILGGGQVATLSKLLEMMEEVQSLQEKIDERHHSQQAPQAEAPCLLRN 670 680 690 700 710 720 >>KIAA1212 ( 802 res) fh00638s1 (802 aa) initn: 58 init1: 58 opt: 79 Z-score: 90.9 bits: 26.2 E(): 7.2 Smith-Waterman score: 79; 44.444% identity (58.333% similar) in 36 aa overlap (43-78:661-695) 20 30 40 50 60 70 FLJ002 VVAECPARVDFSGGWSDTPPLAYELGGAVLGLAVRVDGRRPIGARARRIPEPELWLAVGP ::: :.:. : :: .::. : :: KIAA12 SSSQENLLDEVMKSLSVSSDFLGKDKPVSCGLARSVSGKTPGDFYDRRTTKPEF-LRPGP 640 650 660 670 680 80 90 100 110 120 130 FLJ002 RQDEMTVKIVCRCLADLRDYCQPHAPGALLKAAFICAGIVHVHSELQLSEQLLRTFGGGF :. : : KIAA12 RKTEDTYFISSAGKPTPGTQGKIKLVKESSLSRQSKDSNPYATLPRASSVISTAEGTTRR 690 700 710 720 730 740 >>KIAA1160 ( 351 res) hj01067 (351 aa) initn: 49 init1: 49 opt: 72 Z-score: 86.6 bits: 24.2 E(): 13 Smith-Waterman score: 72; 37.778% identity (51.111% similar) in 45 aa overlap (50-90:308-350) 20 30 40 50 60 70 FLJ002 RVDFSGGWSDTPPLAYELGGAVLGLAVRVDGRRPIGARARRIPEPELWLAV--GPRQDEM : :: ::. : :. :: :: KIAA11 RKKMELLQKYASETLQAQSEEARRLLGCRSGTRP--ARSGSAPSPRATTAVPMGPSLPTT 280 290 300 310 320 330 80 90 100 110 120 130 FLJ002 TVKIV--CRCLADLRDYCQPHAPGALLKAAFICAGIVHVHSELQLSEQLLRTFGGGFELH . . . ::::. :: KIAA11 SPRGAPSCRCLTGLRM 340 350 >>KIAA1736 ( 1244 res) ph00725 (1244 aa) initn: 85 init1: 61 opt: 77 Z-score: 86.5 bits: 26.0 E(): 13 Smith-Waterman score: 77; 37.838% identity (59.459% similar) in 37 aa overlap (49-84:950-983) 20 30 40 50 60 70 FLJ002 ARVDFSGGWSDTPPLAYELGGAVLGLAVRVDGRRPIGAR-ARRIPEPELWLAVGPRQDEM : :: .. :: .::: : :: : . .. KIAA17 MVAQVFRLQQAHGGETSMRRVFNVLYPMPADQRRHVSINSARWLPEPGLGLAYGTNKGDL 920 930 940 950 960 970 80 90 100 110 120 130 FLJ002 TVKIVCRCLADLRDYCQPHAPGALLKAAFICAGIVHVHSELQLSEQLLRTFGGGFELHTW ..:: KIAA17 ---VICRPEALNSGVEYYWDQLNETVFTVHSNSRSSERPGTSRATWRTDRDMGLMNAIGL 980 990 1000 1010 1020 1030 >>KIAA1440 ( 1377 res) hg02441b (1377 aa) initn: 98 init1: 51 opt: 77 Z-score: 86.1 bits: 26.1 E(): 14 Smith-Waterman score: 77; 31.148% identity (54.098% similar) in 61 aa overlap (64-124:1310-1368) 40 50 60 70 80 90 FLJ002 AYELGGAVLGLAVRVDGRRPIGARARRIPEPELWLAVGPRQDEMTVKIVCRCLADLRDYC : . .: :: .:. . : : . : KIAA14 SSAEECCRNLAFSLALRSMQNSPSIAAAFLPTFMYCLGS-QDFEVVQTALRNLPEYALLC 1280 1290 1300 1310 1320 1330 100 110 120 130 140 150 FLJ002 QPHAPGALLKAAFICAGIVHVHSELQLSEQLLRTFGGGFELHTWSELPHGSGLGTSSILA : :: ..::. ::. . .. :.:: : KIAA14 QEHA-AVLLHRAFLVGMYGQMDPSAQISEALRILHMEAVM 1340 1350 1360 1370 160 170 180 190 200 210 FLJ002 GTALAALQRAAGRVVGTEALIHAVLHLEQVLTTGGGWQDQVGGLMPGIKVGRSRAQLPLK 286 residues in 1 query sequences 2210708 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:45:57 2009 done: Fri Feb 27 10:45:58 2009 Total Scan time: 0.440 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]