# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj07486.fasta.huge -Q ../query/FLJ00400.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00400, 782 aa vs ./tmplib.10216 library 2210212 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 5.5763+/-0.00629; mu= 18.7801+/- 0.425 mean_var=240.4505+/-54.189, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.082711 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00136 ( 811 res) sh02543 ( 811) 370 57.6 7.3e-09 FLJ00070 ( 1382 res) as00070 (1382) 144 31.0 1.2 FLJ00201 ( 705 res) sj04110 ( 705) 140 30.0 1.3 KIAA0482 ( 1332 res) hj01880 (1332) 141 30.6 1.6 KIAA0775 ( 639 res) hk05255 ( 639) 132 29.0 2.3 KIAA1311 ( 889 res) fh11512 ( 889) 129 28.9 3.5 KIAA1076 ( 804 res) hj06779 ( 804) 128 28.7 3.6 KIAA1927 ( 1325 res) hj03131 (1325) 124 28.6 6.3 FLJ00247 ( 925 res) sj08552 ( 925) 121 28.0 6.9 KIAA1631 ( 1032 res) fh15959s1 (1032) 121 28.0 7.2 KIAA1522 ( 1044 res) fh14706(revised) (1044) 121 28.0 7.2 KIAA1139 ( 1124 res) hk00330 (1124) 121 28.1 7.5 KIAA0910 ( 1315 res) hg02207s1 (1315) 121 28.2 8.1 KIAA0669 ( 825 res) hk02346 ( 825) 115 27.1 11 KIAA1862 ( 1070 res) aj00563 (1070) 116 27.5 11 FLJ00287 ( 186 res) sh02562 ( 186) 106 24.9 11 FLJ00322 ( 659 res) sh08187 ( 659) 112 26.6 12 FLJ00160 ( 1696 res) sh06621 (1696) 117 27.9 13 KIAA1019 ( 2309 res) fg00188s1 (2309) 115 27.9 17 KIAA0495 ( 209 res) hg00106 ( 209) 101 24.4 18 KIAA1664 ( 920 res) fj04751s1 ( 920) 109 26.5 18 KIAA1668 ( 791 res) fh11717 ( 791) 108 26.3 19 FLJ00361 ( 366 res) sh04352 ( 366) 103 25.1 20 KIAA0975 ( 1528 res) hj06890 (1528) 110 27.0 21 KIAA1813 ( 673 res) ph00819b ( 673) 105 25.8 22 KIAA1187 ( 813 res) fk03027 ( 813) 105 25.9 24 KIAA1886 ( 655 res) fk01837 ( 655) 103 25.5 26 KIAA1471 ( 1421 res) fj02383s1 (1421) 107 26.6 26 FLJ00369 ( 700 res) sh06511 ( 700) 103 25.6 27 KIAA0306 ( 1451 res) hg00063 (1451) 107 26.6 27 FLJ00280 ( 440 res) sh01728 ( 440) 100 24.9 27 KIAA1375 ( 546 res) fj04426 ( 546) 101 25.2 28 KIAA0945 ( 797 res) hj04760 ( 797) 103 25.7 28 KIAA1157 ( 428 res) hh05862 ( 428) 99 24.7 29 FLJ00349 ( 146 res) sg00018 ( 146) 93 23.2 29 KIAA1271 ( 542 res) hk06527 ( 542) 100 25.0 30 KIAA1902 ( 1112 res) hj04383 (1112) 104 26.1 30 KIAA1443 ( 573 res) hj01820b ( 573) 99 25.0 34 KIAA0292 ( 1716 res) ha06353 (1716) 105 26.5 34 FLJ00072 ( 204 res) as00072 ( 204) 93 23.4 34 KIAA0886 ( 1233 res) hk07722 (1233) 103 26.0 34 KIAA0985 ( 697 res) hj08038 ( 697) 99 25.1 37 FLJ00406 ( 261 res) sj08464 ( 261) 93 23.6 38 KIAA1818 ( 1157 res) hg00622 (1157) 101 25.7 39 KIAA0800 ( 1521 res) hg03850s1 (1521) 102 26.1 41 KIAA0079 ( 1102 res) ha03543 (1102) 100 25.6 42 FLJ00034 ( 1343 res) as00034 (1343) 101 25.9 42 FLJ00252 ( 819 res) sj09394 ( 819) 98 25.1 43 KIAA1318 ( 1418 res) fh13683 (1418) 101 25.9 43 FLJ00104 ( 287 res) as00104 ( 287) 92 23.6 44 >>FLJ00136 ( 811 res) sh02543 (811 aa) initn: 582 init1: 224 opt: 370 Z-score: 252.4 bits: 57.6 E(): 7.3e-09 Smith-Waterman score: 645; 29.624% identity (55.188% similar) in 665 aa overlap (92-702:171-777) 70 80 90 100 110 120 FLJ004 SVSSERAPGVPEPEELWEAEMERLRGSGTPVRGLPYAMMDKRLIWQLREPAGVQTLRWQR .::.: .. .:: .::: . . .: : FLJ001 LDPTALEEEEKQSLLVKELQSLAVAQRDHMLRGMPLSLAEKR---SLREKSRTPRGKW-R 150 160 170 180 190 130 140 150 160 FLJ004 WQRRRQTVER---RLREAAQRLARGLGL-----------WEGALYEIGGLFGTGIRSYFT : : ::: : ..::: :. :: .::: ::... ::: FLJ001 GQPGSGGVCSCCGRLRYACVLALHSLGLALLSALQALMPWRYALKRIGGQFGSSVLSYFL 200 210 220 230 240 250 170 180 190 200 210 220 FLJ004 FLRFLLLLNLLSLLLTASFVLLPLVWLRPPDPGPTLNLTLQCPGSRQSPPGVLRFHNQLW ::. :: .: : ::: ..:.. : : . : ::: . : : FLJ001 FLKTLLAFNALLLLLLVAFIMGPQVAFPPALPGP----APVCTG---------------L 260 270 280 290 230 240 250 260 FLJ004 HVLTGRA-FTNTYLFYGAYRVG----PESSSV-------------YSIRLAYLLSPLACL ..::: . ::.: ..:: : . : .: . :.. :::: : .. FLJ001 ELLTGAGCFTHTVMYYGHYSNATLNQPCGSPLDGSQCTPRVGGLPYNMPLAYL-STVGVS 300 310 320 330 340 350 270 280 290 300 310 320 FLJ004 LLCFCGTL-RRMVKGLPQKTLLGQ--GYQAPLSAKVFSSWDFCIRVQEAATIKKHEISNE .. : :: :.... .. .:. : .: :: :::. . ..:. ... .: .. FLJ001 FFITCITLVYSMAHSFGESYRVGSTSGIHA---ITVFCSWDYKVTQKRASRLQQDNIRTR 360 370 380 390 400 410 330 340 350 360 370 FLJ004 FKVELEEGRRFQLMQQQTRAQTACRLLSYLRVNVLIGLLVVG-----AISA-IF--WATK .: : : .:: .. ...: : : :. :: .: :... .: . . FLJ001 LKELLAE---WQLRHSP---RSVCGRLRQAAVLGLVWLLCLGTALGCAVAVHVFSEFMIQ 420 430 440 450 460 380 390 400 410 420 430 FLJ004 YSQDNKEESLFLLLQYLPPGVIALVNFLGPLLFTFLVQLENYP-PNTEVNLTLIWCVVLK . .:...:.: : :..:.:. .: : :. :: . : :: ... ..:: FLJ001 SPEAAGQEAVLLVL----PLVVGLLNLGAPYLCRVLAALEPHDSPVLEVYVAICRNLILK 470 480 490 500 510 520 440 450 460 470 480 490 FLJ004 LASLGMFSVS-LGQTILCIGRDKSSCESYGYNVCDYQCWENSVGEELYKLSIFNFLLTVA :: :: . ::. . .: . ::::. ::.:::.. ...:.: . FLJ001 LAILGTLCYHWLGRRV---------------GVLQGQCWEDFVGQELYRFLVMDFVLMLL 530 540 550 560 500 510 520 530 540 550 FLJ004 FAFLVTLPRRLLVDRFSGRFWAWLEREEFLVPKNVLDIVAGQTVTWMGLFYCPLLPLLNS ... : :.. .. : .. :: . .:::... :::.::.:... :::: .. FLJ001 DTLFGELVWRIISEKKLKR----RRKPEFDIARNVLELIYGQTLTWLGVLFSPLLPAVQI 570 580 590 600 610 620 560 570 580 590 600 610 FLJ004 VFLFLTFYIKKYTLLKNSRASSRPFRASS-STFFFQLVLLLGLLLAAVPLGYVVSSIHSS . :.:.::.:: .:: : .: ::. :: :: :. :. . ..: ::: : :.: ... : FLJ001 IKLLLVFYVKKTSLLANCQAPRRPWLASHMSTVFLTLLCFPAFLGAAVFLCYAVWQVKPS 630 640 650 660 670 680 620 630 640 650 660 FLJ004 WDCGLF----TNYSAPWQVVPELVALGLPPIGQRA-LH-YLGSHAFSFPLLI--MLSLVL :: : : : : : .: : : : .. .: :: ..: : .:. .: :. FLJ001 STCGPFRTLDTMYEAGRVWVRHLEAAG-PRVSWLPWVHRYLMENTF-FVFLVSALLLAVI 690 700 710 720 730 740 670 680 690 700 710 720 FLJ004 TVCVSQTQANARAIHRLRKQLVWQVQEKWHLVEDLSRLLPEPGPSDSPGPKYPASQASRP . .. .... ..: :..:. . ..: :.. : FLJ001 YLNIQVVRGQRKVICLLKEQISNEGEDKIFLINKLHSIYERKEREERSRVGTTEEAAAPP 750 760 770 780 790 800 730 740 750 760 770 780 FLJ004 QSFCPGCPCPGSPGHQAPRPGPSVVDAAGLRSPCPGQHGAPASARRFRFPSGAEL FLJ001 ALLTDEQDA 810 >>FLJ00070 ( 1382 res) as00070 (1382 aa) initn: 95 init1: 66 opt: 144 Z-score: 104.7 bits: 31.0 E(): 1.2 Smith-Waterman score: 144; 37.234% identity (51.064% similar) in 94 aa overlap (686-767:2-87) 660 670 680 690 700 710 FLJ004 SFPLLIMLSLVLTVCVSQTQANARAIHRLRKQLVWQVQEKWHL-----VEDLSRLLPEPG . ::: . :.. :.. : :: :: FLJ000 VRGLVWASSWGWEVSALPAVQSASPRLP-PG 10 20 30 720 730 740 750 760 FLJ004 PSDSPGPKYPASQASRPQSFCPGCPCPGSPGH-------QAPRPGPSVVDAAGLRSPCPG : :: ::: :. :. :: : ::.:: .:::: . . :: :: FLJ000 PR---GPLPPASPAALPR--CP-LPSPGAPGPLLPSGAGPSPRPGAPPLPRV-LRPRMPG 40 50 60 70 80 770 780 FLJ004 QHGAPASARRFRFPSGAEL .:: FLJ000 PRGAAGGLAPEMRGAGAAGLLALLLLLLLLLGLGGRVEGGPAGERGAGGGGALARERFKV 90 100 110 120 130 140 >>FLJ00201 ( 705 res) sj04110 (705 aa) initn: 144 init1: 90 opt: 140 Z-score: 104.6 bits: 30.0 E(): 1.3 Smith-Waterman score: 140; 41.538% identity (53.846% similar) in 65 aa overlap (708-768:80-139) 680 690 700 710 720 730 FLJ004 ARAIHRLRKQLVWQVQEKWHLVEDLSRLLPEPGPSDSPGPKYPASQASRPQSFCPGCPCP :::: .:::. : . : .: :: : FLJ002 QKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPG----PPGF-PGKPGM 50 60 70 80 90 100 740 750 760 770 780 FLJ004 GSPG-HQAPRP-GPSVVDAAGLRSP--CPGQHGAPASARRFRFPSGAEL :.:: : : : :: . : .: ::. : : FLJ002 GKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPG 110 120 130 140 150 160 FLJ002 LPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQG 170 180 190 200 210 220 >>KIAA0482 ( 1332 res) hj01880 (1332 aa) initn: 119 init1: 87 opt: 141 Z-score: 102.9 bits: 30.6 E(): 1.6 Smith-Waterman score: 141; 35.366% identity (56.098% similar) in 82 aa overlap (698-775:27-105) 670 680 690 700 710 720 FLJ004 TVCVSQTQANARAIHRLRKQLVWQVQEKWHLVEDLSRLLPEPGPSDSPGPKYPASQASRP .: .: :. : : :: :. .. : KIAA04 SNFSTLRDLDLPPHSLSQASRPPRASVVASLPSLFCSPHGPDMSGPLEGADGGGDP 10 20 30 40 50 730 740 750 760 770 780 FLJ004 ---QSFCPG-CPCPGSPGHQAPRPGPSVVDAAGLRSPCPGQHGAPASARRFRFPSGAEL .::::: : :: : :. : ::::..: . : :. : ..... : KIAA04 RPGESFCPGGVPSPGPPQHR-PCPGPSLADDTDANSN--GSSGNESNGHESRGASQRSSH 60 70 80 90 100 110 KIAA04 SSSSGNGKDSALLETTESSKSTNSQSPSPPSSSIAYSLLSASSEQDNPSTSGCSSEQSAR 120 130 140 150 160 170 >>KIAA0775 ( 639 res) hk05255 (639 aa) initn: 137 init1: 102 opt: 132 Z-score: 99.8 bits: 29.0 E(): 2.3 Smith-Waterman score: 132; 34.247% identity (49.315% similar) in 73 aa overlap (707-777:372-442) 680 690 700 710 720 730 FLJ004 NARAIHRLRKQLVWQVQEKWHLVEDLSRLLPEPGPSDSPGPKYPASQASRPQSFCPGCPC : :.: .: : :. :: : :: KIAA07 ILRTLLQEQARSGGQRHSPLSQRHSPAPQCPSPSPPARAAPPCPPCQSPVPQRRSPVPPC 350 360 370 380 390 400 740 750 760 770 780 FLJ004 PGSPGHQAP-RPG-PSVVDAAGLRSPCPGQHGAPASARRFRFPSGAEL :. ...: :. :: : ::: : . .:. :: : KIAA07 PSPQQRRSPASPSCPSPVPQR--RSPVPPSCQSPSPQRRSPVPPSCPAPQPRPPPPPPPG 410 420 430 440 450 KIAA07 ERTLAERAYAKPPSHHVKAGFQGRRSYSELAEGAAYAGASPPWLQAEAATLPKPRAYGSE 460 470 480 490 500 510 >>KIAA1311 ( 889 res) fh11512 (889 aa) initn: 178 init1: 97 opt: 129 Z-score: 96.7 bits: 28.9 E(): 3.5 Smith-Waterman score: 129; 35.065% identity (48.052% similar) in 77 aa overlap (702-777:139-210) 680 690 700 710 720 730 FLJ004 SQTQANARAIHRLRKQLVWQVQEKWHLVEDLSRLLPEPGPSDSPG-PKYPASQASRPQSF : ..: : : :: : : : KIAA13 