# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj07406.fasta.huge -Q ../query/FLJ00237.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00237, 351 aa vs ./tmplib.10216 library 2210643 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 6.1950+/-0.00613; mu= 11.1031+/- 0.413 mean_var=233.1238+/-52.352, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.084000 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0821 ( 1566 res) hh02631 (1566) 651 91.9 2.9e-19 KIAA0579 ( 910 res) bg00015 ( 910) 136 29.1 1.3 KIAA1041 ( 642 res) fh02801 ( 642) 127 27.8 2.4 KIAA1986 ( 334 res) pg00636 ( 334) 120 26.5 3 FLJ00163 ( 521 res) sh06933 ( 521) 121 26.9 3.5 FLJ00317 ( 111 res) sh07047 ( 111) 109 24.4 4.3 FLJ00252 ( 819 res) sj09394 ( 819) 120 27.1 4.8 KIAA1856 ( 1134 res) fh03203 (1134) 122 27.6 4.8 FLJ00378 ( 855 res) sj00210 ( 855) 120 27.2 4.9 KIAA1486 ( 677 res) fj07162 ( 677) 118 26.8 5.2 KIAA1768 ( 1207 res) ph00672(revised) (1207) 120 27.4 5.9 KIAA1115 ( 895 res) hk05464 ( 895) 118 26.9 6 FLJ00386 ( 811 res) sj04204 ( 811) 113 26.3 8.6 KIAA1482 ( 818 res) fj06205 ( 818) 112 26.2 9.4 KIAA1522 ( 1044 res) fh14706(revised) (1044) 112 26.3 11 FLJ00104 ( 287 res) as00104 ( 287) 104 24.5 11 KIAA1644 ( 132 res) fg07060 ( 132) 99 23.3 11 KIAA2001 ( 689 res) bj00176 ( 689) 107 25.4 13 KIAA1205 ( 1217 res) fg03511a (1217) 108 25.9 16 KIAA1375 ( 546 res) fj04426 ( 546) 103 24.8 16 KIAA0924 ( 617 res) hh02883 ( 617) 103 24.9 17 KIAA1172 ( 929 res) hj03919(revised) ( 929) 105 25.4 18 KIAA1809 ( 800 res) fk01629 ( 800) 104 25.2 18 KIAA1912 ( 589 res) fj18220 ( 589) 102 24.7 18 KIAA1545 ( 968 res) fj14026s1 ( 968) 103 25.2 22 KIAA1811 ( 715 res) ha06731 ( 715) 101 24.7 22 KIAA1224 ( 997 res) fh02652 ( 997) 103 25.2 22 KIAA0613 ( 734 res) hg01088b ( 734) 101 24.7 22 KIAA0915 ( 846 res) hk06275s1 ( 846) 101 24.8 24 KIAA1402 ( 788 res) hk09846 ( 788) 100 24.7 25 KIAA1883 ( 1480 res) fh02249 (1480) 103 25.5 27 KIAA0522 ( 1555 res) hg01393 (1555) 103 25.5 28 KIAA0900 ( 503 res) hk09606s1 ( 503) 96 23.9 28 KIAA0318 ( 1106 res) hg00364 (1106) 100 24.9 30 KIAA0596 ( 1531 res) hg01605 (1531) 101 25.3 33 KIAA0381 ( 1114 res) ah04695 (1114) 99 24.8 33 KIAA1602 ( 1003 res) fj10252 (1003) 98 24.6 34 KIAA1431 ( 891 res) fj00022 ( 891) 97 24.4 35 KIAA1249 ( 949 res) hh04184 ( 949) 97 24.4 36 FLJ00406 ( 