hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/shimazu/full/sj/sj06336/interpro/cnk_1/seq.in
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Query:  sj06336  600

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       C2 domain                                       69.9    5.2e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/1     147   241 ..     1    88 []    69.9  5.2e-17

Alignments of top-scoring domains:
C2: domain 1 of 1, from 147 to 241: score 69.9, E = 5.2e-17
                   *->LrVtvieAknLppkDf.......kngksDPYVkvslggdkkd.qkkk
                       ++ + + +       ++  ++ + g+ DP+V+v++ g ++d ++ +
     sj06336   147    AKISIDSIQEVSEGRQsevfqryPDGSFDPFVEVEIIGLPVDcSREQ 193  

                   Tkvikkt.lNPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs
                   T+v+++++ NP+W+Et++F v+ p+ +  +++ V+D+d +g  df+G+ +
     sj06336   194 TRVVDDNgFNPTWEETLVFMVHMPEIAL-VRFLVWDHDPIG-RDFIGQRT 241  

                   <-*
                      
     sj06336     -     -    

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