# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sj06258.fasta.nr -Q ../query/FLJ00338.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00338, 114 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826945 sequences Expectation_n fit: rho(ln(x))= 5.0376+/-0.000183; mu= 6.4501+/- 0.010 mean_var=71.6051+/-13.634, 0's: 53 Z-trim: 56 B-trim: 7 in 1/65 Lambda= 0.151566 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|21748538|dbj|BAC03406.1| FLJ00338 protein [Homo ( 114) 770 176.2 9e-43 gi|38196971|gb|AAH22093.3| CNPY3 protein [Homo sap ( 136) 758 173.7 6.3e-42 gi|114607481|ref|XP_518480.2| PREDICTED: trinucleo ( 278) 758 173.9 1.1e-41 gi|74752319|sp|Q9BT09.1|CNPY3_HUMAN RecName: Full= ( 278) 758 173.9 1.1e-41 gi|119624522|gb|EAX04117.1| trinucleotide repeat c ( 153) 750 172.0 2.3e-41 gi|119624516|gb|EAX04111.1| trinucleotide repeat c ( 189) 750 172.0 2.7e-41 gi|119624518|gb|EAX04113.1| trinucleotide repeat c ( 278) 750 172.2 3.7e-41 gi|119624521|gb|EAX04116.1| trinucleotide repeat c ( 311) 750 172.2 4e-41 gi|119624525|gb|EAX04120.1| trinucleotide repeat c ( 332) 750 172.2 4.2e-41 gi|166216082|sp|A5GFQ5.1|CNPY3_PIG RecName: Full=P ( 283) 709 163.2 1.9e-38 gi|149732538|ref|XP_001501575.1| PREDICTED: simila ( 283) 695 160.2 1.6e-37 gi|73972976|ref|XP_851722.1| PREDICTED: similar to ( 279) 694 159.9 1.8e-37 gi|119624524|gb|EAX04119.1| trinucleotide repeat c ( 272) 688 158.6 4.4e-37 gi|122133327|sp|Q0P5N1.1|CNPY3_BOVIN RecName: Full ( 282) 688 158.6 4.5e-37 gi|149069417|gb|EDM18858.1| rCG43420, isoform CRA_ ( 152) 620 143.5 8.4e-33 gi|26349663|dbj|BAC38471.1| unnamed protein produc ( 151) 617 142.9 1.3e-32 gi|149069416|gb|EDM18857.1| rCG43420, isoform CRA_ ( 276) 620 143.7 1.3e-32 gi|148691592|gb|EDL23539.1| trinucleotide repeat c ( 172) 617 142.9 1.4e-32 gi|26349919|dbj|BAC38599.1| unnamed protein produc ( 172) 617 142.9 1.4e-32 gi|26327581|dbj|BAC27534.1| unnamed protein produc ( 251) 617 143.1 1.9e-32 gi|6841108|gb|AAF28907.1|AF161347_1 HSPC084 [Homo ( 142) 614 142.2 2e-32 gi|81906035|sp|Q9DAU1.1|CNPY3_MOUSE RecName: Full= ( 276) 617 143.1 2.1e-32 gi|187469175|gb|AAI66762.1| Cnpy3 protein [Rattus ( 276) 615 142.7 2.8e-32 gi|60359830|dbj|BAD90134.1| mFLJ00338 protein [Mus ( 243) 605 140.4 1.2e-31 gi|126310033|ref|XP_001363829.1| PREDICTED: hypoth ( 279) 593 137.8 8e-31 gi|149641503|ref|XP_001508790.1| PREDICTED: simila ( 588) 497 117.1 2.9e-24 gi|197127244|gb|ACH43742.1| putative trinucleotide ( 255) 463 109.4 2.7e-22 gi|197127245|gb|ACH43743.1| putative trinucleotide ( 255) 463 109.4 2.7e-22 gi|166216081|sp|A3KNS2.1|CNPY3_DANRE RecName: Full ( 276) 352 85.1 5.8e-15 gi|86355183|dbj|BAE78826.1| Canopy3 [Danio rerio] ( 276) 348 84.3 1.1e-14 gi|166216084|sp|Q6GN40.2|CNPY3_XENLA RecName: Full ( 243) 347 84.0 1.1e-14 gi|49118649|gb|AAH73680.1| Cnpy3 protein [Xenopus ( 258) 347 84.0 1.2e-14 gi|166216085|sp|Q5HZV5.2|CNPY3_XENTR RecName: Full ( 242) 333 80.9 9.3e-14 gi|57032832|gb|AAH88872.1| Tnrc5-prov protein [Xen ( 277) 