# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sj05987.fasta.nr -Q ../query/FLJ00394.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00394, 238 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826775 sequences Expectation_n fit: rho(ln(x))= 5.1413+/-0.000188; mu= 10.0637+/- 0.011 mean_var=79.8029+/-15.543, 0's: 42 Z-trim: 42 B-trim: 2793 in 1/65 Lambda= 0.143570 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|21748634|dbj|BAC03454.1| FLJ00394 protein [Homo ( 238) 1678 356.3 2.5e-96 gi|114674732|ref|XP_512287.2| PREDICTED: similar t ( 283) 399 91.4 1.6e-16 gi|33873602|gb|AAH07414.2| UBXN6 protein [Homo sap ( 293) 399 91.4 1.6e-16 gi|114674730|ref|XP_001138590.1| PREDICTED: UBX do ( 345) 399 91.5 1.8e-16 gi|13160494|gb|AAK13258.1|AF272894_1 UBX domain-co ( 388) 399 91.5 2e-16 gi|90085559|dbj|BAE91520.1| unnamed protein produc ( 388) 399 91.5 2e-16 gi|109122978|ref|XP_001102049.1| PREDICTED: simila ( 388) 399 91.5 2e-16 gi|114674728|ref|XP_001138764.1| PREDICTED: UBX do ( 388) 399 91.5 2e-16 gi|114674726|ref|XP_001138677.1| PREDICTED: UBX do ( 417) 399 91.6 2.1e-16 gi|109122976|ref|XP_001102137.1| PREDICTED: simila ( 441) 399 91.6 2.2e-16 gi|90076632|dbj|BAE87996.1| unnamed protein produc ( 441) 399 91.6 2.2e-16 gi|30913412|sp|Q9BZV1.1|UBXN6_HUMAN RecName: Full= ( 441) 399 91.6 2.2e-16 gi|194212484|ref|XP_001916732.1| PREDICTED: simila ( 621) 332 77.8 4.3e-12 gi|73987385|ref|XP_542155.2| PREDICTED: similar to ( 417) 329 77.1 4.9e-12 gi|16877752|gb|AAH17113.1| UBXN6 protein [Homo sap ( 196) 321 75.1 8.9e-12 gi|109896150|sp|Q2KIJ6.1|UBXN6_BOVIN RecName: Full ( 441) 320 75.2 1.9e-11 gi|149028228|gb|EDL83666.1| similar to UBX domain ( 395) 282 67.3 4e-09 gi|149028227|gb|EDL83665.1| similar to UBX domain ( 441) 282 67.4 4.4e-09 gi|47847530|dbj|BAD21437.1| mFLJ00394 protein [Mus ( 310) 279 66.6 5.2e-09 gi|16741117|gb|AAH16412.1| Ubxn6 protein [Mus musc ( 389) 279 66.7 6.1e-09 gi|12843710|dbj|BAB26082.1| unnamed protein produc ( 390) 279 66.7 6.1e-09 gi|148691763|gb|EDL23710.1| UBX domain containing ( 396) 279 66.7 6.2e-09 gi|74148256|dbj|BAE36284.1| unnamed protein produc ( 396) 279 66.7 6.2e-09 gi|26349745|dbj|BAC38512.1| unnamed protein produc ( 396) 279 66.7 6.2e-09 gi|30913410|sp|Q99PL6.1|UBXN6_MOUSE