RDYDERGFCVLGDLCQFDHGNDPLVVDEVALPSMIPFPPPP--PGLPPPPPPGMLMPPMP 110 120 130 140 150 160 740 750 760 770 780 FLJ004 CPGCPCPGSPGHQAPRPGPSVVDAAGLRSPCPGQHGAPASARRFRFPSGAEL :: : :: :: .: :::. . ..: : : :: : . . .: KIAA13 GPG-PGPG-PG-PGPGPGPGPGPGHSMRLPVPQGHGQPPPSVVLPIPRPPITQSSLINSR 170 180 190 200 210 220 KIAA13 DQPGTSAVPNLASVGTRLPPPLPQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAA 230 240 250 260 270 280 >>KIAA1076 ( 804 res) hj06779 (804 aa) initn: 83 init1: 75 opt: 128 Z-score: 96.4 bits: 28.7 E(): 3.6 Smith-Waterman score: 128; 31.008% identity (44.186% similar) in 129 aa overlap (3-118:262-385) 10 20 FLJ004 GCRSPGPDAGAEGT----EGPAPSPACTEAIA :.:: : . : :: :.: . KIAA10 SGLSLSSPQVPGSPFSYPAPSPSLSSGGLPRTPGRDFSFTPTFSEPSGPLLLPVCPLPTG 240 250 260 270 280 290 30 40 50 60 70 80 FLJ004 KALRLIQPGTHIPP----TGSPAPQPLPVPAEMLLPWSVSSE-RAPG-VPE--PEELWEA . : . : : :: : : :::.: . :: . .. ::: .: : : KIAA10 R--RDERSGPLASPVLLETGLPLPLPLPLPLPLALPAVLRAQARAPTPLPPLLPAPLASC 300 310 320 330 340 90 100 110 120 130 FLJ004 EMERLRGSGTPVRGLPYAM-MDKRLIWQLREPAGVQTLRWQRWQRRRQTVERRLREAAQR : : : :. : . .: :. : :::. : KIAA10 PPPMKRKPGRPRRSPPSMLSLDGPLV---RPPAGAALGRELLLLPGQPQTPVFPSTHDPR 350 360 370 380 390 400 140 150 160 170 180 190 FLJ004 LARGLGLWEGALYEIGGLFGTGIRSYFTFLRFLLLLNLLSLLLTASFVLLPLVWLRPPDP KIAA10 TVTLDFRNAGIPAPPPPLPPQPPPPPPPPPVEPTKLPFKELDNQWPSEAIPPGPRGRDEV 410 420 430 440 450 460 >>KIAA1927 ( 1325 res) hj03131 (1325 aa) initn: 100 init1: 75 opt: 124 Z-score: 92.0 bits: 28.6 E(): 6.3 Smith-Waterman score: 124; 36.275% identity (49.020% similar) in 102 aa overlap (30-127:2-91) 10 20 30 40 50 FLJ004 GCRSPGPDAGAEGTEGPAPSPACTEAIAKALRLIQPGTHIPPTGSPAPQPLP-VPAEML- ::: . : .::. :: : : : .:: KIAA19 PALRPFPPLPSLPPSLSPPPPPPPPAPASAPR 10 20 30 60 70 80 90 100 110 FLJ004 --LPWSVSSERAPGVPEPEELWEAEMERLRGSGTPVRGLPYAMMDKRLIWQLREPAGVQT :: . . :: ::: : . : ::: : : : ::. : . . KIAA19 GPLPGRALTARA-GVP------AAALSRA-GSGWG-SGAPSAAMDRPLS---SSAEAEEE 40 50 60 70 80 120 130 140 150 160 170 FLJ004 LRWQRWQRRRQTVERRLREAAQRLARGLGLWEGALYEIGGLFGTGIRSYFTFLRFLLLLN :.:: .:::. KIAA19 LEWQVASRRRKAWAKCRSSWQASETEDLSTEATTQDEEEDEEEDLPGAQLPAAGGRGNVP 90 100 110 120 130 140 >>FLJ00247 ( 925 res) sj08552 (925 aa) initn: 103 init1: 62 opt: 121 Z-score: 91.4 bits: 