# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj07412.fasta.huge -Q ../query/FLJ00238.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00238, 204 aa vs ./tmplib.10216 library 2210790 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 6.4946+/-0.00566; mu= 7.6179+/- 0.382 mean_var=183.6985+/-39.893, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.094628 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00034 ( 1343 res) as00034 (1343) 119 27.7 3.1 KIAA1587 ( 991 res) fj08327 ( 991) 116 27.1 3.4 KIAA0977 ( 1207 res) hj07018 (1207) 117 27.4 3.5 KIAA0137 ( 801 res) ha02915s1 ( 801) 111 26.3 4.7 FLJ00132 ( 572 res) sh02007 ( 572) 103 25.1 8.2 KIAA1292 ( 595 res) hk05468(revised) ( 595) 103 25.1 8.4 KIAA1047 ( 2348 res) hh01221s1 (2348) 110 26.8 10 KIAA0324 ( 2800 res) ee08846s1 (2800) 111 27.0 10 KIAA0808 ( 530 res) hk04477s1 ( 530) 99 24.5 11 KIAA1616 ( 1017 res) fj13825 (1017) 103 25.4 12 KIAA0608 ( 775 res) hh00889b ( 775) 101 25.0 12 KIAA0176 ( 265 res) ha03941 ( 265) 93 23.3 13 KIAA1048 ( 897 res) hh02560 ( 897) 100 24.9 14 KIAA1188 ( 339 res) hg02860a ( 339) 93 23.4 15 KIAA0352 ( 721 res) hg01642 ( 721) 96 24.2 18 KIAA2035 ( 1135 res) ff09201 (1135) 98 24.8 20 KIAA1426 ( 1066 res) fg04231s1 (1066) 97 24.6 21 KIAA1986 ( 334 res) pg00636 ( 334) 89 22.8 22 KIAA0407 ( 2143 res) hg01339 (2143) 101 25.5 22 KIAA1713 ( 1652 res) fh22344 (1652) 99 25.1 23 KIAA0859 ( 707 res) hk06485s1 ( 707) 93 23.8 24 KIAA0842 ( 1020 res) hk05077 (1020) 95 24.3 25 KIAA1768 ( 1207 res) ph00672(revised) (1207) 96 24.5 25 KIAA1983 ( 418 res) fk09737(revised) ( 418) 89 23.0 25 KIAA0909 ( 1234 res) hk10471 (1234) 96 24.5 25 KIAA1870 ( 832 res) hh05136b ( 832) 93 23.9 26 KIAA0920 ( 1134 res) hh02592 (1134) 94 24.2 29 KIAA0350 ( 1062 res) hg01945 (1062) 93 24.0 31 KIAA2010 ( 920 res) fj14762 ( 920) 92 23.8 31 FLJ00153 ( 497 res) sh06127 ( 497) 88 22.9 31 KIAA0363 ( 1522 res) hh00103 (1522) 95 24.5 32 FLJ00230 ( 414 res) sj06557 ( 414) 85 22.4 37 FLJ00324 ( 376 res) sj01157 ( 376) 84 22.2 38 KIAA1339 ( 409 res) fj00071 ( 409) 84 22.3 40 KIAA0929 ( 1663 res) hh03374 (1663) 93 24.3 40 FLJ00283 ( 500 res) sh02088 ( 500) 85 22.5 41 KIAA0950 ( 343 res) hj05289 ( 343) 82 21.9 43 KIAA0832 ( 469 res) hj04617 ( 469) 84 22.4 43 FLJ00416 ( 221 res) sj04686 ( 221) 79 21.3 44 KIAA1201 ( 761 res) fg03153 ( 761) 87 23.0 44 KIAA0096 ( 766 res) ha01240s1 ( 766) 86 22.9 49 KIAA1996 ( 437 res) bj00079 ( 437) 82 22.0 50 KIAA1075 ( 1505 res) hj06716s1 (1505) 90 23.8 50 KIAA1742 ( 1301 res) pj01304s1 (1301) 89 23.6 51 KIAA1863 ( 452 res) fj07583 ( 452) 82 22.1 51 KIAA1020 ( 638 res) fg00473s1 ( 638) 84 22.5 52 FLJ00261 ( 1651 res) sh06537 (1651) 90 23.9 53 KIAA1424 ( 1944 res) ha06448 (1944) 91 24.1 54 FLJ00201 ( 705 res) sj04110 ( 705) 84 22.6 56 KIAA0672 ( 824 res) hk02382 ( 824) 85 22.8 56 >>FLJ00034 ( 1343 res) as00034 (1343 aa) initn: 143 init1: 84 opt: 119 Z-score: 97.7 bits: 27.7 E(): 3.1 Smith-Waterman score: 119; 26.531% identity (55.102% similar) in 98 aa overlap (21-117:214-303) 10 20 30 40 FLJ002 SKHGGKKERCCRACFQKLSEGPGSPDSSGSGTSQGEPSPALS-PASPGPQ ::. : . .:..:. :::. : :. : : FLJ000 AWRTGKTVSPQSNSSRPTCARHLTLGTGDGGPAPPPAPSSASSSPSPSPSSSSPSPPPPP 190 200 210 220 230 240 50 60 70 80 90 100 FLJ002 ATGGQGANTDYRPPDDAVFDIITDEELCQIQESGSSLPETPTETDSLDPNAAEQDTTSTS . : :: ::: . . .:. : : . : ..:.... .... . FLJ000 PPPAPPA-----PPAPR-FDIY--DPFHPTDEAYSPPPAPEQKYDPFEPTGSNPSSSAGT 250 260 270 280 290 110 120 130 140 150 160 FLJ002 LTPEDTEDMPVGQDSEICLLKSGELMIKVPLTVDEIASFGEGSRELFVRSSTYSLIPITV .::. :. FLJ000 PSPEEEEEEEEEEEEEEEDEEEEEGLSQSISRISETLAGIYDDNSLSQDFPGDESPRPDA 300 310 320 330 340 350 >>KIAA1587 ( 991 res) fj08327 (991 aa) initn: 85 init1: 62 opt: 116 Z-score: 96.9 bits: 27.1 E(): 3.4 Smith-Waterman score: 118; 27.451% identity (50.980% similar) in 204 aa overlap (18-200:130-327) 10 20 30 40 FLJ002 SKHGGKKERCCRACFQKLSEGPGS---PDSSGSGTSQGEPSPALSPA .:::::. : : . ...: :. . . KIAA15 TSVLPTSAEGPSTFVPPTISEASSASGQPTISEGPGTSVLPTPSEGLSTSGPPTISKGLC 100 110 120 130 140 150 50 60 70 80 90 100 FLJ002 SPGPQATGGQGANTDYRPPDDAVFDIITDEELCQIQESGSSLPETPTE--TDSLDPNAAE . :.. .: ::. ::: .. . :. . ..::: :: : . :. :.: : KIAA15 TSVTLAAS-EGRNTS-RPPTSSE-EPSTSVPPTASEVPSTSLPPTPGEGTSTSVPPTAYE 160 170 180 190 200 210 110 120 130 140 FLJ002 QDTTSTSLTPED---TEDMPV---GQDSEICLLKSGELMIKVPLTVDE--------IASF .::. ::.. : .:. : . . : . : .: : :: :. KIAA15 GPSTSVVPTPDEGPSTSVLPTPGEGPGTSVPLAATEGLSTSVQATPDEGPSTSVPPTATE 220 230 240 250 260 270 150 160 170 180 190 200 FLJ002 GEGSRELFVRSSTYSL-IPITVAEAGLTISWVFSSDPKSISFRCGLPG-GRGHTAGSV : .. .:. : .: : .:. : .:: .:::. .: :.: . KIAA15 GLSTPVPPTRDEGPSTSVPATPGEGPSTSVLPAASDGQSISL---VPTRGKGSSTSVPPT 280 290 300 310 320 330 KIAA15 ATEGLSTSVQPTAGEGSSTSVPPTPGGGLSTSVPPTATEELSTSVPPTPGEGPSTSVLPI 340 350 360 370 380 390 >>KIAA0977 ( 1207 res) hj07018 (1207 aa) initn: 102 init1: 79 opt: 117 Z-score: 96.7 bits: 27.4 E(): 3.5 Smith-Waterman score: 117; 28.704% identity (54.630% similar) in 108 aa overlap (30-135:9-110) 10 20 30 40 50 FLJ002 SKHGGKKERCCRACFQKLSEGPGSPDSSGSGTSQGEPSPALSPASPGPQATG--GQGANT :: ..:.: :::: : .: : :: . KIAA09 RSASFAPASGRRASRPDP---PASPTPAVTRRLGAGARA 10 20 30 60 70 80 90 100 110 FLJ002 DYRPPDDAVFDIITDEELCQIQESGSSLPETPTETDSLDPNAAEQDTTSTSLTPEDTEDM : :. : . .. . :: :.:: : ..: ... ::.. :. :.: KIAA09 APRRAMDGRTPRPQDAPARRKPKAKAPLP--PAETKYTDVSSAADSVESTAFIMEQKENM 40 50 60 70 80 90 120 130 140 150 160 170 FLJ002 PVGQDSEICLLKSGELMIKVPLTVDEIASFGEGSRELFVRSSTYSLIPITVAEAGLTISW . .: :. .. :... KIAA09 -IDKDVELSVVLPGDIIKSTTVHGSKPMMDLLIFLCAQYHLNPSSYTIDLLSAEQNHIKF 100 110 120 130 140 150 >>KIAA0137 ( 801 res) ha02915s1 (801 aa) initn: 100 init1: 73 opt: 111 Z-score: 94.2 bits: 26.3 E(): 4.7 Smith-Waterman score: 111; 30.000% identity (52.500% similar) in 80 aa overlap (2-74:9-86) 10 20 30 40 FLJ002 SKHGGKKERC-CRACFQKLSEGPGSPDSS------GSGTSQGEPSPALSPASP .: : :: :: : .. : : :.:: .::. .: :: . .:: KIAA01 LARPQRGPRHDGGGCRCRCRRCRRR--GGVGFPESSLMSVQSSSGSLEGPPSWSQLSTSP 10 20 30 40 50 50 60 70 80 90 100 FLJ002 GPQATGGQGANTDYRPPDDAVFDIITDEELCQIQESGSSLPETPTETDSLDPNAAEQDTT : .... . .. ::. . :: KIAA01 TPGSAAAARSLLNHTPPSGRPREGAMDELHSLDPRRQELLEARFTGVASGSTGSTGSCSV 60 70 80 90 100 110 >>FLJ00132 ( 572 res) sh02007 (572 aa) initn: 39 init1: 39 opt: 103 Z-score: 90.0 bits: 25.1 E(): 8.2 Smith-Waterman score: 103; 33.333% identity (52.688% similar) in 93 aa overlap (38-126:253-341) 10 20 30 40 50 60 FLJ002 ERCCRACFQKLSEGPGSPDSSGSGTSQGEPSPALSPA--SP-GPQATGGQGANTDYRPPD ::.:. : :: ::: : : ::: FLJ001 NSFDVHGCDLDLFLDLGDLEEPQPVPKAPESPSLDSALASPLDPQAL----ACTPASPPD 230 240 250 260 270 70 80 90 100 110 120 FLJ002 DAVFDIITDEELCQIQESGSSL-PETPTETDSLDPNAAEQDTTSTSLTPEDTEDMPVGQD . : : ... .::: :.:: . . . :. :. .: :: :. .:. FLJ001 SQPPASPQDSEALDFETPSSSLAPQTPDSALASETLASPQSLPPASPLLEDREEGDLGKA 280 290 300 310 320 330 130 140 150 160 170 180 FLJ002 SEICLLKSGELMIKVPLTVDEIASFGEGSRELFVRSSTYSLIPITVAEAGLTISWVFSSD ::. FLJ001 SELAETPKEEKAEGAAMLELVGSILRGCVPGVYRVQTVPSARRPVVKFCHRPSGLHGDVS 340 350 360 370 380 390 >>KIAA1292 ( 595 res) hk05468(revised) (595 aa) initn: 129 init1: 63 opt: 103 Z-score: 89.8 bits: 25.1 E(): 8.4 Smith-Waterman score: 103; 39.655% identity (56.897% similar) in 58 aa overlap (16-67:480-537) 10 20 30 40 FLJ002 SKHGGKKERCCRACFQKLSEGPGSPDSSGSGTS---QGEPSPALS : :..:: :::: : :: ::: . KIAA12 RNPALQTSLSSLSSSVSRAPRTSSSSLQADQASSNAPGPRPSSGSHRSPARQGLPSPPGT 450 460 470 480 490 500 50 60 70 80 90 FLJ002 PASP---GPQATGGQGANTDYRPPDDAVFDIITDEELCQIQESGSSLPETPTETDSLDPN : :: ::.:.. .. ::. .: KIAA12 PHSPSYAGPKAVAFIHTDLPEPPPSLTVQRDHPQLKTPPSKLNGQSPGLARLGPATGPPG 510 520 530 540 550 560 >>KIAA1047 ( 2348 res) hh01221s1 (2348 aa) initn: 80 init1: 51 opt: 110 Z-score: 88.3 bits: 26.8 E(): 10 Smith-Waterman score: 110; 28.070% identity (53.509% similar) in 114 aa overlap (36-140:839-947) 10 20 30 40 50 FLJ002 KKERCCRACFQKLSEGPGSPDSSGSGTSQGEPSPALSPAS-------PGPQATGGQGANT .: :: . : : .:. .: :: KIAA10 TQVNDSISAETAEQMDVDQQEHSAEEGSVCDPPPATKADSVDVEVRVPENHASKVEGDNT 810 820 830 840 850 860 60 70 80 90 100 110 FLJ002 DYRPPDDAVFDI-ITDEELCQIQESGSSLPETPTETDSLDPNAAEQDTTSTSLTPEDTED : : : . ::.: :. ... :: ...:: .:..:. . :: . KIAA10 KERDLDRASEKVEPRDEDLVVAQQINAQRPEPQSDNDSSATCSADEDVDGE---PERQRM 870 880 890 900 910 920 120 130 140 150 160 170 FLJ002 MPVGQDSEICLLK-SGELMIKVPLTVDEIASFGEGSRELFVRSSTYSLIPITVAEAGLTI .:. ::. ::. .: .... :: KIAA10 FPM--DSKPSLLNPTGSILVSSPLKPNPLDLPQLQHRAAVIPPMVSCTPCNIPIGTPVSG 930 940 950 960 970 980 >>KIAA0324 ( 2800 res) ee08846s1 (2800 aa) initn: 88 init1: 88 opt: 111 Z-score: 88.2 bits: 27.0 E(): 10 Smith-Waterman score: 111; 29.670% identity (58.242% similar) in 91 aa overlap (19-109:2677-2762) 10 20 30 40 FLJ002 SKHGGKKERCCRACFQKLSEGPGSPDSSGSGTSQGEPSPALSPASPGP : . .: .::.:..:.. :: :::.::: KIAA03 TPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSP--SPAKPGP 2650 2660 2670 2680 2690 2700 50 60 70 80 90 100 FLJ002 QATGGQGANTDYRPPDDAVFDIITDEELCQIQESGSSLPETPTETDSLDPNAAEQDTTST :: . . .:: . . . ....: :: .:.: .:. . .: :. KIAA03 QALPKPA--SPKKPPPGERRSRSPRKPIDSLRDS-RSLSYSPVERRRPSPQPSPRDQQSS 2710 2720 2730 2740 2750 2760 110 120 130 140 150 160 FLJ002 SLTPEDTEDMPVGQDSEICLLKSGELMIKVPLTVDEIASFGEGSRELFVRSSTYSLIPIT : KIAA03 SSERGSRRGQRGDSRSPSHKRRRETPSPRPMRHRSSRSP 