RecName: Full= ( 442) 279 66.7 6.7e-09 gi|126323129|ref|XP_001365542.1| PREDICTED: simila ( 439) 253 61.3 2.8e-07 gi|126340527|ref|XP_001362225.1| PREDICTED: simila ( 439) 253 61.3 2.8e-07 gi|118103172|ref|XP_425889.2| PREDICTED: similar t ( 431) 220 54.5 3.1e-05 gi|118103170|ref|XP_001232670.1| PREDICTED: simila ( 438) 220 54.5 3.2e-05 gi|47216643|emb|CAG04841.1| unnamed protein produc ( 411) 201 50.5 0.00046 gi|115530815|emb|CAL49395.1| UBX domain containing ( 194) 194 48.8 0.00073 gi|94732431|emb|CAK04066.1| novel protein (zgc:664 ( 437) 195 49.3 0.0012 gi|33416455|gb|AAH55680.1| UBX domain protein 6 [D ( 437) 195 49.3 0.0012 gi|49522368|gb|AAH75367.1| UBX domain containing 1 ( 427) 194 49.1 0.0013 gi|122936392|gb|AAI30085.1| LOC100037069 protein [ ( 428) 185 47.3 0.0048 gi|115636696|ref|XP_001190437.1| PREDICTED: simila ( 438) 183 46.8 0.0065 >>gi|21748634|dbj|BAC03454.1| FLJ00394 protein [Homo sap (238 aa) initn: 1678 init1: 1678 opt: 1678 Z-score: 1885.6 bits: 356.3 E(): 2.5e-96 Smith-Waterman score: 1678; 100.000% identity (100.000% similar) in 238 aa overlap (1-238:1-238) 10 20 30 40 50 60 FLJ003 VDRAWLSREWGRGASGQEGPAWGSLHCTVTPMSCHAVEDPEEFYVLSETTLAQPQSLERH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 VDRAWLSREWGRGASGQEGPAWGSLHCTVTPMSCHAVEDPEEFYVLSETTLAQPQSLERH 10 20 30 40 50 60 70 80 90 100 110 120 FLJ003 KEQLLAGEPVRAKLDRQRRVFQPSPLASQFELPGDFFNPHSRGDQAGAEAQVGLTSAEQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 KEQLLAGEPVRAKLDRQRRVFQPSPLASQFELPGDFFNPHSRGDQAGAEAQVGLTSAEQS 70 80 90 100 110 120 130 140 150 160 170 180 FLJ003 GAGRGGRTPASPRDLARVCRSEAVERLSVLRTKAMRQKEDHRGLRNYNYTLLRVPLPDGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 GAGRGGRTPASPRDLARVCRSEAVERLSVLRTKAMRQKEDHRGLRNYNYTLLRVPLPDGC 130 140 150 160 170 180 190 200 210 220 230 FLJ003 LLQGGHQRWPWRAARVGRGPWAPPALTPPLPRHFLRSGAAGGGVRVRPGGPPERLAAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 LLQGGHQRWPWRAARVGRGPWAPPALTPPLPRHFLRSGAAGGGVRVRPGGPPERLAAF 190 200 210 220 230 >>gi|114674732|ref|XP_512287.2| PREDICTED: similar to UB (283 aa) initn: 643 init1: 399 opt: 399 Z-score: 452.9 bits: 91.4 E(): 1.6e-16 Smith-Waterman score: 591; 70.748% identity (75.510% similar) in 147 aa overlap (38-184:76-193) 10 20 30 40 50 60 FLJ003 