# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj06355.fasta.huge -Q ../query/FLJ00227.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00227, 196 aa vs ./tmplib.10216 library 2210798 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 6.2566+/-0.00668; mu= 11.8521+/- 0.449 mean_var=275.2076+/-60.322, 0's: 0 Z-trim: 1 B-trim: 7 in 1/39 Lambda= 0.077311 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1668 ( 791 res) fh11717 ( 791) 149 28.7 0.86 KIAA1506 ( 3309 res) ff04330 (3309) 151 30.0 1.5 KIAA1297 ( 2242 res) fg03883 (2242) 141 28.6 2.7 KIAA1357 ( 836 res) fj01906 ( 836) 126 26.2 5.3 KIAA1539 ( 543 res) fg02356 ( 543) 123 25.5 5.4 FLJ00141 ( 1326 res) sh04092 (1326) 126 26.5 6.6 KIAA0638 ( 1384 res) hj03347s1 (1384) 126 26.6 6.7 KIAA1844 ( 367 res) fj12009 ( 367) 114 24.2 8.9 KIAA0029 ( 974 res) ha00566 ( 974) 118 25.4 11 FLJ00139 ( 585 res) sh03241 ( 585) 114 24.6 11 KIAA0200 ( 1042 res) ha02508 (1042) 115 25.1 14 KIAA1305 ( 1819 res) fh04045s1 (1819) 118 25.9 14 KIAA1196 ( 851 res) fg01776 ( 851) 113 24.8 14 FLJ00176 ( 403 res) sj00934 ( 403) 108 23.6 15 KIAA1187 ( 813 res) fk03027 ( 813) 112 24.6 15 KIAA1204 ( 1445 res) fg03451 (1445) 114 25.3 17 KIAA0164 ( 929 res) ha02373 ( 929) 110 24.5 19 FLJ00252 ( 819 res) sj09394 ( 819) 109 24.3 19 FLJ00378 ( 855 res) sj00210 ( 855) 109 24.3 20 KIAA0268 ( 1193 res) ha07061 (1193) 110 24.7 22 KIAA0270 ( 345 res) ha06636 ( 345) 102 22.9 22 KIAA0442 ( 1266 res) hh03913 (1266) 110 24.7 22 KIAA0660 ( 490 res) hk01902 ( 490) 104 23.3 22 KIAA1523 ( 687 res) fh16681(revised) ( 687) 106 23.8 22 FLJ00092 ( 369 res) as00092 ( 369) 102 22.9 23 KIAA1768 ( 1207 res) ph00672(revised) (1207) 109 24.6 23 FLJ00295 ( 770 res) sh03877 ( 770) 106 23.9 24 FLJ00308 ( 233 res) sh05935 ( 233) 98 22.1 25 KIAA0045 ( 2005 res) ha00941 (2005) 111 25.2 25 KIAA0910 ( 1315 res) hg02207s1 (1315) 108 24.5 26 KIAA0337 ( 1609 res) hg01226 (1609) 109 24.8 27 KIAA1758 ( 1662 res) fh20539(revised) (1662) 109 24.8 27 KIAA1295 ( 550 res) fg01760 ( 550) 102 23.2 27 KIAA0792 ( 828 res) hk05691 ( 828) 103 23.6 31 KIAA1343 ( 520 res) fj00420 ( 520) 100 22.9 31 KIAA1522 ( 1044 res) fh14706(revised) (1044) 104 23.9 32 KIAA0324 ( 2800 res) ee08846s1 (2800) 110 25.3 32 KIAA0922 ( 790 res) hh02839a ( 790) 102 23.5 32 KIAA1802 ( 821 res) fj21631 ( 821) 