2770 2780 2790 2800 >>KIAA0808 ( 530 res) hk04477s1 (530 aa) initn: 85 init1: 60 opt: 99 Z-score: 87.4 bits: 24.5 E(): 11 Smith-Waterman score: 99; 21.739% identity (50.932% similar) in 161 aa overlap (35-194:201-352) 10 20 30 40 50 60 FLJ002 GKKERCCRACFQKLSEGPGSPDSSGSGTSQGEPSPALSPASPGPQ-ATGGQGANTDYRPP : : ::. :: . :: . .... KIAA08 IRQQPGMMPHGQLTTINQSQLSAQLGLNMGGSNVPHNSPSPPGSKSATPSPSSSVHEDEG 180 190 200 210 220 230 70 80 90 100 110 120 FLJ002 DDAVFDIITDEELCQIQESGSSLPETPTETDSLDPNAAEQDTTSTSLTPEDTEDMPVGQD ::. . :. : .. :.. :.:: . . ::: .. ... .: .::. ::. KIAA08 DDT--SKINGGEKRPASDMGKK-PKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQN 240 250 260 270 280 130 140 150 160 170 180 FLJ002 SEICLLKSGELMIKVPLTVDEIASFGEGSRELFVRSSTYSLIPITVAEAGLTISWVFSSD . . ::. : : ..:: ..... ... . :. : : .: KIAA08 PNATF---GEVSKIVASMWD---GLGEEQKQVYKKKTEAAKKEYLKQLAAYRASLVSKSY 290 300 310 320 330 340 190 200 FLJ002 PKSISFRCGLPGGRGHTAGSV . .. . . : KIAA08 SEPVDVKTSQPPQLINSKPSVFHGPSQAHSALYLSSHYHQQPGMNPHLTAMHPSLPRNIA 350 360 370 380 390 400 >>KIAA1616 ( 1017 res) fj13825 (1017 aa) initn: 92 init1: 53 opt: 103 Z-score: 87.2 bits: 25.4 E(): 12 Smith-Waterman score: 115; 26.257% identity (53.631% similar) in 179 aa overlap (26-198:728-883) 10 20 30 40 50 FLJ002 SKHGGKKERCCRACFQKLSEGPGSPDSSGSGTSQGEPSPALSPASPGPQATG-GQ :.: . . :::: . : .:.... . KIAA16 AIVPDSRRPSSCIDIYVSAMDELHCDIDPLDNSVNILGLGEPSFSTPVPSTAPSSSAYAT 700 710 720 730 740 750 60 70 80 90 100 110 FLJ002 GANTDYRPPDDAV-FDIITDEELCQIQESGSSLPETPTETDSLDP--NAAEQDTTSTSL- : :: :::. .. :. ::. . ... . . ::: . :: : .. :.. .: : KIAA16 LAPTD-RPPSRSIDFEDITSMDTRSFSSDYTHLPECQNPWDSEPPMYHTIERSKSSRYLA 760 770 780 790 800 810 120 130 140 150 160 FLJ002 -TPEDTEDMPVGQDSEICLLKSGELMIKVPLTVDEIASFGEGSRELFVRSSTYSLIPITV :: :. :. .:: .:.. : . . :.:: . :... :. : . KIAA16 TTPFLLEEAPI--------VKSHSFMFS-P-SRSYYANFG-----VPVKTAEYTSITDCI 820 830 840 850 860 170 180 190 200 FLJ002 AEAGLTISWVFSSDPKSISFRCGLPGGRGHTAGSV .. :..:. : ..::: : KIAA16 DTRCVNA-------PQAIADRAAFPGGLGDKVEDLTCCHPEREAELSHPSSDSEENEAKG 870 880 890 900 910 204 residues in 1 query sequences 2210790 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:45:55 2009 done: Fri Feb 27 10:45:55 2009 Total Scan time: 0.370 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]