REWGRGASGQEGPAWGSLHCTVTPMSCHAVEDPEEFYVLSETTLAQPQSLERHKEQLLAG :::::::::::::::::::::::::::::. gi|114 FQERINCLEGTHEFFEAIGFQKVLLPVQDQEDPEEFYVLSETTLAQPQSLERHKEQLLAA 50 60 70 80 90 100 70 80 90 100 110 120 FLJ003 EPVRAKLDRQRRVFQPSPLASQFELPGDFFNPHSRGDQAGAEAQVGLTSAEQSGAGRGGR ::::::::::::::::::::::::::::::: ::. : . : gi|114 EPVRAKLDRQRRVFQPSPLASQFELPGDFFN---------------LTAEEIKREQR--- 110 120 130 140 130 140 150 160 170 180 FLJ003 TPASPRDLARVCRSEAVERLSVLRTKAMRQKEDHRGLRNYNYTLLRVPLPDGCLLQGGHQ :::::::::::::::::.::..::::.:::::::: ::::::::: gi|114 -----------LRSEAVERLSVLRTKAMREKEEQRGLRKYNYTLLRVRLPDGCLLQGTFY 150 160 170 180 190 190 200 210 220 230 FLJ003 RWPWRAARVGRGPWAPPALTPPLPRHFLRSGAAGGGVRVRPGGPPERLAAF gi|114 ARERLGAVYGFVREALQSDWLPFELLASGGQKLSEDENLALNECGLVPSALLTFSWDMAV 200 210 220 230 240 250 >>gi|33873602|gb|AAH07414.2| UBXN6 protein [Homo sapiens (293 aa) initn: 643 init1: 399 opt: 399 Z-score: 452.7 bits: 91.4 E(): 1.6e-16 Smith-Waterman score: 591; 70.748% identity (75.510% similar) in 147 aa overlap (38-184:86-203) 10 20 30 40 50 60 FLJ003 REWGRGASGQEGPAWGSLHCTVTPMSCHAVEDPEEFYVLSETTLAQPQSLERHKEQLLAG :::::::::::::::::::::::::::::. gi|338 FQERINCLEGTHEFFEAIGFQKVLLPAQDQEDPEEFYVLSETTLAQPQSLERHKEQLLAA 60 70 80 90 100 110 70 80 90 100 110 120 FLJ003 EPVRAKLDRQRRVFQPSPLASQFELPGDFFNPHSRGDQAGAEAQVGLTSAEQSGAGRGGR ::::::::::::::::::::::::::::::: ::. : . : gi|338 EPVRAKLDRQRRVFQPSPLASQFELPGDFFN---------------LTAEEIKREQR--- 120 130 140 150 130 140 150 160 170 180 FLJ003 TPASPRDLARVCRSEAVERLSVLRTKAMRQKEDHRGLRNYNYTLLRVPLPDGCLLQGGHQ :::::::::::::::::.::..::::.:::::::: ::::::::: gi|338 -----------LRSEAVERLSVLRTKAMREKEEQRGLRKYNYTLLRVRLPDGCLLQGTFY 160 170 180 190 200 190 200 210 220 230 FLJ003 RWPWRAARVGRGPWAPPALTPPLPRHFLRSGAAGGGVRVRPGGPPERLAAF gi|338 ARERLGAVYGFVREALQSDWLPFELLASGGQKLSEDENLALNECGLVPSALLTFSWDMAV 210 220 230 240 250 260 >>gi|114674730|ref|XP_001138590.1| PREDICTED: UBX domain (345 aa) initn: 643 init1: 399 opt: 399 Z-score: 451.7 bits: 91.5 E(): 1.8e-16 Smith-Waterman score: 591; 70.748% identity (75.510% similar) in 147 aa overlap (38-184:138-255) 10 20 30 40 50 60 FLJ003 REWGRGASGQEGPAWGSLHCTVTPMSCHAVEDPEEFYVLSETTLAQPQSLERHKEQLLAG :::::::::::::::::::::::::::::. gi|114 FQERINCLEGTHEFFEAIGFQKVLLPVQDQEDPEEFYVLSETTLAQPQSLERHKEQLLAA 