102 23.5 33 FLJ00201 ( 705 res) sj04110 ( 705) 101 23.3 33 KIAA0777 ( 1171 res) hk05279 (1171) 104 24.0 34 FLJ00289 ( 245 res) sh02613 ( 245) 94 21.7 34 KIAA0350 ( 1062 res) hg01945 (1062) 103 23.8 35 KIAA0749 ( 678 res) hk04328 ( 678) 100 23.1 35 KIAA1236 ( 1840 res) pg00641 (1840) 106 24.5 36 FLJ00077 ( 278 res) as00077 ( 278) 94 21.8 36 FLJ00043 ( 1415 res) as00043 (1415) 104 24.1 37 FLJ00084 ( 641 res) as00084 ( 641) 99 23.0 37 KIAA0801 ( 1058 res) hg03949(revised) (1058) 102 23.7 37 KIAA1545 ( 968 res) fj14026s1 ( 968) 101 23.5 39 >>KIAA1668 ( 791 res) fh11717 (791 aa) initn: 100 init1: 62 opt: 149 Z-score: 107.5 bits: 28.7 E(): 0.86 Smith-Waterman score: 153; 28.646% identity (49.479% similar) in 192 aa overlap (24-195:233-409) 10 20 30 40 50 FLJ002 RLQILRRRPRPRKILAKETNRSVPRRLTRSWSPRRGESRSRGPSQAQVGGSGP ::. ..: .: : :. : . KIAA16 EARPQIPTKPRVPGKLQELASPPAGRPTPAPRKASESTTPAPPTPRPRSSLQQEN----- 210 220 230 240 250 60 70 80 90 100 FLJ002 WLLSTSGADS---GRGALLPRAASRPRPRALGAGVGKEG--APRHLPPLQTKAASQILEN :. .:..: :: :: :.:: :. .:: :::. :: : . : . KIAA16 -LVEQAGSSSLVNGRLHELPV----PKPR--GTPKPSEGTPAPRKDPPWITLV--QAEPK 260 270 280 290 300 110 120 130 140 150 FLJ002 GEEAPGPDPSLDRMLSSSSSVSSLNSSTVRREGGDPGG----RGVDPFRCV-------AP . :: : :: . :..: . :..: . .: . . .::. :: KIAA16 KKPAPLP-PSSSPGPPSQDSRQVENGGTEEVAQPSPTASLESKPYNPFEEEEEDKEEEAP 310 320 330 340 350 360 160 170 180 190 FLJ002 ACPSLAAGPTAAAPQ--PATYDP--GLKPPRCPRPRREPCERP : ::::..:. . :. : . : :. : :. ...: : KIAA16 AAPSLATSPALGHPESTPKSLHPWYGITPTSSPKTKKRPAPRAPSASPLALHASRLSHSE 370 380 390 400 410 420 KIAA16 PPSATPSPALSVESLSSESASQTAGAELLEPPAVPKSSSEPAVHAPGTPGNPVSLSTNSS 430 440 450 460 470 480 >>KIAA1506 ( 3309 res) ff04330 (3309 aa) initn: 129 init1: 81 opt: 151 Z-score: 103.3 bits: 30.0 E(): 1.5 Smith-Waterman score: 151; 24.044% identity (50.273% similar) in 183 aa overlap (11-188:1415-1585) 10 20 30 40 FLJ002 RLQILRRRPRPRKILAKETNRSVPRRLTRSWSPRRGESRS :: ... . :. : : :: .:. . KIAA15 ETTANRPSPVRDLCSSSTTNNDPYAKPPDTPRPVMTDQ----FPKSLGLSRSPVVSEQTA 1390 1400 1410 1420 1430 1440 50 60 70 80 90 FLJ002 RGPSQAQVGGSGPWLLSTSGADSGRGALLPRAASRP--RPRALGAGVGKEGAPRHLPPLQ .:: : : : . . :: . .: . .:: : : .: : .: . :: . KIAA15 KGPIAA--GTSDHFTKPSPRADVFQRQRIPDSYARPLLTPAPLDSGPGPFKTPMQPPPSS 1450 1460 1470 1480 1490 100 110 120 130 140 150 FLJ002 