# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj06546.fasta.huge -Q ../query/FLJ00229.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00229, 627 aa vs ./tmplib.10216 library 2210367 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.4942+/-0.00422; mu= 19.6914+/- 0.286 mean_var=102.5481+/-22.704, 0's: 0 Z-trim: 0 B-trim: 25 in 1/39 Lambda= 0.126651 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1458 ( 612 res) fh16694 ( 612) 105 29.7 1.1 KIAA1883 ( 1480 res) fh02249 (1480) 105 30.2 1.8 KIAA0241 ( 522 res) ha04847 ( 522) 97 28.1 2.7 FLJ00045 ( 272 res) as00045 ( 272) 94 27.2 2.7 KIAA1342 ( 426 res) fj00418 ( 426) 96 27.8 2.7 KIAA1425 ( 495 res) hj01333(revised) ( 495) 93 27.4 4.4 KIAA0200 ( 1042 res) ha02508 (1042) 96 28.4 4.6 KIAA1407 ( 744 res) fh00894(revised) ( 744) 94 27.8 4.9 FLJ00106 ( 379 res) as00106 ( 379) 90 26.7 5.5 KIAA0448 ( 362 res) hg00135 ( 362) 89 26.5 6.1 KIAA0266 ( 766 res) ha02755 ( 766) 92 27.5 6.4 FLJ00077 ( 278 res) as00077 ( 278) 87 25.9 6.7 KIAA0288 ( 1097 res) ha06116(revised) (1097) 93 27.9 6.9 KIAA0793 ( 1055 res) hk05692 (1055) 92 27.7 7.6 KIAA0173 ( 1203 res) ha02346 (1203) 92 27.7 8.2 KIAA0987 ( 1115 res) hk01713 (1115) 91 27.5 9 KIAA0567 ( 978 res) hh02110 ( 978) 90 27.3 9.4 KIAA1766 ( 1123 res) fj16085(revised) (1123) 87 26.8 15 KIAA0483 ( 299 res) hj00879 ( 299) 81 24.9 15 KIAA0728 ( 1637 res) fh22477 (1637) 88 27.2 16 KIAA0733 ( 698 res) hk03729s1 ( 698) 84 25.9 17 KIAA1922 ( 370 res) fh11169 ( 370) 81 25.0 17 KIAA0892 ( 621 res) hk08289 ( 621) 83 25.7 18 KIAA0019 ( 838 res) ha00537 ( 838) 84 26.1 18 KIAA0613 ( 734 res) hg01088b ( 734) 83 25.8 19 KIAA0025 ( 422 res) ha00594 ( 422) 80 24.9 21 KIAA0350 ( 1062 res) hg01945 (1062) 84 26.2 21 KIAA0584 ( 738 res) hj00933 ( 738) 82 25.6 22 KIAA1614 ( 1208 res) fj12973 (1208) 84 26.3 23 KIAA0542 ( 1212 res) hg04325s1 (1212) 84 26.3 23 KIAA1623 ( 1236 res) fj04650 (1236) 84 26.3 23 FLJ00378 ( 855 res) sj00210 ( 855) 82 25.7 24 KIAA0464 ( 586 res) hg01093(revised) ( 586) 80 25.1 25 KIAA1748 ( 758 res) pj02084 ( 758) 81 25.4 25 KIAA1511 ( 1253 res) fg04486(revised) (1253) 83 26.1 26 KIAA0764 ( 419 res) hk04750 ( 419) 78 24.5 26 FLJ00256 ( 856 res) sj09675 ( 856) 81 25.5 27 KIAA1847 ( 564 res) bm00425 ( 564) 79 24.9 28 KIAA1092 ( 1154 res) hk04417 (1154) 82 25.9 28 KIAA1749 ( 1047 res) pj02119y1 (1047) 81 25.6 30 KIAA1744 ( 855 res) pj01516 ( 855) 80 25.3 31 FLJ00126 ( 878 res) sh01242 ( 878) 80 25.4 31 FLJ00184 ( 580 res) sj01836 ( 580) 78 24.7 32 KIAA0607 ( 