110 120 130 140 150 160 70 80 90 100 110 120 FLJ003 EPVRAKLDRQRRVFQPSPLASQFELPGDFFNPHSRGDQAGAEAQVGLTSAEQSGAGRGGR ::::::::::::::::::::::::::::::: ::. : . : gi|114 EPVRAKLDRQRRVFQPSPLASQFELPGDFFN---------------LTAEEIKREQR--- 170 180 190 200 130 140 150 160 170 180 FLJ003 TPASPRDLARVCRSEAVERLSVLRTKAMRQKEDHRGLRNYNYTLLRVPLPDGCLLQGGHQ :::::::::::::::::.::..::::.:::::::: ::::::::: gi|114 -----------LRSEAVERLSVLRTKAMREKEEQRGLRKYNYTLLRVRLPDGCLLQGTFY 210 220 230 240 250 190 200 210 220 230 FLJ003 RWPWRAARVGRGPWAPPALTPPLPRHFLRSGAAGGGVRVRPGGPPERLAAF gi|114 ARERLGAVYGFVREALQSDWLPFELLASGGQKLSEDENLALNECGLVPSALLTFSWDMAV 260 270 280 290 300 310 >>gi|13160494|gb|AAK13258.1|AF272894_1 UBX domain-contai (388 aa) initn: 643 init1: 399 opt: 399 Z-score: 451.1 bits: 91.5 E(): 2e-16 Smith-Waterman score: 591; 70.748% identity (75.510% similar) in 147 aa overlap (38-184:181-298) 10 20 30 40 50 60 FLJ003 REWGRGASGQEGPAWGSLHCTVTPMSCHAVEDPEEFYVLSETTLAQPQSLERHKEQLLAG :::::::::::::::::::::::::::::. gi|131 FQERINCLEGTHEFFEAIGFQKVLLPAQDQEDPEEFYVLSETTLAQPQSLERHKEQLLAA 160 170 180 190 200 210 70 80 90 100 110 120 FLJ003 EPVRAKLDRQRRVFQPSPLASQFELPGDFFNPHSRGDQAGAEAQVGLTSAEQSGAGRGGR ::::::::::::::::::::::::::::::: ::. : . : gi|131 EPVRAKLDRQRRVFQPSPLASQFELPGDFFN---------------LTAEEIKREQR--- 220 230 240 250 130 140 150 160 170 180 FLJ003 TPASPRDLARVCRSEAVERLSVLRTKAMRQKEDHRGLRNYNYTLLRVPLPDGCLLQGGHQ :::::::::::::::::.::..::::.:::::::: ::::::::: gi|131 -----------LRSEAVERLSVLRTKAMREKEEQRGLRKYNYTLLRVRLPDGCLLQGTFY 260 270 280 290 300 190 200 210 220 230 FLJ003 RWPWRAARVGRGPWAPPALTPPLPRHFLRSGAAGGGVRVRPGGPPERLAAF gi|131 ARERLGAVYGFVREALQSDWLPFELLASGGQKLSEDENLALNECGLVPSALLTFSWDMAV 310 320 330 340 350 360 >>gi|90085559|dbj|BAE91520.1| unnamed protein product [M (388 aa) initn: 632 init1: 399 opt: 399 Z-score: 451.1 bits: 91.5 E(): 2e-16 Smith-Waterman score: 580; 69.388% identity (75.510% similar) in 147 aa overlap (38-184:181-298) 10 20 30 40 50 60 FLJ003 REWGRGASGQEGPAWGSLHCTVTPMSCHAVEDPEEFYVLSETTLAQPQSLERHKEQLLAG :::::::::::::::::::::::::::::. gi|900 FQERINCLEGTHEFFEAIGFQKVLLPIQDQEDPEEFYVLSETTLAQPQSLERHKEQLLAA 160 170 180 190 200 210 70 80 90 100 110 120 FLJ003 EPVRAKLDRQRRVFQPSPLASQFELPGDFFNPHSRGDQAGAEAQVGLTSAEQSGAGRGGR ::::::::::::::::::::::::::::::: ::. : . : gi|900 