TKAASQILENGEEAPGPDPSLDRMLSSSSSVSSLNSSTVRREGGDPGGRG-VDPFRCVAP ... . ... . :: .: . ..... . ...:: .. . : : KIAA15 QDPYGSVSQASRRL-SVDP-YERPALTPRPIDNFSHN----QSNDPYSQPPLTPHPAVNE 1500 1510 1520 1530 1540 1550 160 170 180 190 FLJ002 --ACPSLAAGPTAAAPQPATYDPGLKPPRCPRPRREPCERP : :: : . .. .:.. :: .:: ::: KIAA15 SFAHPSRAFSQPGTISRPTSQDPYSQPPGTPRPVVDSYSQSSGTARSNTDPYSQPPGTPR 1560 1570 1580 1590 1600 1610 KIAA15 PTTVDPYSQQPQTPRPSTQTDLFVTPVTNQRHSDPYAHPPGTPRPGISVPYSQPPATPRP 1620 1630 1640 1650 1660 1670 >>KIAA1297 ( 2242 res) fg03883 (2242 aa) initn: 130 init1: 87 opt: 141 Z-score: 98.8 bits: 28.6 E(): 2.7 Smith-Waterman score: 164; 27.354% identity (50.673% similar) in 223 aa overlap (5-192:1029-1241) 10 20 30 FLJ002 RLQILRRRPRPRKILAKETNRSVPRRLTRSWSPR ::: .. : . : . : : .. : . KIAA12 PSQDQEAPSPEALPSPGQEPAAGASPRRGELRRGSSAESALPRAGPRELGRGLHKAASVE 1000 1010 1020 1030 1040 1050 40 50 60 70 FLJ002 RGESRSRGPSQAQV--GGSGP-----------WLLSTSGADSG-----RGALLPRAASRP . :: ::. ... :: : : .: ..: :: :: ..: KIAA12 LPQRRSPGPGATRLARGGLGEGEYAQRLQALRQRLLRGGPEDGKVSGLRGPLLESLGGRA 1060 1070 1080 1090 1100 1110 80 90 100 110 120 FLJ002 RPRALGAGVGKEGAPRHLPPLQTKA--ASQILENGEEAP-G-----------PDPSLD-R : .. ....:.::.: :::.... :. . .:: : : : : : KIAA12 RDPRMARAASSEAAPHHQPPLENRGLQKSSSFSQGEAEPRGRHRRAGAPLEIPVARLGAR 1120 1130 1140 1150 1160 1170 130 140 150 160 170 180 FLJ002 MLSSSSSVSSLNSSTVRREGGDPGGRGVDPFRCVAPACPSLAAGPTAAAPQPATYDPGLK :. : :.:.:. . . ..:. : : :. :. .: :.:..:. : :. . KIAA12 RLQESPSLSALSEA----QPSSPA-RPSAP----KPSTPK-SAEPSATTPSDAPQPPAPQ 1180 1190 1200 1210 1220 190 FLJ002 PP--RCPRPRREPCERP : . :.:: :: KIAA12 PAQDKAPEPRPEPVRASKPAPPPQALQTLALPLTPYAQIIQSLQLSGHAQGPSQGPAAPP 1230 1240 1250 1260 1270 1280 >>KIAA1357 ( 836 res) fj01906 (836 aa) initn: 81 init1: 49 opt: 126 Z-score: 93.4 bits: 26.2 E(): 5.3 Smith-Waterman score: 129; 29.341% identity (46.707% similar) in 167 aa overlap (32-183:25-183) 10 20 30 40 50 60 FLJ002 LQILRRRPRPRKILAKETNRSVPRRLTRSWSPRRGESRSRG-PSQAQVGGSGPWLLSTSG .: : : : : :. :.:: : KIAA13 SVKSEYTDPWGYYIDYTGMQEDPGNPAGGCSTSSGVPT-----GNGPVRHVQEG 10 20 30 40 70 80 90 100 110 FLJ002 ADSGR-----GALLPRAASRPRP-RALGAGVG---KEGAPRHLPPLQTKAASQILENGEE . . :.. :. : . :... . : . ..: : :. . : ::. KIAA13 SRATMPQVPGGSVKPKIMSPEKSHRVISPSSGYSSQSNTPTALTPVPVFLKSVSPANGKG 50 60 70 80 90 100 120 130 140 150 160 FLJ002 