hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/shimazu/full/sj/sj06062/interpro/cnk_1/seq.in
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Query:  sj06062  1105

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
Myosin_head   Myosin head (motor domain)               1129.6          0   1
Myosin_tail_2 Myosin tail                               255.5    7.5e-73   1
IQ            IQ calmodulin-binding motif                16.7       0.57   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Myosin_head     1/1      64   722 ..     1   795 []  1129.6        0
IQ              1/1     739   759 ..     1    21 []    16.7     0.57
Myosin_tail_2   1/1     761   963 ..     1   241 []   255.5  7.5e-73

Alignments of top-scoring domains:
Myosin_head: domain 1 of 1, from 64 to 722: score 1129.6, E = 0
                   *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrlp
                      v+D+v+L++++E+++ +NL+kR++  d I TY+G vL+svNP+k+ p
     sj06062    64    VDDMVLLPQITEDAIAANLRKRFM-DDYIFTYIGSVLISVNPFKQMP 109  

                   iYteeiiakYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA
                    +t++ i+ Y G  ++E+pPHi+A+ d++YR+Ml d eNQ+++isGESGA
     sj06062   110 YFTDREIDLYQGAAQYENPPHIYALTDNMYRNMLIDCENQCVIISGESGA 159  

                   GKTEntKkvmqYlAsvsgstpkvssaevtpnkeegsledqiLqsNPiLEA
                   GKT+++K++m Y+  vs++++kv             ++d iLqsNP+LEA
     sj06062   160 GKTVAAKYIMGYISKVSAGGEKVQ-----------HVKDIILQSNPLLEA 198  

                   FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy
                   FGNAKT+RNNNSSRFGK++eIqF  +G +     GgkI++ LLEKSRVv 
     sj06062   199 FGNAKTVRNNNSSRFGKYFEIQFSRGGEP----DGGKISNFLLEKSRVVM 244  

                   QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc
                   Q+e ERNFHI YQLL gas+++ +++L+L +   p++Y YLnqs     +
     sj06062   245 QNENERNFHIYYQLLEGASQEQ-RQNLGLMT---PDYYYYLNQSD----T 286  

                   ytvyrrDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNie
                   y v    dg DD   F +t++A+ +iG++ + q+ +++++A+ILhLGNi 
     sj06062   287 YQV----DGTDDRSDFGETLSAMQVIGIPPSIQQLVLQLVAGILHLGNIS 332  

                   GFkqdqatTGkeeqAGvtvsedteealeiiaeLLGvDaeeLekaLlsrri
                    F +d     +  +A    +e+ +  l   a LLG+D++ L+ +L+sr++
     sj06062   333 -FCEDG----N--YA---RVESVDL-LAFPAYLLGIDSGRLQEKLTSRKM 371  

                   ktGgggkrretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsa
                     +  g+r+e +++ +nveqA+y RDALAK++Y RLFd++Ve iN+a+++
     sj06062   372 DSR-WGGRSESINVTLNVEQAAYTRDALAKGLYARLFDFLVEAINRAMQK 420  

                   keQasdSrGGqaaegdDTVSITVVdlPraaldkranfIGvLDIyGFEIFa
                   ++                               + + IGvLDIyGFEIF 
     sj06062   421 PQ-------------------------------EEYSIGVLDIYGFEIF- 438  

                   ekNSFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDnq
                   +kN+FEQ+cIN+vNEKLQQ+F+++++k+EQEEY++EgI Wt+I+y ++n+
     sj06062   439 QKNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVQEGIRWTPIQY-FNNK 487  

                   acidLIEkKmkPpGIlslLDEeCrfPka....tDqtFldKLlqtfsskhp
                    ++dLIE+K  PpGI+s LD++C +++a++++ Dqt+l+KL  ++ + h 
     sj06062   488 VVCDLIENKLSPPGIMSVLDDVCATMHAtgggADQTLLQKLQAAV-GTHE 536  

                   rlthFaqkpgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfd
                      hF  +             ++F i+HYAG+V Y+++gf+e N+D+Lf 
     sj06062   537 ---HF-NSW-----------SAGFVIHHYAGKVSYDVSGFCERNRDVLFS 571  

                   dlisllksSsdvpllaeLFpeeelseaAnrrnkapdfeadfdeeeaaaks
                   dli+l++ S    +l+ LFpe +                           
     sj06062   572 DLIELMQTSEQ-AFLRMLFPEKLD-------------------------- 594  

                   aklgsgkgksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIK
                           +++k+ ++  T+gs++k + + L++tL  +   +PH++RCIK
     sj06062   595 --------GDKKG-RP-STAGSKIKKQANDLVATLMRC---TPHYIRCIK 631  

                   PNekKkagqFDnslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYr
                   PNe K+++++++ +V+hQ+ +lG+ E +iR+rraGF++R  f++FlqRY 
     sj06062   632 PNETKRPRDWEENRVKHQVEYLGLKE-NIRVRRAGFAYRRQFAKFLQRYA 680  

                   lLapktwppgfrpkwvgdakkgceliLqslrqtpgnldkeeyrfGkTKiF
                   +L+p+tw     p+w gd+++g++ +L +      n+++++y++G TK+F
     sj06062   681 ILTPETW-----PRWRGDERQGVQHLLRAV-----NMEPDQYQMGSTKVF 720  

                   fR<-*
                    +   
     sj06062   721 VK    722  

IQ: domain 1 of 1, from 739 to 759: score 16.7, E = 0.57
                   *->rraaikIQaawRGylaRkryk<-*
                         a +IQ+awR+++a ++y+   
     sj06062   739    DGFARTIQKAWRRHVAVRKYE    759  

Myosin_tail_2: domain 1 of 1, from 761 to 963: score 255.5, E = 7.5e-73
                   *->qKvvAseiFkGKKeryreSlnsvRlFaGDYLdlsnInpkllkllgse
                      ++ +As i+ +KKer+r+S+n  R+F+GDYL+l++ +p+l ++lg+ 
     sj06062   761    MREEASNILLNKKERRRNSIN--RNFVGDYLGLEE-RPELRQFLGKR 804  

                   ggqiideLrkdFgkVlFadkgevLViKfdRkLggKprrRqLlLTdralYl
                   +            +V+Fad     V+K+dR  ++Kp +R+L+LT++ +Y+
     sj06062   805 E------------RVDFADS----VTKYDR--RFKPIKRDLILTPKCVYV 836  

                   vdqkkkkkgpEKdpktykvKrrIplaaitgvSlSslsDnllVIHikpadl
                   ++++k+kkgpEK++  +++K++++++a++gvSlS+ +D+++++       
     sj06062   837 IGREKVKKGPEKGQVCEVLKKKVDIQALRGVSLSTRQDDFFILQ------ 880  

                   adkqgDlvlasghKqPkkeeRitElvtvLvktyksatggklnvnfsdsie
                     +  D +l+s +K        tE+v +L+k +++at+++l++ fsd+++
     sj06062   881 -EDAADSFLESVFK--------TEFVSLLCKRFEEATRRPLPLTFSDTLQ 921  

                   ynlkkekfdpGkkktvkfqkdassgvklvifkkkkghlvsilpp<-*
                   +++kke++++G+++ v+f++++++ +  v +  ++   vs++++   
     sj06062   922 FRVKKEGWGGGGTRSVTFSRGFGDLA--VLKVGGRTLTVSVGDG    963  

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