hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/shimazu/full/sj/sj06062/interpro/cnk_1/seq.in
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Query:  sj06062  1105

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MYSc     Myosin. Large ATPases.                        1368.2          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MYSc       1/1      56   736 ..     1   771 []  1368.2        0

Alignments of top-scoring domains:
MYSc: domain 1 of 1, from 56 to 736: score 1368.2, E = 0
                   *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav
                       ++ k+ gV+DmvlL++++E+a+  NL+kR++ d I+TYiG+vL++v
     sj06062    56    SHNVKQSGVDDMVLLPQITEDAIAANLRKRFMDDYIFTYIGSVLISV 102  

                   NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre
                   NP+kq+ p +td  i++Y+      G  ++E+pPH++A+ D++YrnMl +
     sj06062   103 NPFKQM-PYFTDREIDLYQ------GAAQYENPPHIYALTDNMYRNMLID 145  

                   keNQsIiISGESGAGKTEatKkimqYLAavsg...svesvedqiLesNPi
                    eNQ++iISGESGAGKT+a+K+im Y++ vs+++++v++v+d iL+sNP+
     sj06062   146 CENQCVIISGESGAGKTVAAKYIMGYISKVSAggeKVQHVKDIILQSNPL 195  

                   LEAFGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEKSRVVsQ
                   LEAFGNAKTvRNnNSSRFGK++eI+F+++G++ G+kI+n+LLEKSRVV Q
     sj06062   196 LEAFGNAKTVRNNNSSRFGKYFEIQFSRGGEPDGGKISNFLLEKSRVVMQ 245  

                   akgERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggtpfank
                   +++ERN+HI YQLL+Gas+e++++lgL +    p++Y+YLnq++      
     sj06062   246 NENERNFHIYYQLLEGASQEQRQNLGLMT----PDYYYYLNQSD------ 285  

                   ryssgcltvdgiDDaeeFkeTdEvtlkAmrvlGfseeEqesIFrilAAIL
                        +++vdg DD  +F e    tl+Am+v+G++ + q+ +++++A+IL
     sj06062   286 -----TYQVDGTDDRSDFGE----TLSAMQVIGIPPSIQQLVLQLVAGIL 326  

                   HLGNieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeLekaLtk
                   HLGNi+F e++   ++a v      + + l + A+LLg+d+  L++ Lt+
     sj06062   327 HLGNISFCEDG---NYARV-----ESVDLLAFPAYLLGIDSGRLQEKLTS 368  

                   Rkiktggeg.gsvitkplnveqAvyaRDALAKaiYsRLFdWLVkrINksl
                   Rk+  +++g+++ i+++lnveqA+y+RDALAK++Y+RLFd+LV+ IN+++
     sj06062   369 RKMDSRWGGrSESINVTLNVEQAAYTRDALAKGLYARLFDFLVEAINRAM 418  

                   ....sayfIGVLDIyGFEiFekNSFEQfCINyaNEKLQQfFnqhvFKlEQ
                   ++++  y+IGVLDIyGFEiF+kN+FEQfCIN++NEKLQQ+F+++++K EQ
     sj06062   419 qkpqEEYSIGVLDIYGFEIFQKNGFEQFCINFVNEKLQQIFIELTLKAEQ 468  

                   EEYerEGIeWtfIdFfliDNQpciDLIEkKgkrPlGIlslLDEeClf.HA
                   EEY++EGI Wt+I++f  +N++++DLIE+K+  P+GI+s LD++C + HA
     sj06062   469 EEYVQEGIRWTPIQYF--NNKVVCDLIENKL-SPPGIMSVLDDVCATmHA 515  

                   qPkgTDqtFleKLnkalyhqhhkkhphfskprkSlkkgkpkkrfgrtaFi
                   ++ g Dqt+l+KL+ a      ++h+hf +              ++++F+
     sj06062   516 TGGGADQTLLQKLQAA-----VGTHEHFNS--------------WSAGFV 546  

                   ikHYAGdVtYnveGFLeKNkDtLfedlieLlqsSknpliasLFpeeadqs
                   i+HYAG+V+Y+v GF+e+N+D+Lf dlieL+q+S + +++ LFpe  d +
     sj06062   547 IHHYAGKVSYDVSGFCERNRDVLFSDLIELMQTSEQAFLRMLFPEKLDGD 596  

                   ssaakekssggagksrkagrrepskgtisskkrppTvGsqFk.sLneLme
                                                +k+rp+T+Gs++k+++n+L++
     sj06062   597 -----------------------------KKGRPSTAGSKIKkQANDLVA 617  

                   tLnstnPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvLEniRIRraGFP
                   tL+ ++PH+IRCIKPNe+K+p+++++ +V+hQ+ ylG+ EniR+RraGF+
     sj06062   618 TLMRCTPHYIRCIKPNETKRPRDWEENRVKHQVEYLGLKENIRVRRAGFA 667  

                   yRlpfdeFlqRYkvLlpktwppwggewknrlfgdakkacealLqslglgi
                   yR+ f++FlqRY +L p twp+w+        gd++++++ lL +++   
     sj06062   668 YRRQFAKFLQRYAILTPETWPRWR--------GDERQGVQHLLRAVN--- 706  

                   egdnldeeeyqiGkTKvFlRnpgqlaeLEelRee<-*
                       +++++yq+G TKvF +np++l++LEe+Re+   
     sj06062   707 ----MEPDQYQMGSTKVFVKNPESLFLLEEVRER    736  

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