hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/shimazu/full/sj/sj06336/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  sj06336  600

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       Protein kinase C conserved region 2 (CalB)      67.7    1.5e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/1     146   256 ..     1    92 []    67.7  1.5e-15

Alignments of top-scoring domains:
C2: domain 1 of 1, from 146 to 256: score 67.7, E = 1.5e-15
                   *->tLtvkiisArnLp................DPYVkvs...........
                      + ++ i s +    ++ +    + ++++ DP+V+v+  + + + ++ 
     sj06336   146    KAKISIDSIQEVSegrqsevfqrypdgsfDPFVEVEiiglpvdcsre 192  

                   kTkvvkktlsgfNPvWnEesetFeFevpp...s.LeieVyDk.....dfi
                   +T+vv +++  fNP+W+E   t++F v+ ++ + +++ V+D+++ ++dfi
     sj06336   193 QTRVVDDNG--FNPTWEE---TLVFMVHMpeiAlVRFLVWDHdpigrDFI 237  

                   Grvtippnnahqhsadglihlsell.ggrh.kl<-*
                   G+ t+               +s++++g+rh  l   
     sj06336   238 GQRTLA--------------FSSMMpGYRHvYL    256  

//