EPVRAKLDRQRRVFQPSPLASQFELPGDFFN---------------LTAEEIKREQR--- 220 230 240 250 130 140 150 160 170 180 FLJ003 TPASPRDLARVCRSEAVERLSVLRTKAMRQKEDHRGLRNYNYTLLRVPLPDGCLLQGGHQ ::.::::::::::::::.::..::::.:.:::::: ::::::::: gi|900 -----------LRSDAVERLSVLRTKAMREKEEQRGLRKYTYTLLRVRLPDGCLLQGTFY 260 270 280 290 300 190 200 210 220 230 FLJ003 RWPWRAARVGRGPWAPPALTPPLPRHFLRSGAAGGGVRVRPGGPPERLAAF gi|900 ARERLGAVYGFVREALHSDWLPFELLASGGQKLSEDENLALNECGLVPSALLTFSWDMAV 310 320 330 340 350 360 >>gi|109122978|ref|XP_001102049.1| PREDICTED: similar to (388 aa) initn: 632 init1: 399 opt: 399 Z-score: 451.1 bits: 91.5 E(): 2e-16 Smith-Waterman score: 580; 69.388% identity (75.510% similar) in 147 aa overlap (38-184:181-298) 10 20 30 40 50 60 FLJ003 REWGRGASGQEGPAWGSLHCTVTPMSCHAVEDPEEFYVLSETTLAQPQSLERHKEQLLAG :::::::::::::::::::::::::::::. gi|109 FQERINCLEGTHEFFEAIGFQKVLLPIQDQEDPEEFYVLSETTLAQPQSLERHKEQLLAA 160 170 180 190 200 210 70 80 90 100 110 120 FLJ003 EPVRAKLDRQRRVFQPSPLASQFELPGDFFNPHSRGDQAGAEAQVGLTSAEQSGAGRGGR ::::::::::::::::::::::::::::::: ::. : . : gi|109 EPVRAKLDRQRRVFQPSPLASQFELPGDFFN---------------LTAEEIKREQR--- 220 230 240 250 130 140 150 160 170 180 FLJ003 TPASPRDLARVCRSEAVERLSVLRTKAMRQKEDHRGLRNYNYTLLRVPLPDGCLLQGGHQ ::.::::::::::::::.::..::::.:.:::::: ::::::::: gi|109 -----------LRSDAVERLSVLRTKAMREKEEQRGLRKYTYTLLRVRLPDGCLLQGTFY 260 270 280 290 300 190 200 210 220 230 FLJ003 RWPWRAARVGRGPWAPPALTPPLPRHFLRSGAAGGGVRVRPGGPPERLAAF gi|109 ARERLGAVYGFVREALQSDWLPFELLASGGQKLSEDENLALNECGLVPSALLTFSWDMAV 310 320 330 340 350 360 >>gi|114674728|ref|XP_001138764.1| PREDICTED: UBX domain (388 aa) initn: 643 init1: 399 opt: 399 Z-score: 451.1 bits: 91.5 E(): 2e-16 Smith-Waterman score: 591; 70.748% identity (75.510% similar) in 147 aa overlap (38-184:181-298) 10 20 30 40 50 60 FLJ003 REWGRGASGQEGPAWGSLHCTVTPMSCHAVEDPEEFYVLSETTLAQPQSLERHKEQLLAG :::::::::::::::::::::::::::::. gi|114 FQERINCLEGTHEFFEAIGFQKVLLPVQDQEDPEEFYVLSETTLAQPQSLERHKEQLLAA 160 170 180 190 200 210 70 80 90 100 110 120 FLJ003 EPVRAKLDRQRRVFQPSPLASQFELPGDFFNPHSRGDQAGAEAQVGLTSAEQSGAGRGGR ::::::::::::::::::::::::::::::: ::. : . : gi|114 EPVRAKLDRQRRVFQPSPLASQFELPGDFFN---------------LTAEEIKREQR--- 220 230 240 250 130 140 150 160 170 180 FLJ003 