APGPD-P----SLDRMLSSSSSVSSLNSSTVRREGGDPGGRGVDPFRCVAPACPSLAAGP : : : :: .: ::: .::.::: . .: . .:: :: : . : KIAA13 KPKPKVPERKSSLISSVSISSSSTSLSSSTSTEGSGT--MKKLDPAVGSPPAPPPPPV-P 110 120 130 140 150 160 170 180 190 FLJ002 TAAAPQPATYDPGLKPPRCPRPRREPCERP . : :: .: : :: KIAA13 SPPFPCPADRSPFLPPPPPVTDCSQGSPLPHSPVFPPPPPEALIPFCSPPDWCLSPPRPA 170 180 190 200 210 220 >>KIAA1539 ( 543 res) fg02356 (543 aa) initn: 75 init1: 49 opt: 123 Z-score: 93.3 bits: 25.5 E(): 5.4 Smith-Waterman score: 123; 29.050% identity (45.810% similar) in 179 aa overlap (19-190:153-314) 10 20 30 40 FLJ002 RLQILRRRPRPRKILAKETNRSVPRRLTRSW-SPRRGESRSRGPSQAQ .: : ::.: :: : . : : : KIAA15 FSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESP-- 130 140 150 160 170 180 50 60 70 80 90 100 FLJ002 VGGSGPWLLSTSGADSGRGALLPRAASRPRPRALGAGVGKEGA--PRHLPPLQTKAASQI : . : : : :. .: ... : ::::. :. ::. : . . . KIAA15 -GPAPPGQLHT--LDTDLHSLAQIGGKSPV-----AGVGNGGSLWPRESPGTANGHSPEH 190 200 210 220 230 110 120 130 140 150 160 FLJ002 LENGEEAPGPDPSLDRMLSSSSS--VSSLNSSTV-RREGGDPGGRGVDPFRCVAPACPSL : ::: :. :.: .. . ::: . . . ::. :. : : .: . KIAA15 TPPGPGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLG----HP---TAANSSDA 240 250 260 270 280 170 180 190 FLJ002 AAGPTAAAPQPATYDPGLKPPRC-PRPRREPCERP : : . :. .: : : : : :: KIAA15 KATPFWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVP 290 300 310 320 330 340 >>FLJ00141 ( 1326 res) sh04092 (1326 aa) initn: 87 init1: 87 opt: 126 Z-score: 91.7 bits: 26.5 E(): 6.6 Smith-Waterman score: 156; 28.571% identity (50.246% similar) in 203 aa overlap (15-190:301-501) 10 20 30 40 FLJ002 RLQILRRRPRPRKILAKETNRSVPRRLTRSWSPR--RGESRSRG :: . .: : .:: ::: : .. : FLJ001 SGSCASHSPSGQEPGPSVPPLVPARSSSYHLALQPPQSRPSG-ARSESPRLSRKGGHERP 280 290 300 310 320 50 60 70 80 90 FLJ002 PSQAQVG--GSGPWLLSTSGA----DSGR-GALLPRAA----SRPRPRALGAGVGKEGAP :: . : ..: . : .: : :. :: .: : ::. .. :.: FLJ001 PSPGLRGLLTDSPAATVLAEARRATESPRLGGQLPVVAISLSEYPASGALSQPTSIPGSP 330 340 350 360 370 380 100 110 120 130 140 FLJ002 RHLPPLQTKAASQILENGEEAPGP---DPSLDRMLSSSSSVS----SLNSSTVRREGGDP . ::. . ..: .. :.: :. .:.:..: : . ..... . : : FLJ001 KFQPPVPAPR-NKIGTLQDRPPSPFREPPGSERVLTTSPSRQLVGRTFSDGLATRTLQPP 390 400 410 420 430 440 150 160 170 180 190 FLJ002 -----GGRGVDPFRCVAPACPSLAAGPTAAAPQPATYDPGL--KPPRCPRPRREPCERP : ::.: .: . : :::. . : .: :: : . . ::::: FLJ001 