hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/shimazu/full/sj/sj06165/interpro/cnk_1/seq.in
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Query:  sj06165  656

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PLCYc    Phospholipase C, catalytic domain (part); do   198.4    6.4e-55   1
C2       Protein kinase C conserved region 2 (CalB)      86.4    3.4e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PLCYc      1/1      71   185 ..     1   119 []   198.4  6.4e-55
C2         1/1     204   312 ..     1    92 []    86.4  3.4e-21

Alignments of top-scoring domains:
PLCYc: domain 1 of 1, from 71 to 185: score 198.4, E = 6.4e-55
                   *->lseLvsycapvkFrsfelaeekdnafyemsSfsEtkaakkllekapt
                      ls+Lv y ++v  + +e +  +   ++++sSfsEtk a ++l+++p+
     sj06165    71    LSDLVKYTKSVATHDIEMEAAS---SWQVSSFSETK-AHQILQQKPA 113  

                   dfvryNqrqLsRvYPkGtRvDSSNYnPqvfWnaGcQMVALNfQTpDkaMq
                   + +r+Nq+qLsR+YP+  RvDSSNYnPq+fWnaGcQMVALN+Q  ++++q
     sj06165   114 QYLRFNQQQLSRIYPSSYRVDSSNYNPQPFWNAGCQMVALNYQSEGRMLQ 163  

                   lNqGmFraNGgCGYVLKPefLR<-*
                   lN ++F+aNGgCGYVLKP ++    
     sj06165   164 LNRAKFSANGGCGYVLKPGCMC    185  

C2: domain 1 of 1, from 204 to 312: score 86.4, E = 3.4e-21
                   *->tLtvkiisArnLp..............DPYVkvs...........kT
                      +L ++iis+++Lp+++++  ++++   DP+V+v+  + + + ++ +T
     sj06165   204    QLVLRIISGQQLPkprdsmlgdrgeiiDPFVEVEiiglpvdcsreQT 250  

                   kvvkktlsgfNPvWnEesetFeFevpp...s.LeieVyDk.....dfiGr
                   +vv +++  fNP+W+E   t++F v+ ++ + +++ V+D+++ ++dfiG+
     sj06165   251 RVVDDNG--FNPTWEE---TLVFMVHMpeiAlVRFLVWDHdpigrDFIGQ 295  

                   vtippnnahqhsadglihlsell.ggrh.kl<-*
                    t+               +s++++g+rh  l   
     sj06165   296 RTLA--------------FSSMMpGYRHvYL    312  

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