333 81.0 1e-13 gi|165971385|gb|AAI58507.1| Tnrc5 protein [Xenopus ( 302) 333 81.0 1.1e-13 gi|47215377|emb|CAG02193.1| unnamed protein produc ( 251) 329 80.1 1.8e-13 gi|53733772|gb|AAH83297.1| Tnrc5 protein [Danio re ( 212) 317 77.4 9.5e-13 gi|118087769|ref|XP_001232829.1| PREDICTED: simila ( 531) 321 78.6 1e-12 gi|114607483|ref|XP_001135570.1| PREDICTED: trinuc ( 253) 315 77.0 1.5e-12 gi|119624519|gb|EAX04114.1| trinucleotide repeat c ( 208) 285 70.4 1.2e-10 gi|114614958|ref|XP_001146958.1| PREDICTED: simila ( 227) 232 58.8 3.9e-07 gi|114614956|ref|XP_519249.2| PREDICTED: similar t ( 247) 232 58.9 4.2e-07 gi|74728482|sp|Q8N129.1|CNPY4_HUMAN RecName: Full= ( 248) 232 58.9 4.2e-07 gi|73958028|ref|XP_546963.2| PREDICTED: similar to ( 241) 231 58.6 4.8e-07 gi|210103358|gb|EEA51394.1| hypothetical protein B ( 278) 228 58.0 8.4e-07 gi|198426683|ref|XP_002129613.1| PREDICTED: simila ( 243) 227 57.8 8.8e-07 gi|114618544|ref|XP_001140308.1| PREDICTED: simila ( 117) 221 56.2 1.3e-06 gi|127796496|gb|AAH19903.2| CNPY4 protein [Homo sa ( 246) 223 56.9 1.6e-06 gi|149461458|ref|XP_001514334.1| PREDICTED: simila ( 191) 221 56.4 1.8e-06 gi|149028529|gb|EDL83901.1| similar to hypothetica ( 247) 222 56.7 1.9e-06 >>gi|21748538|dbj|BAC03406.1| FLJ00338 protein [Homo sap (114 aa) initn: 770 init1: 770 opt: 770 Z-score: 924.1 bits: 176.2 E(): 9e-43 Smith-Waterman score: 770; 100.000% identity (100.000% similar) in 114 aa overlap (1-114:1-114) 10 20 30 40 50 60 FLJ003 QCDVLVEEFEEVIEDWYRNHQEEDLTEFLCANHVLKGKDTSCLAEQWSGKKGDTAALGGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 QCDVLVEEFEEVIEDWYRNHQEEDLTEFLCANHVLKGKDTSCLAEQWSGKKGDTAALGGK 10 20 30 40 50 60 70 80 90 100 110 FLJ003 KSKKKSSRAKAAGGRSSSSKQRKELGGLEGDPSPEEDEGIQKASPLTPSPPDEL :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 KSKKKSSRAKAAGGRSSSSKQRKELGGLEGDPSPEEDEGIQKASPLTPSPPDEL 70 80 90 100 110 >>gi|38196971|gb|AAH22093.3| CNPY3 protein [Homo sapiens (136 aa) initn: 758 init1: 758 opt: 758 Z-score: 908.9 bits: 173.7 E(): 6.3e-42 Smith-Waterman score: 758; 99.123% identity (99.123% similar) in 114 aa overlap (1-114:23-136) 10 20 30 FLJ003 QCDVLVEEFEEVIEDWYRNHQEEDLTEFLCANHVLKGK :::::::::::::::::::::::::::::::::::::: gi|381 VVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTEFLCANHVLKGK 10 20 30 40 50 60 40 50 60 70 80 90 FLJ003 DTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSSSKQRKELGGLEGDPSPEEDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|381 DTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSSSKQRKELGGLEGDPSPEEDE 70 80 90 100 110 120 100 110 FLJ003 GIQKASPLTPSPPDEL ::::::::: :::::: gi|381 GIQKASPLTHSPPDEL 130 >>gi|114607481|ref|XP_518480.2| PREDICTED: trinucleotide (278 aa) initn: 758 init1: 758 opt: 758 Z-score: 904.6 bits: 173.9 E(): 1.1e-41 Smith-Waterman score: 758; 99.123% identity (99.123% similar) in 114 aa overlap (1-114:165-278) 10 20 30 FLJ003 QCDVLVEEFEEVIEDWYRNHQEEDLTEFLC :::::::::::::::::::::::::::::: gi|114 NLVHKGVKVVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTEFLC 140 150 160 170 180 190 40 50 60 70 80 90 FLJ003 ANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSSSKQRKELGGLEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSSSKQRKELGGLEG 200 210 220 230 240 250 100 110 FLJ003 DPSPEEDEGIQKASPLTPSPPDEL ::::::::::::::::: :::::: gi|114 DPSPEEDEGIQKASPLTHSPPDEL 260 270 >>gi|74752319|sp|Q9BT09.1|CNPY3_HUMAN RecName: Full=Prot (278 aa) initn: 758 init1: 758 opt: 758 Z-score: 904.6 bits: 173.9 E(): 1.1e-41 Smith-Waterman score: 758; 99.123% identity (99.123% similar) in 114 aa overlap (1-114:165-278) 10 20 30 FLJ003 QCDVLVEEFEEVIEDWYRNHQEEDLTEFLC :::::::::::::::::::::::::::::: gi|747 NLVHKGVKVVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTEFLC 140 150 160 170 180 190 40 50 60 70 80 90 FLJ003 ANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSSSKQRKELGGLEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 ANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSSSKQRKELGGLEG 200 210 220 230 240 250 100 110 FLJ003 DPSPEEDEGIQKASPLTPSPPDEL ::::::::::::::::: :::::: gi|747 DPSPEEDEGIQKASPLTHSPPDEL 260 270 >>gi|119624522|gb|EAX04117.1| trinucleotide repeat conta (153 aa) initn: 750 init1: 750 opt: 750 Z-score: 898.7 bits: 172.0 E(): 2.3e-41 Smith-Waterman score: 750; 98.246% identity (98.246% similar) in 114 aa overlap (1-114:40-153) 10 20 30 FLJ003 QCDVLVEEFEEVIEDWYRNHQEEDLTEFLC :::::::::::::::::::::::::::::: gi|119 NLVHKGVKVVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTEFLC 10 20 30 40 50 60 40 50 60 70 80 90 FLJ003 ANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSSSKQRKELGGLEG :::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: gi|119 ANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSIRAKAAGGRSSSSKQRKELGGLEG 70 80 90 100 110 120 100 110 FLJ003 DPSPEEDEGIQKASPLTPSPPDEL ::::::::::::::::: :::::: gi|119 DPSPEEDEGIQKASPLTHSPPDEL 130 140 150 >>gi|119624516|gb|EAX04111.1| trinucleotide repeat conta (189 aa) initn: 750 init1: 750 opt: 750 Z-score: 897.5 bits: 172.0 E(): 2.7e-41 Smith-Waterman score: 750; 98.246% identity (98.246% similar) in 114 aa overlap (1-114:76-189) 10 20 30 FLJ003 QCDVLVEEFEEVIEDWYRNHQEEDLTEFLC :::::::::::::::::::::::::::::: gi|119 NLVHKGVKVVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTEFLC 50 60 70 80 90 100 40 50 60 70 80 90 FLJ003 ANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSSSKQRKELGGLEG :::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: gi|119 ANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSIRAKAAGGRSSSSKQRKELGGLEG 110 120 130 140 150 160 100 110 FLJ003 DPSPEEDEGIQKASPLTPSPPDEL ::::::::::::::::: :::::: gi|119 DPSPEEDEGIQKASPLTHSPPDEL 170 180 >>gi|119624518|gb|EAX04113.1| trinucleotide repeat conta (278 aa) initn: 750 init1: 750 opt: 750 Z-score: 895.2 bits: 172.2 E(): 3.7e-41 Smith-Waterman score: 750; 98.246% identity (98.246% similar) in 114 aa overlap (1-114:165-278) 10 20 30 FLJ003 QCDVLVEEFEEVIEDWYRNHQEEDLTEFLC :::::::::::::::::::::::::::::: gi|119 NLVHKGVKVVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTEFLC 140 150 160 170 180 190 40 50 60 70 80 90 FLJ003 ANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSSSKQRKELGGLEG :::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: gi|119 ANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSIRAKAAGGRSSSSKQRKELGGLEG 200 210 220 230 240 250 100 110 FLJ003 DPSPEEDEGIQKASPLTPSPPDEL ::::::::::::::::: :::::: gi|119 DPSPEEDEGIQKASPLTHSPPDEL 260 270 >>gi|119624521|gb|EAX04116.1| trinucleotide repeat conta (311 aa) initn: 750 init1: 750 opt: 750 Z-score: 894.5 bits: 172.2 E(): 4e-41 Smith-Waterman score: 750; 98.246% identity (98.246% similar) in 114 aa overlap (1-114:198-311) 10 20 30 FLJ003 QCDVLVEEFEEVIEDWYRNHQEEDLTEFLC :::::::::::::::::::::::::::::: gi|119 NLVHKGVKVVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTEFLC 170 180 190 200 210 220 40 50 60 70 80 90 FLJ003 ANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSSSKQRKELGGLEG :::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: gi|119 ANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSIRAKAAGGRSSSSKQRKELGGLEG 230 240 250 260 270 280 100 110 FLJ003 DPSPEEDEGIQKASPLTPSPPDEL ::::::::::::::::: :::::: gi|119 DPSPEEDEGIQKASPLTHSPPDEL 290 300 310 >>gi|119624525|gb|EAX04120.1| trinucleotide repeat conta (332 aa) initn: 750 init1: 750 opt: 750 Z-score: 894.1 bits: 172.2 E(): 4.2e-41 Smith-Waterman score: 750; 98.246% identity (98.246% similar) in 114 aa overlap (1-114:219-332) 10 20 30 FLJ003 QCDVLVEEFEEVIEDWYRNHQEEDLTEFLC :::::::::::::::::::::::::::::: gi|119 NLVHKGVKVVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTEFLC 190 200 210 220 230 240 40 50 60 70 80 90 FLJ003 ANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSSSKQRKELGGLEG :::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: gi|119 ANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSIRAKAAGGRSSSSKQRKELGGLEG 250 260 270 280 290 300 100 110 FLJ003 DPSPEEDEGIQKASPLTPSPPDEL ::::::::::::::::: :::::: gi|119 DPSPEEDEGIQKASPLTHSPPDEL 310 320 330 >>gi|166216082|sp|A5GFQ5.1|CNPY3_PIG RecName: Full=Prote (283 aa) initn: 539 init1: 503 opt: 709 Z-score: 846.6 bits: 163.2 E(): 1.9e-38 Smith-Waterman score: 709; 92.982% identity (96.491% similar) in 114 aa overlap (1-114:173-283) 10 20 30 FLJ003 QCDVLVEEFEEVIEDWYRNHQEEDLTEFLC ::::::::::::::::::::::::::.::: gi|166 NLVHKGVKVVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTQFLC 150 160 170 180 190 200 40 50 60 70 80 90 FLJ003 ANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSSSKQRKELGGLEG :::::::::::::::::::::::::::::::::::::::::.:: .:::::::::.:: gi|166 ANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKASGG---GSKQRKELGGIEG 210 220 230 240 250 100 110 FLJ003 DPSPEEDEGIQKASPLTPSPPDEL ::::::::::::::::: :::::: gi|166 DPSPEEDEGIQKASPLTHSPPDEL 260 270 280 114 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 16:40:38 2009 done: Fri Feb 27 16:44:26 2009 Total Scan time: 534.110 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]