ESPRLGRRGLDSMRELPPLSPSLSRRALSPLPTRTTPDPKLNREVAESPRPRRWAAHGAS 450 460 470 480 490 500 FLJ001 PEDFSLTLGARGRRTRSPSPTLGESLAPHKGSFSGRLSPAYSLGSLTGASPCQSPCVQRK 510 520 530 540 550 560 >>KIAA0638 ( 1384 res) hj03347s1 (1384 aa) initn: 87 init1: 87 opt: 126 Z-score: 91.5 bits: 26.6 E(): 6.7 Smith-Waterman score: 156; 28.571% identity (50.246% similar) in 203 aa overlap (15-190:301-501) 10 20 30 40 FLJ002 RLQILRRRPRPRKILAKETNRSVPRRLTRSWSPR--RGESRSRG :: . .: : .:: ::: : .. : KIAA06 SGSCASHSPSGQEPGPSVPPLVPARSSSYHLALQPPQSRPSG-ARSESPRLSRKGGHERP 280 290 300 310 320 50 60 70 80 90 FLJ002 PSQAQVG--GSGPWLLSTSGA----DSGR-GALLPRAA----SRPRPRALGAGVGKEGAP :: . : ..: . : .: : :. :: .: : ::. .. :.: KIAA06 PSPGLRGLLTDSPAATVLAEARRATESPRLGGQLPVVAISLSEYPASGALSQPTSIPGSP 330 340 350 360 370 380 100 110 120 130 140 FLJ002 RHLPPLQTKAASQILENGEEAPGP---DPSLDRMLSSSSSVS----SLNSSTVRREGGDP . ::. . ..: .. :.: :. .:.:..: : . ..... . : : KIAA06 KFQPPVPAPR-NKIGTLQDRPPSPFREPPGSERVLTTSPSRQLVGRTFSDGLATRTLQPP 390 400 410 420 430 440 150 160 170 180 190 FLJ002 -----GGRGVDPFRCVAPACPSLAAGPTAAAPQPATYDPGL--KPPRCPRPRREPCERP : ::.: .: . : :::. . : .: :: : . . ::::: KIAA06 ESPRLGRRGLDSMRELPPLSPSLSRRALSPLPTRTTPDPKLNREVAESPRPRRWAAHGAS 450 460 470 480 490 500 KIAA06 PEDFSLTLGARGRRTRSPSPTLGESLAPHKGSFSGRLSPAYSLGSLTGASPCQSPCVQRK 510 520 530 540 550 560 >>KIAA1844 ( 367 res) fj12009 (367 aa) initn: 61 init1: 39 opt: 114 Z-score: 89.3 bits: 24.2 E(): 8.9 Smith-Waterman score: 114; 27.465% identity (54.930% similar) in 142 aa overlap (55-188:152-286) 30 40 50 60 70 80 FLJ002 RRLTRSWSPRRGESRSRGPSQAQVGGSGPWLLSTSGADSGRGALLPRA----ASRPRPRA .:: .. . : :::: .: : . KIAA18 EVMQATATSGFASGMEDKHSSDASSLLPQNILSQTSRHNDRDYRLPRAETHSSSTPVQHP 130 140 150 160 170 180 90 100 110 120 130 FLJ002 LGAGVGKEGAPRHLP--PLQTKAASQILENGEEAPGPDPSLDRMLSSSSSVSSLNSSTVR . : ..: .: :. .. : ... .: : . .:... . .::: . ..: : KIAA18 IKPVVHPTATPSTVPSSPFTLQSDHQP-KKSFDANGAS-TLSKLPTPTSSVPA--QKTER 190 200 210 220 230 140 150 160 170 180 190 FLJ002 REGGDPGGRGVDPFRCVAPACPSLAAG--PTAAAPQPATYDPGLKPPRCPRPRREPCERP .:. . : . :. :..:. : :.: ::.: : :. : :. : : KIAA18 KESTS-GDKPVS-HSCTTPSTSS-ASGLNPTSAPPTSASAVPVSPVPQSPIPPLLQDPNL 240 250 260 270 280 290 KIAA18 LRQLLPALQATLQLNNSNVDISKINEAAVTQASLQSIIHKFLTAGPSAFNITSLISQAAQ 300 310 320 330 340 350 >>KIAA0029 ( 974 res) ha00566 (974 