261 res) sj08464 ( 261) 89 22.6 36 KIAA0409 ( 464 res) hg01499 ( 464) 92 23.3 37 KIAA0304 ( 2415 res) af07172 (2415) 102 25.7 38 KIAA0764 ( 419 res) hk04750 ( 419) 90 23.0 42 KIAA0812 ( 1364 res) hg01044 (1364) 97 24.7 43 KIAA0954 ( 1183 res) hj05543s1 (1183) 96 24.5 43 KIAA0929 ( 1663 res) hh03374 (1663) 98 25.0 44 FLJ00072 ( 204 res) as00072 ( 204) 85 21.9 44 KIAA1471 ( 1421 res) fj02383s1 (1421) 97 24.7 44 KIAA0200 ( 1042 res) ha02508 (1042) 95 24.3 44 KIAA1951 ( 679 res) fj05532 ( 679) 92 23.6 46 >>KIAA0821 ( 1566 res) hh02631 (1566 aa) initn: 633 init1: 327 opt: 651 Z-score: 439.3 bits: 91.9 E(): 2.9e-19 Smith-Waterman score: 651; 37.884% identity (63.140% similar) in 293 aa overlap (65-349:204-488) 40 50 60 70 80 90 FLJ002 SRMRLSPGPPSEWTWLLAPHFNPCHHHHRHPHPQPPTTSLLPTEPPSGPEVSSQGREASC : : : : . : .. : : . : KIAA08 QCYLPDAFKIMSQRCNNRTQCVVVAGSDAFPDPCPGTYKYLEVQYDCVPYKVEQ-KVFVC 180 190 200 210 220 230 100 110 120 130 140 150 FLJ002 EGTLRAVDPPVRHHSYGRHEGAWMKDPAARDDRIYVTNY--YYGNSLVEFRNLENFKQGR :::. : :. : .. ::: ::: ::::: . : ..:.:. . :.. .: KIAA08 PGTLQKVLEPTSTHESEHQSGAWCKDPLQAGDRIYVMPWIPYRTDTLTEYASWEDYVAAR 240 250 260 270 280 290 160 170 180 190 200 210 FLJ002 WSNMYKLPYNWIGTGHVVYQGAFYYNRAFTKNIIKYDLRQRFVASWALLPDVVYEDTTPW .. :.:: ::: :::.:: .::. :.::.::::: :. .. ... . :.::.:. KIAA08 HTTTYRLPNRVDGTGFVVYDGAVFYNKERTRNIVKYDLRTRIKSGETVINTANYHDTSPY 300 310 320 330 340 350 220 230 240 250 260 270 FLJ002 KWRGHSDIDFAVDESGLWVIYPAVDDRDEAQPEVIVLSRLDPGDLSVHRETTWKTRLRRN .: :..:::.::::.:::::: . :.. .:.:.:.: : : ::.: . KIAA08 RWGGKTDIDLAVDENGLWVIYAT-----EGNNGRLVVSQLNPYTLRF--EGTWETGYDKR 360 370 380 390 400 280 290 300 310 320 FLJ002 SYGNCFLVCGILYA-----VDTYNQQEG-QVAYAFDTHTGTDARPQLPFLNEHAYTTQID : .: :.:::.::. :: .. : .: :::.:... . .: : : . . ...: KIAA08 SASNAFMVCGVLYVLRSVYVDDDSEAAGNRVDYAFNTNANREEPVSLTFPNPYQFISSVD 410 420 430 440 450 460 330 340 350 FLJ002 YNPKERVLYAWDNGHQLTYTLHFVV :::.. ::.:.: . :.:.: KIAA08 YNPRDNQLYVWNNYFVVRYSLEFGPPDPSAGPATSPPLSTTTTARPTPLTSTASPAATTP 470 480 490 500 510 520 >>KIAA0579 ( 910 res) bg00015 (910 aa) initn: 254 init1: 99 opt: 136 Z-score: 104.2 bits: 29.1 E(): 1.3 Smith-Waterman score: 136; 31.915% identity (48.936% similar) in 94 aa overlap (28-113:685-773) 10 20 30 40 FLJ002 PRRWQTTPSRALPGWSNCRPRWRAGPTPQSPTPQSRMRLSPGPPSEW--------TW :. :.:.: :: : : . . KIAA05 