731 res) hh00181a ( 731) 79 25.1 32 KIAA0922 ( 790 res) hh02839a ( 790) 79 25.1 33 KIAA0122 ( 1010 res) ha03733 (1010) 80 25.4 34 KIAA0358 ( 1584 res) hh00017 (1584) 82 26.1 34 KIAA1200 ( 1403 res) fg02656 (1403) 81 25.8 36 KIAA1264 ( 753 res) hj01058 ( 753) 78 24.9 37 FLJ00311 ( 249 res) sh06450 ( 249) 73 23.3 37 >>KIAA1458 ( 612 res) fh16694 (612 aa) initn: 103 init1: 66 opt: 105 Z-score: 105.8 bits: 29.7 E(): 1.1 Smith-Waterman score: 105; 34.483% identity (54.023% similar) in 87 aa overlap (2-82:82-163) 10 20 30 FLJ002 ARSAARSAVEAARTVRGRPMALRGPAGLGPG :..: .: . :: :..: . .: ::: KIAA14 VKKLEKQNEQLRSRSGAVQGAGSLGPGSPVRAGASIPSSGAASPRGFPLGLSAKSGGGPG 60 70 80 90 100 110 40 50 60 70 80 FLJ002 S--RRPLDEAVAGAEGREAPALVAAGGAPEDDEEDDGRGRGLLR---WDSFS-AWLHCVC : :: .: : :.: .:.::: . :: . : : : :. .::. KIAA14 SGPRRTSSE-----ELRDATSLLAAGEGGLLDEVEPLRPDELERLSGWEEEEESWLYSSP 120 130 140 150 160 90 100 110 120 130 140 FLJ002 VVGFDLELGQAVEVIYPQHSKLTDREKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRV KIAA14 KKKLTPMQKSVSPLVWCRQVLDYPSPDVECAKKSLIHKLDQTMSALKRQNLYNNPFNSMS 170 180 190 200 210 220 >>KIAA1883 ( 1480 res) fh02249 (1480 aa) initn: 145 init1: 69 opt: 105 Z-score: 101.8 bits: 30.2 E(): 1.8 Smith-Waterman score: 105; 55.263% identity (63.158% similar) in 38 aa overlap (29-65:1265-1302) 10 20 30 40 50 FLJ002 ARSAARSAVEAARTVRGRPMALRGPAGLGPGSRRPLDE-AVAGAEGREAPALVAAGGA ::: ::: : : ::: : :: . : : : KIAA18 GPPQGNSEQIKARLSRLSLALPPLTLTPFPGPGPRRPPWEGADAGAAGGEAGGAGAPGPA 1240 1250 1260 1270 1280 1290 60 70 80 90 100 110 FLJ002 PEDDEEDDGRGRGLLRWDSFSAWLHCVCVVGFDLELGQAVEVIYPQHSKLTDREKTNICY :: :..: KIAA18 EEDGEDEDEDEEEDEEAAAPGAAAGPRGPGRARAAPVPVVVSSADADAARPLRGLLKSPR 1300 1310 1320 1330 1340 1350 >>KIAA0241 ( 522 res) ha04847 (522 aa) initn: 111 init1: 87 opt: 97 Z-score: 98.6 bits: 28.1 E(): 2.7 Smith-Waterman score: 97; 32.787% identity (60.656% similar) in 61 aa overlap (167-220:17-77) 140 150 160 170 180 FLJ002 FRQSSGRRVSLHCLLDQFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLK-------RGYFQ : .: .::.. :.:: : : KIAA02 QEDTVFFHLPPRNGNGATVFGISCYRQIEAKALKVRQADITRETVQ 10 20 30 40 190 200 210 220 230 240 FLJ002 KSLVLISKLPYIHFFHTVLKQIAPEYFEKNEPYLEAACNDVDRWPAPVPGKTLHLPIMAV ::. ..:::: .... :. :. :::... KIAA02 KSVCVLSKLPLYGLLQAKLQLITHAYFEEKDFSQISILKELYEHMNSSLGGASLEGSQVY 50 60 70 80 90 100 250 260 270 280 290 300 FLJ002 VMKVRIPTCHDKPGTTQIVQLTQQVDTNISVILPTVHEVDIFRCFCPVFLHSQMLWELVL KIAA02 LGLSPRDLVLHFRHKVLILFKLILLEKKVLFYISPVNKLVGALMTVLSLFPGMIEHGLSD 110 120 130 140 150 160 >>FLJ00045 ( 