hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/shimazu/full/sj/sj07492/interpro/cnk_1/seq.in
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Query:  sj07492  504

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
GBP      Guanylate-binding protein, N-terminal domain   578.4   4.6e-170   1
GBP_C    Guanylate-binding protein, C-terminal domain   254.6    1.3e-72   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
GBP        1/1      39   301 ..     1   289 []   578.4 4.6e-170
GBP_C      1/1     303   504 .]     1   305 []   254.6  1.3e-72

Alignments of top-scoring domains:
GBP: domain 1 of 1, from 39 to 301: score 578.4, E = 4.6e-170
                   *->dgqlelNeeALeiLLlsesaitqpVvVVaivGlyRtGKSfLmNkLag
                      ++ql++N+eALeiL    saitqpVvVVaivGlyRtGKS+LmNkLag
     sj07492    39    NEQLKVNQEALEIL----SAITQPVVVVAIVGLYRTGKSYLMNKLAG 81   

                   YlynkdssdWlggnsekntGFslgsTveseTkGIwmWcvpflidhpnkpe
                                   kn+GFs++sTv+s+TkGIw+Wcvp    hpn+p+
     sj07492    82 ----------------KNKGFSVASTVQSHTKGIWIWCVP----HPNWPN 111  

                   vtLvLLDTeGlgDveksdnkndawIFALavLLSStfVYNsmgtIneqaLd
                   +tLvLLDTeGlgDvek+dnknd++IFALa+LLSStfVYN++++I++ a+d
     sj07492   112 HTLVLLDTEGLGDVEKADNKNDIQIFALALLLSSTFVYNTVNKIDQGAID 161  

                   qLhlVTELTelIRakssPdegrvadssefvsfFPdfvWtvRDFsLeLeld
                    Lh+VTELT+l++a++sPd +rv+d ++ +sfFPd+vWt+RDF+L Le+d
     sj07492   162 LLHNVTELTDLLKARNSPDLDRVEDPADSASFFPDLVWTLRDFCLGLEID 211  

                   ggaitgdeyLenaLklsqgqheelqnsNelRecIrkfFpkrkCFvfdrPg
                   g+ +t+deyLen+L+++qg+++++qn+N++R+cI+kfFpk+kCF+fd P+
     sj07492   212 GQLVTPDEYLENSLRPKQGSDQRVQNFNLPRLCIQKFFPKKKCFIFDLPA 261  

                   lkkkllpqleelredeLdpeFkeqldafcsyifspeskvktl<-*
                   ++kkl +qle+l++deL+peF++q+++fcsyifs +s++ktl   
     sj07492   262 HQKKL-AQLETLPDDELEPEFVQQVTEFCSYIFS-HSMTKTL    301  

GBP_C: domain 1 of 1, from 303 to 504: score 254.6, E = 1.3e-72
                   *->GGiiVTGprLatLVqtYvnAInSGsVPClesavtTLAQiENsaAVqk
                      GGi V+G+rL+ LV tYvnAI+SG++PC+e+av++LAQ+ENsaAVqk
     sj07492   303    GGIMVNGSRLKNLVLTYVNAISSGDLPCIENAVLALAQRENSAAVQK 349  

                   AiahYeeqMeQrleLPTetlQeLLdvHrdCEkEAlavFmenSFkNVDvkQ
                   AiahY +qM+Q+++LP etlQeLLd+Hr++E+EA++vFm+nSFk  Dv+Q
     sj07492   350 AIAHYDQQMGQKVQLPMETLQELLDLHRTSEREAIEVFMKNSFK--DVDQ 397  

                   kFqrkLvaqLeaakedFcrkNeeaSssrCqalLedLskdLeelikqGdfs
                    Fq++L  +L a+  d c++N eaSs++C+alL d++++Lee +kqG +s
     sj07492   398 SFQKELETLLDAKQNDICKRNLEASSDYCSALLKDIFGPLEEAVKQGIYS 447  

                   vpGGhrLfleavqeieakYkQvPrKGvkAsevLkefLqDILVHskedlaD
                   +pGGh Lf ++ +e++akY+  PrKG++A+evL+++L+     ske +  
     sj07492   448 KPGGHNLFIQKTEELKAKYYREPRKGIQAEEVLQKYLK-----SKESVSH 492  

                   sLlqtdqaLtlkekaiEaerNikkEaAEkaekllrEkQKrhEeamEakEk
                   ++lqtdqaLt+                                       
     sj07492   493 AILQTDQALTE--------------------------------------- 503  

                   syqEhkkqLtekmEserkqLmaEqnrmLEhklkeqeeLleeGFknestll
                            t                                        
     sj07492   504 ---------T---------------------------------------- 504  

                   ekeIselr<-*
                              
     sj07492     - --------    -    

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