GPLQGGFCANSNTASPSSHPSTSFANMATLPSCPAPSSSPALSSVPESSFYSSSGGGGST 660 670 680 690 700 710 50 60 70 80 90 100 FLJ002 LLAPHFNPCHHHHRHPHPQPPTTSLLPTEPPSGPEVSSQGREASCEGTLRAVDPPVRHHS : :: ::::.: : :::. :. :: : : .. .: :. . : . . KIAA05 GNIPASNPNHHHHHH-HQQPPAPPQ-PAPPPPGCIVCTS---CGCSGSCGSSGLTVSYAN 720 730 740 750 760 110 120 130 140 150 160 FLJ002 YGRHEGAWMKDPAARDDRIYVTNYYYGNSLVEFRNLENFKQGRWSNMYKLPYNWIGTGHV : .: KIAA05 YFQHPFSGPSVFTFPFLPFSPMCSSGYVSAQQYGGGSTFPVVHAPYSSSGTPDPVLSGQS 770 780 790 800 810 820 >>KIAA1041 ( 642 res) fh02801 (642 aa) initn: 82 init1: 73 opt: 127 Z-score: 99.7 bits: 27.8 E(): 2.4 Smith-Waterman score: 127; 31.111% identity (51.111% similar) in 90 aa overlap (6-86:379-467) 10 20 30 FLJ002 PRRWQTTPSRALPGWSNCRPRWRAGPTPQSP---- :: : .. : .:. . :.:. : KIAA10 TYQHSPSSTVSTHPHSNQSSLSNSHGSGLNTTGSNSVAQVSLSHPQMHPQPSPHPPHRPH 350 360 370 380 390 400 40 50 60 70 80 FLJ002 -TPQSRMRLSPGP---PSEWTWLLAPHF-NPCHHHHRHPHPQPPTTSLLPTEPPSGPEVS :: .: :: : :.. . : .:: .: :.: . ::. .: :: .:: KIAA10 GLPQHPQR-SPHPAPHPQQHSQLQSPHPQHPSPHQHIQHHPNHQHQTLTHQAPPPPQQVS 410 420 430 440 450 460 90 100 110 120 130 140 FLJ002 SQGREASCEGTLRAVDPPVRHHSYGRHEGAWMKDPAARDDRIYVTNYYYGNSLVEFRNLE KIAA10 CNSGVSNDWYATLDMLKESCRIASSVNWSDVDLSQFQGLMESMRQADLKNWSLDQVQFAD 470 480 490 500 510 520 >>KIAA1986 ( 334 res) pg00636 (334 aa) initn: 135 init1: 68 opt: 120 Z-score: 97.7 bits: 26.5 E(): 3 Smith-Waterman score: 130; 33.628% identity (46.903% similar) in 113 aa overlap (3-104:177-280) 10 20 30 FLJ002 PRRWQTTPSRALPGWSNCRPRWRAGPTPQSPT : .. : :: : : :.::: :: KIAA19 RSPPGSPSTPTEQRISVSSPGRGHKVFVVTRVESPPERAEP------P---ASPTPPSPP 150 160 170 180 190 40 50 60 70 80 FLJ002 PQSRMRLSPG-PP-----SEWTWLLAPHFNPCHHHHRHPHP---QPPTTSLLPTEPPSGP : ::. :: .. : :. : . : : .: . :: ::: :: KIAA19 PPPSPPASPSLPPAGAIDTRDTGSSEPQPPPEPPRSGPPLPNGLKPEFALALPPEPPPGP 200 210 220 230 240 250 90 100 110 120 130 140 FLJ002 EVS--SQGREASCEGTLRAVDPPVRHHSYGRHEGAWMKDPAARDDRIYVTNYYYGNSLVE ::. : : : . .: .:. : KIAA19 EVKGGSCGLEHGERGPRAGVEGPWVLYVTPGKPLPVVGLSFPLFKMVLAGASKVGLSSHL 260 270 280 290 300 310 >>FLJ00163 ( 521 res) sh06933 (521 aa) initn: 71 init1: 71 opt: 121 Z-score: 96.6 bits: 26.9 E(): 3.5 Smith-Waterman score: 121; 31.068% identity (46.602% similar) in 103 aa overlap (1-102:391-481) 10 20 FLJ002 PRRWQTTPS-RALPGWSNCRPRWRAGPTPQ : ::: :. .. :::.. : :. :: :. FLJ001 