28.0 E(): 6.9 Smith-Waterman score: 121; 28.926% identity (61.157% similar) in 121 aa overlap (132-245:324-441) 110 120 130 140 150 FLJ004 KRLIWQLREPAGVQTLRWQRWQRRRQTVERRLREAAQRLARGLGLWEGA--LYEIGGLFG :::. : .: ... . . :: . . FLJ002 NRIEEGERPDRAKGYDLELSMALGTYYPPPRLRQLLPMLLQGTSIFTAPKEIAEIKAQLE 300 310 320 330 340 350 160 170 180 190 200 210 FLJ004 TGI--RSYFTFLRFLLLLNLLSL---LLTASFVLLPLVWLRPPDPGPTLNLTLQCPGSRQ :.. :.: . ::.:: :. :.. . .. .:..: : : .: : :::. :: . FLJ002 TALKWRNYEVKLRLLLHLEELQMEHDIRHYDLESVPMTW-DPVDQNPRL-LTLEVPGVTE 360 370 380 390 400 410 220 230 240 250 260 270 FLJ004 SPPGVLRFHNQLWHVLTGRAFTNTYLFYGAYRVGPESSSVYSIRLAYLLSPLACLLLCFC : :.::: ..:. .:.... . . : .. FLJ002 SRPSVLR-GDHLFALLSSETHQEDPITYKGFVHKVELDRVKLSFSMSLLSRFVDGLTFKV 420 430 440 450 460 470 280 290 300 310 320 330 FLJ004 GTLRRMVKGLPQKTLLGQGYQAPLSAKVFSSWDFCIRVQEAATIKKHEISNEFKVELEEG FLJ002 NFTFNRQPLRVQHRALELTGRWLLWPMLFPVAPRDVPLLPSDVKLKLYDRSLESNPEQLQ 480 490 500 510 520 530 >>KIAA1631 ( 1032 res) fh15959s1 (1032 aa) initn: 133 init1: 62 opt: 121 Z-score: 91.0 bits: 28.0 E(): 7.2 Smith-Waterman score: 121; 28.926% identity (61.157% similar) in 121 aa overlap (132-245:328-445) 110 120 130 140 150 FLJ004 KRLIWQLREPAGVQTLRWQRWQRRRQTVERRLREAAQRLARGLGLWEGA--LYEIGGLFG :::. : .: ... . . :: . . KIAA16 NRIEEGERPDRAKGYDLELSMALGTYYPPPRLRQLLPMLLQGTSIFTAPKEIAEIKAQLE 300 310 320 330 340 350 160 170 180 190 200 210 FLJ004 TGI--RSYFTFLRFLLLLNLLSL---LLTASFVLLPLVWLRPPDPGPTLNLTLQCPGSRQ :.. :.: . ::.:: :. :.. . .. .:..: : : .: : :::. :: . KIAA16 TALKWRNYEVKLRLLLHLEELQMEHDIRHYDLESVPMTW-DPVDQNPRL-LTLEVPGVTE 360 370 380 390 400 410 220 230 240 250 260 270 FLJ004 SPPGVLRFHNQLWHVLTGRAFTNTYLFYGAYRVGPESSSVYSIRLAYLLSPLACLLLCFC : :.::: ..:. .:.... . . : .. KIAA16 SRPSVLR-GDHLFALLSSETHQEDPITYKGFVHKVELDRVKLSFSMSLLSRFVDGLTFKV 420 430 440 450 460 470 280 290 300 310 320 330 FLJ004 GTLRRMVKGLPQKTLLGQGYQAPLSAKVFSSWDFCIRVQEAATIKKHEISNEFKVELEEG KIAA16 NFTFNRQPLRVQHRALELTGRWLLWPMLFPVAPRDVPLLPSDVKLKLYDRSLESNPEQLQ 480 490 500 510 520 530 782 residues in 1 query sequences 2210212 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:02:48 2009 done: Fri Feb 27 11:02:48 2009 Total Scan time: 0.700 Total Display time: 0.170 Function used was FASTA [version 34.26.5 April 26, 2007]