aa) initn: 45 init1: 45 opt: 118 Z-score: 88.0 bits: 25.4 E(): 11 Smith-Waterman score: 118; 25.281% identity (53.933% similar) in 178 aa overlap (29-192:317-483) 10 20 30 40 50 FLJ002 RLQILRRRPRPRKILAKETNRSVPRRLTRSWSPRRGESRSRG--PSQAQVGG-SGPWL : :: ..: :. :. ..... :: . KIAA00 QIFRVNKDASGRSTNSHQSSTENELKYSEPRPWSSTDSDSSLRNLKPAVTKASSFSGISV 290 300 310 320 330 340 60 70 80 90 100 110 FLJ002 LSTSGADSGRGALLPRAASRPRPRALGAGVGKEGAPR-HLPPL-QTKAASQILENGEE-- : : : .:: . . : .. .: .. .:.: . ::. : . ::. . KIAA00 L-TRGDSSGSSKSIGRLSKTGQPF-----INPDGSPVVYNPPMTQQPVRSQVPGPPQPPL 350 360 370 380 390 400 120 130 140 150 160 FLJ002 -APGPDPSLDRMLSSSSSVSS-LNSSTVRREGGDPGGRGVDP----FRC-VAPACPSLAA :: .:. ....:......: .. .. :. :.. : :: :. :. :. .. KIAA00 PAPPQQPAANHIFSQQDNLGSQFSHMSLARQ---PSADGSDPHAAMFQSTVVLQSPQQSG 410 420 430 440 450 170 180 190 FLJ002 GPTAAAPQPATYDPGLKPPRCPRPRREPCERP .::: : . : :: : : : KIAA00 YIMTAAPPP--HPPPPPPPPPPPPPLPPGQPVPTAGYPASGHPVSQPVLQQQGYIQQPSP 460 470 480 490 500 510 >>FLJ00139 ( 585 res) sh03241 (585 aa) initn: 127 init1: 61 opt: 114 Z-score: 87.5 bits: 24.6 E(): 11 Smith-Waterman score: 128; 24.272% identity (48.058% similar) in 206 aa overlap (9-196:317-512) 10 20 30 FLJ002 RLQILRRRPRPRKILAKETNRSVPRRLTRSW---SPRR : : : .. : : ..: .: . FLJ001 QKAQEANKARPSAWEPAAGNSPARASVPAAPNPAATSATSVHVRSPARPSESRLAPTPTE 290 300 310 320 330 340 40 50 60 70 80 90 FLJ002 GESRSRGPSQAQVGGSGPWLLSTSGADSGRGALLPRAASRPRPRALGAGVGKEGAPRHLP :. : : ... .: :. ..: ... :. : .: ::: . .: :::: FLJ001 GKVRPRVTNSSPMGWSSA--APCTAAAASHPAV-PPSAPDPRPATPQGG----GAPRVAA 350 360 370 380 390 100 110 120 130 140 150 FLJ002 PLQTKAASQILENGEEAPGPDPSLDRMLSSSSSVSSLNSSTVRREGGDPGGRGVDPFRCV : : ..:. . :. :: .: .. .. ...:.: : . .::: : . FLJ001 PQTTLSSSSTSAATVDPPAWTPSASRTQQARNKF--FQTSAVP-PGTSLSGRGPTPSLVL 400 410 420 430 440 450 160 170 180 190 FLJ002 AP-------------ACPSL--AAGPTAAAPQPATYDPGLKPPRCPRPRREPCERP . : .: :..:. . :.::: . :. :. : .: FLJ001 SKDSSKEQARNFLKQALSALEEAGAPAPGRPSPATAAVPSSQPKTEAPQASPLAKPLQSS 460 470 480 490 500 510 FLJ001 SPRVLGLPSRMEPPAPLSTSSTSQASALPPAGRRNLAESSGVGRVGAGSRPKPEAPMAKG 520 530 540 550 560 570 196 residues in 1 query sequences 2210798 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:45:44 2009 done: Fri Feb 27 10:45:44 2009 Total Scan time: 0.370 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]