PVIWQNPVIWPNPIVWPGPVVWPNPLAWQNPPGWQTPPGWQTPPGWQG-PPDWQ-GP-PD 370 380 390 400 410 30 40 50 60 70 80 FLJ002 SPTPQSRMRLSPGPPSEWTWLLAPHFNPCHHHHRHPHPQPPTTSLLPTEPPSGPEVSSQG : : . : : : : : : . : : :: . : : : : .. FLJ001 WPLPPD-WPLPPDWPLPTDWPLPPDWIPADW------PIPPDWQNLRPSPNLRP--SPNS 420 430 440 450 460 90 100 110 120 130 140 FLJ002 REASCEGTLRAVDPPVRHHSYGRHEGAWMKDPAARDDRIYVTNYYYGNSLVEFRNLENFK : .. :. . : FLJ001 RASQNPGAAQPRDVALLQERVRAVTPQSLFPSLALFFVILSSVIQPSFFVNIL 470 480 490 500 510 520 >>FLJ00317 ( 111 res) sh07047 (111 aa) initn: 113 init1: 90 opt: 109 Z-score: 95.0 bits: 24.4 E(): 4.3 Smith-Waterman score: 109; 32.530% identity (45.783% similar) in 83 aa overlap (4-85:30-106) 10 20 30 FLJ002 PRRWQTTPSRALPGWSNC-RPRWRAGPTPQSPTP : : .: : .. .: :: : : FLJ003 RARDSPLEPGTPSFPTPGPGLWDLQTVAVWGTFLPTTLTGLGHTPEPALNPGPKGQ---P 10 20 30 40 50 40 50 60 70 80 90 FLJ002 QSRMRLSPGPPSEWTWLLAPHFNPCHHHHRHPHPQPPTTSLLPTEPPSGPEVSSQGREAS .: ::: : : : .. . :: :. :: :: . ::. : : FLJ003 ES---LSPEVPLSSRLLSMPAWDSPANSHRAPETQPLPPSLAEAGPPTDPLVVRNAG 60 70 80 90 100 110 100 110 120 130 140 150 FLJ002 CEGTLRAVDPPVRHHSYGRHEGAWMKDPAARDDRIYVTNYYYGNSLVEFRNLENFKQGRW >>FLJ00252 ( 819 res) sj09394 (819 aa) initn: 57 init1: 57 opt: 120 Z-score: 94.1 bits: 27.1 E(): 4.8 Smith-Waterman score: 120; 30.435% identity (48.913% similar) in 92 aa overlap (8-89:188-275) 10 20 30 FLJ002 PRRWQTTPSRALPGWSNCRPRWRAGPTPQSPTPQSRM :. : :. : ..:.: :: : . FLJ002 PGPQGAAPEPLGASVQRDSAQGRPCPPPQAPANQPEGASSAAP---GSPVPAPPTKASAL 160 170 180 190 200 210 40 50 60 70 80 FLJ002 RLSPGP-----PSEWTWLLAPH-FNPCHHHH--RHPHPQPPTTSLL--PTEPPSGPEVSS . :: :. . : : ..: :: ::: :.:: .. : . : :: .. FLJ002 PVEQGPAEPIPPGVASGGLRPDALGPTTAHHGPRHP-PKPPRSKATERPGQEPEGPGATP 220 230 240 250 260 270 90 100 110 120 130 140 FLJ002 QGREASCEGTLRAVDPPVRHHSYGRHEGAWMKDPAARDDRIYVTNYYYGNSLVEFRNLEN : FLJ002 AGERDDQSPDSVPERPRPADRRLCLPCVDASPLPGRTACPSLQEATRLIQEEFAFDGYLD 280 290 300 310 320 330 >>KIAA1856 ( 1134 res) fh03203 (1134 aa) initn: 64 init1: 64 opt: 122 Z-score: 94.1 bits: 27.6 E(): 4.8 Smith-Waterman score: 131; 31.532% identity (40.541% similar) in 111 aa overlap (1-104:925-1024) 10 20 FLJ002 PRRWQTTPSRALPGWSNCRPRW-------R ::. . ..: :: . :: : KIAA18 TAPATKTSRCAKGGPLSPRKDAGRAKDRKDPRK-KKKGKEAGPGAGLPPPRAPALPSEAR 900 910 920 930 940 950 30 40 50 60 70 80 FLJ002 AGPTPQSPTPQSRMRLSPGPPSEWTWLLAPHFNPCHHHHRHPHPQPPTTSLLPTEPPSGP : : : : :. . : :: : : . : . :: : :: ::: :: KIAA18 APPPPPPPPPHPPLPPPPLPPPPLPLRLPP-LPPPPLPRPHPPPPPPLPPLLP--PP--- 960 970 980 990 1000 90 100 110 120 130 140 FLJ002 EVSSQGREASCEGTLRAVDPPVRHHSYGRHEGAWMKDPAARDDRIYVTNYYYGNSLVEFR : : :.: :: KIAA18 ----QTRTLPAARTMRQPPPPRLALPRRRRSPPRPPSRPARRGPRPTPQARRRPRPSPRR 1010 1020 1030 1040 1050 1060 >>FLJ00378 ( 855 res) sj00210 (855 aa) initn: 57 init1: 57 opt: 120 Z-score: 93.9 bits: 27.2 E(): 4.9 Smith-Waterman score: 120; 30.435% identity (48.913% similar) in 92 aa overlap (8-89:425-512) 10 20 30 FLJ002 PRRWQTTPSRALPGWSNCRPRWRAGPTPQSPTPQSRM :. : :. : ..:.: :: : . FLJ003 PGPQGAAPEPLGASVQRDSAQGRPCPPPQAPANQPEGASSAAP---GSPVPAPPTKASAL 400 410 420 430 440 450 40 50 60 70 80 FLJ002 RLSPGP-----PSEWTWLLAPH-FNPCHHHH--RHPHPQPPTTSLL--PTEPPSGPEVSS . :: :. . : : ..: :: ::: :.:: .. : . : :: .. FLJ003 PVEQGPAEPIPPGVASGGLRPDALGPTTAHHGPRHP-PKPPRSKATERPGQEPEGPGATP 460 470 480 490 500 510 90 100 110 120 130 140 FLJ002 QGREASCEGTLRAVDPPVRHHSYGRHEGAWMKDPAARDDRIYVTNYYYGNSLVEFRNLEN : FLJ003 AGERDDQSPDSVPERPRPADRRLCLPCVDASPLPGRTACPSLQEATRLIQEEFAFDGYLD 520 530 540 550 560 570 >>KIAA1486 ( 677 res) fj07162 (677 aa) initn: 71 init1: 48 opt: 118 Z-score: 93.6 bits: 26.8 E(): 5.2 Smith-Waterman score: 118; 31.707% identity (44.715% similar) in 123 aa overlap (6-122:406-515) 10 20 30 FLJ002 PRRWQTTPSRALPGWSNCRPRWRAGPTPQSPTPQS : ::. .:: .. . . :. : : :: KIAA14 ESPLTPLEVTKLPVLENVSYMKQPAGASPSTLPSH-VPGHAKLEKEQAAALGPASATPA- 380 390 400 410 420 430 40 50 60 70 80 90 FLJ002 RMRLSPGPPSEWTWLLAPHFNPCHHHHRHPHPQPPTTSLLPT---EPPSGPEVSSQGREA . :: ::: .:: : . : : : :: : .:: : : KIAA14 -LSSSPPPPSTLYRTQSPHGYP-KSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHS----- 440 450 460 470 480 100 110 120 130 140 FLJ002 SCEGTLRAVDPPVRHHSYGR---HEGAWMKDPAARDDRIYVTNYYYGNSLVEFRNLENFK :.: .: : :: : ..:: : . : KIAA14 ---GSLSRSSPSV-PHSTPRPVSQDGAKMVNAAVNTYGAAPGGSRSRTPTSPLEELTSLF 490 500 510 520 530 540 150 160 170 180 190 200 FLJ002 QGRWSNMYKLPYNWIGTGHVVYQGAFYYNRAFTKNIIKYDLRQRFVASWALLPDVVYEDT KIAA14 SSGRSLLRKSSSGRRSKEPAEKSTEELKVRSHSTEPLPKLDNKERGHHGASSSREPVKAQ 550 560 570 580 590 600 351 residues in 1 query sequences 2210643 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:45:54 2009 done: Fri Feb 27 10:45:54 2009 Total Scan time: 0.460 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]