272 res) as00045 (272 aa) initn: 52 init1: 52 opt: 94 Z-score: 98.5 bits: 27.2 E(): 2.7 Smith-Waterman score: 94; 29.752% identity (57.025% similar) in 121 aa overlap (494-607:36-147) 470 480 490 500 510 FLJ002 QSFIIPLERYVASLMPLQKSISPWKSPPQLRQFLPE---EFMKTLEKTGPQ--LTSRIKG :: . : .. : :::. . :...... FLJ000 SDMSSGLRAADFPRWKRHISEQLRRRDRLQRQAFEEIILQYNKLLEKSDLHSVLAQKLQA 10 20 30 40 50 60 520 530 540 550 560 570 FLJ002 DWIGL-YRHFLKSPNFDG-WFKTRRKEMTQKLEALHLEALCEEDLLLWIQKHTEVETVDL . . :: . ::. :: : .. .::.: :. : : : : ..:. . : ..: FLJ000 EKHDVPNRHEI-SPGHDGTWNDNQLQEMAQ-LRIKHQEELTE------LHKK-RGELAQL 70 80 90 100 110 580 590 600 610 620 FLJ002 VLKLKNKLLQADREHLPVKPDTMEKLRTHIDAIILALPEDLQGILLKTGMT :. :.:.. . ::: . : :.: : FLJ000 VIDLNNQMQRKDREMQMNEAKIAECLQTISDLETECLDLRTKLCDLERANQTLKDEYDAL 120 130 140 150 160 170 FLJ000 QITFTALEGKLRKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAK 180 190 200 210 220 230 >>KIAA1342 ( 426 res) fj00418 (426 aa) initn: 80 init1: 55 opt: 96 Z-score: 98.5 bits: 27.8 E(): 2.7 Smith-Waterman score: 96; 32.394% identity (57.746% similar) in 71 aa overlap (196-264:47-115) 170 180 190 200 210 220 FLJ002 PAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLK--QIAPEYFEKNEPYL .: : .: : ::: .: :: ..... . KIAA13 TVVGIFSAFGLVFTVSLFAWICCQRKSSKSNKTPPYKFVH-VLKGVDIYPENLNSKKKFG 20 30 40 50 60 70 230 240 250 260 270 280 FLJ002 EAACNDVDRWPAPVPGKTLHLPIMAVVMKVRIPTCHDKPGTTQIVQLTQQVDTNISVILP :.: :: :: ..::: . .. .: . :::. KIAA13 ADDKNEVKNKPA-VPKNSLHLDLEKRDLNGNFPKTNLKPGSPSDLENATPKLFLEGEKES 80 90 100 110 120 130 290 300 310 320 330 340 FLJ002 TVHEVDIFRCFCPVFLHSQMLWELVLLGEPLVVMAPSPSESSETVLALVNCISPLKYFSD KIAA13 VSPESLKSSTSLTSEEKQEKLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPY 140 150 160 170 180 190 >>KIAA1425 ( 495 res) hj01333(revised) (495 aa) initn: 104 init1: 78 opt: 93 Z-score: 94.9 bits: 27.4 E(): 4.4 Smith-Waterman score: 93; 32.584% identity (53.933% similar) in 89 aa overlap (528-615:241-323) 500 510 520 530 540 550 FLJ002 PEEFMKTLEKTGPQLTSRIKGDWIGLYRHFLKSPNFDGWFKTRRKEMTQKLEALHLEALC :: : ::. . ::::. ..: : . KIAA14 FKKRSVEDLKERYYHICAKLANVRAVPGTDLKIPVFDAGHERRRKEQLERLYNRTPEQVA 220 230 240 250 260 270 560 570 580 590 600 610 FLJ002 EEDLLLWIQKHTEVETVDLVLKLKNKLLQADREHLPVKPDTM-EKLRTHIDAIILALPED ::. :: :.. .. : ..: : : ..: . :: :. ::. : ::. KIAA14 EEEYLLQ-----ELRKIEARKKEREKRSQ-DLQKLITAADTTAEQRRTERKAPKKKLPQK 280 290 300 310 320 620 FLJ002 LQGILLKTGMT KIAA14 KEAEKPAVPETAGIKFPDFKSAGVTLRSQRMKLPSSVGQKKIKALEQMLLELGVELSPTP 330 340 350 360 370 380 >>KIAA0200 ( 1042 res) ha02508 (1042 aa) initn: 45 init1: 45 opt: 96 Z-score: 94.5 bits: 28.4 E(): 4.6 Smith-Waterman score: 96; 20.679% identity (50.926% similar) in 324 aa overlap (208-514:425-733) 180 190 200 210 220 230 FLJ002 VRDKTLKRGYFQKSLVLISKLPYIHFFHTVLKQIAPEYFEKNEPYLEAACNDVDRWPAPV :.::: . .: : .:. : . :::. KIAA02 QAQNAQRALAGVVLPSQGPGGASELSSAHQLQQIAAK--QKREQMLQ---NPQQATPAPA 400 410 420 430 440 240 250 260 270 280 290 FLJ002 PGK-TLHLPIMAVVMKVRIPTCHDKPGTTQIVQLTQQVDTNISVILPTVHEVDIFRCFCP ::. . .. .: .::.. . . :. .. ...:.:.. . : : KIAA02 PGQMSTWQQTGPSHSSLDVPYPMEKPASPS--SYKQDFTNSKLLMMPSVNKSSP-RPGGP 450 460 470 480 490 500 300 310 320 330 340 350 FLJ002 VFLHSQMLWELVLLGEPLVVMAPSPSESSETVLALVNCISPLKYFSDFRPYFTIHDSEFK . :.. .: .: . . .... .:: : .::.... . ... : KIAA02 YLQPSHV---NLLSHQPPSNLNQNSANNQGSVLDYGNT-KPLSHYKADCGQGSPGSGQSK 510 520 530 540 550 560 360 370 380 390 400 410 FLJ002 EYTTRTQAPPSV--ILGVTNPFFAKTLQHWPHIIRIGDLKPTGE--IPKQVKVK-KLKNL . . : .. : : .: .. : . . .: : :. :..: :. . .. KIAA02 P-ALMAYLPQQLSHISHEQNSLF--LMKPKPGNMPFRSLVPPGQEQNPSSVPVQAQATSV 570 580 590 600 610 420 430 440 450 460 FLJ002 KTLDSKPGVYTSYK--PYLNRDEE--IIKQLQKGV-QQKRPSEAQSVILRRYFLELTQSF : .: .:.. :::. ... ..:: : . :::. . :. . .. ::. : . KIAA02 GTQPPAVSVASSHNSSPYLSSQQQAAVMKQHQLLLDQQKQREQQQKHLQQQQFLQRQQHL 620 630 640 650 660 670 470 480 490 500 510 520 FLJ002 IIPLE-----RYVASLMPLQKSISPWKSPPQLRQFL-PEEFMKTLEKTGPQLTSRIKGDW . : :... : .. . . : :. :: . .. ::. .: KIAA02 LAEQEKQQFQRHLTRPPPQYQDPTQGSFPQQVGQFTGSSAAVPGMNTLGPSNSSCPRVFP 680 690 700 710 720 730 530 540 550 560 570 580 FLJ002 IGLYRHFLKSPNFDGWFKTRRKEMTQKLEALHLEALCEEDLLLWIQKHTEVETVDLVLKL KIAA02 QAGNLMPMGPGHASVSSLPTNSGQQDRGVAQFPGSQNMPQSSLYGMASGITQIVAQPPPQ 740 750 760 770 780 790 >>KIAA1407 ( 744 res) fh00894(revised) (744 aa) initn: 121 init1: 67 opt: 94 Z-score: 94.0 bits: 27.8 E(): 4.9 Smith-Waterman score: 95; 19.457% identity (48.869% similar) in 221 aa overlap (398-605:516-725) 370 380 390 400 410 420 FLJ002 VILGVTNPFFAKTLQHWPHIIRIGDLKPTGEIPKQVKVKKLKNLKTLDSKPGVYTSYKPY .. .. . :.::..: :... . . KIAA14 KKKKQEEEKLAQLKAQEEERQKREAEEKEAQLERKREEKRLKKMKELEKQKRIKRN---- 490 500 510 520 530 540 430 440 450 460 470 480 FLJ002 LNRDEEIIKQ-LQKGVQQKRPSEAQSVILRRYFLELTQSFIIPLERYVASLMPLQKSISP .. : : :. .. . .:. : .: .. :.. . :.: ::. .: . KIAA14 -QQLEAIAKEHYERVLLRKKGLEPW----KRLRMQSKQNIQVAEEHY--SLFLQRKYMLT 550 560 570 580 590 490 500 510 520 530 FLJ002 W---------KSPPQLRQFLPEEFMKTLEKTGPQLTSRIKGDWIGLYRHFLKSPNFDGWF : .. : :: . ..: . .. : . .. . . :::.. : .:: KIAA14 WFQRSQESLARKMAQADQFYSQILLKRVIQSWLQYVIDLQEEVRKFCVHFLQKKIFRAWF 600 610 620 630 640 650 540 550 560 570 580 590 FLJ002 KTRRKEMTQKLEALHLEALCEEDLLLWIQKHTEVETVDLVLKLKNKL---LQADREHLPV . :. .. .. : . .::: .: . : .. . . : : :. . . KIAA14 NMVREVKIDSQGKHEIAAEHSDRRILWITLRTWKKFVKFMKEERVKEERRQQLRRKVVEI 660 670 680 690 700 710 600 610 620 FLJ002 KPDTMEKLRTHIDAIILALPEDLQGILLKTGMT :: . : : KIAA14 LPDFQVPGRYHELYQQSDTWSLSKTSLVNE 720 730 740 >>FLJ00106 ( 379 res) as00106 (379 aa) initn: 64 init1: 64 opt: 90 Z-score: 93.1 bits: 26.7 E(): 5.5 Smith-Waterman score: 91; 26.957% identity (53.913% similar) in 115 aa overlap (413-526:219-320) 390 400 410 420 430 440 FLJ002 HWPHIIRIGDLKPTGEIPKQVKVKKLKNLKTLDSKPGVYTSYKPYLNRDEEIIKQLQKGV ..::. : :..: :..:.::.. FLJ001 PGSRQAGLGRAGDSAVLVLPPSPGPRSSRPSMDSEGGSL-----LLDEDSEVFKMLQEN- 190 200 210 220 230 240 450 460 470 480 490 500 FLJ002 QQKRPSEAQSVILRRYFLELTQSFIIPLERY-VASLMPLQKSISPWKSPPQLRQFLPEEF .. : . :: .: : : . :: . ...: .:.:: .: : : . FLJ001 REGRAAPRQSSSFR-----LLQEALEAEERGGTPAFLP--SSLSPQSSLPASRALATPPK 250 260 270 280 290 510 520 530 540 550 560 FLJ002 MKTLEKTGPQLTSRIKGDWIGLYRHFLKSPNFDGWFKTRRKEMTQKLEALHLEALCEEDL ..: :: . ..... : ::: FLJ001 LHTCEKCSTSIANQAVRIQEGRYRHPGCYTCADCGLNLKMRGHFWEDACAMEGMRLSLEA 300 310 320 330 340 350 >>KIAA0448 ( 362 res) hg00135 (362 aa) initn: 42 init1: 42 opt: 89 Z-score: 92.3 bits: 26.5 E(): 6.1 Smith-Waterman score: 89; 20.492% identity (52.459% similar) in 122 aa overlap (352-472:75-195) 330 340 350 360 370 380 FLJ002 SESSETVLALVNCISPLKYFSDFRPYFTIHDSEFKEYTTRTQAPPSVILGVTNPFFAKTL : : ...: .. . :: . KIAA04 SKLERAIARHEVREIEQRHTMDGPRQDATLDEEEDMVIIYNRVPKTASTSFTNIAYDLCA 50 60 70 80 90 100 390 400 410 420 430 440 FLJ002 QHWPHIIRIGDLKPTGEIPKQVKVKKLKNLKTL-DSKPGVYTSYKPYLNRDEEIIKQLQK .. :...:. : . . : .:. .::. . . ::: : .. ::. . .:. KIAA04 KNKYHVLHINTTKNNPVMSLQDQVRFVKNITSWKEMKPGFYHGHVSYLDFAKFGVKKKPI 110 120 130 140 150 160 450 460 470 480 490 500 FLJ002 GVQQKRPSEAQSVILRRYFLELTQSFIIPLERYVASLMPLQKSISPWKSPPQLRQFLPEE .. : . . .. :::.. ... :.: KIAA04 YINVIR-DPIERLVSYYYFLRFGDDYRPGLRRRKQGDKKTFDECVAEGGSDCAPEKLWLQ 170 180 190 200 210 220 510 520 530 540 550 560 FLJ002 FMKTLEKTGPQLTSRIKGDWIGLYRHFLKSPNFDGWFKTRRKEMTQKLEALHLEALCEED KIAA04 IPFFCGHSSECWNVGSRWAMDQAKYNLINEYFLVGVTEELEDFIMLLEAALPRFFRGATE 230 240 250 260 270 280 627 residues in 1 query sequences 2210367 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:45:45 2009 done: Fri Feb 27 10:45:46 2009 Total Scan time: 0.650 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]