TPASPRDLARVCRSEAVERLSVLRTKAMRQKEDHRGLRNYNYTLLRVPLPDGCLLQGGHQ :::::::::::::::::.::..::::.:::::::: ::::::::: gi|114 -----------LRSEAVERLSVLRTKAMREKEEQRGLRKYNYTLLRVRLPDGCLLQGTFY 260 270 280 290 300 190 200 210 220 230 FLJ003 RWPWRAARVGRGPWAPPALTPPLPRHFLRSGAAGGGVRVRPGGPPERLAAF gi|114 ARERLGAVYGFVREALQSDWLPFELLASGGQKLSEDENLALNECGLVPSALLTFSWDMAV 310 320 330 340 350 360 >>gi|114674726|ref|XP_001138677.1| PREDICTED: UBX domain (417 aa) initn: 643 init1: 399 opt: 399 Z-score: 450.7 bits: 91.6 E(): 2.1e-16 Smith-Waterman score: 591; 70.748% identity (75.510% similar) in 147 aa overlap (38-184:210-327) 10 20 30 40 50 60 FLJ003 REWGRGASGQEGPAWGSLHCTVTPMSCHAVEDPEEFYVLSETTLAQPQSLERHKEQLLAG :::::::::::::::::::::::::::::. gi|114 FQERINCLEGTHEFFEAIGFQKVLLPVQDQEDPEEFYVLSETTLAQPQSLERHKEQLLAA 180 190 200 210 220 230 70 80 90 100 110 120 FLJ003 EPVRAKLDRQRRVFQPSPLASQFELPGDFFNPHSRGDQAGAEAQVGLTSAEQSGAGRGGR ::::::::::::::::::::::::::::::: ::. : . : gi|114 EPVRAKLDRQRRVFQPSPLASQFELPGDFFN---------------LTAEEIKREQR--- 240 250 260 270 280 130 140 150 160 170 180 FLJ003 TPASPRDLARVCRSEAVERLSVLRTKAMRQKEDHRGLRNYNYTLLRVPLPDGCLLQGGHQ :::::::::::::::::.::..::::.:::::::: ::::::::: gi|114 -----------LRSEAVERLSVLRTKAMREKEEQRGLRKYNYTLLRVRLPDGCLLQGTFY 290 300 310 320 330 190 200 210 220 230 FLJ003 RWPWRAARVGRGPWAPPALTPPLPRHFLRSGAAGGGVRVRPGGPPERLAAF gi|114 ARERLGAVYGFVREALQSDWLPFELLASGGQKLSEDENLALNECGLVPSALLTFSWDMAV 340 350 360 370 380 390 >>gi|109122976|ref|XP_001102137.1| PREDICTED: similar to (441 aa) initn: 632 init1: 399 opt: 399 Z-score: 450.3 bits: 91.6 E(): 2.2e-16 Smith-Waterman score: 580; 69.388% identity (75.510% similar) in 147 aa overlap (38-184:234-351) 10 20 30 40 50 60 FLJ003 REWGRGASGQEGPAWGSLHCTVTPMSCHAVEDPEEFYVLSETTLAQPQSLERHKEQLLAG :::::::::::::::::::::::::::::. gi|109 FQERINCLEGTHEFFEAIGFQKVLLPIQDQEDPEEFYVLSETTLAQPQSLERHKEQLLAA 210 220 230 240 250 260 70 80 90 100 110 120 FLJ003 EPVRAKLDRQRRVFQPSPLASQFELPGDFFNPHSRGDQAGAEAQVGLTSAEQSGAGRGGR ::::::::::::::::::::::::::::::: ::. : . : gi|109 EPVRAKLDRQRRVFQPSPLASQFELPGDFFN---------------LTAEEIKREQR--- 270 280 290 300 130 140 150 160 170 180 FLJ003 TPASPRDLARVCRSEAVERLSVLRTKAMRQKEDHRGLRNYNYTLLRVPLPDGCLLQGGHQ ::.::::::::::::::.::..::::.:.:::::: ::::::::: gi|109 -----------LRSDAVERLSVLRTKAMREKEEQRGLRKYTYTLLRVRLPDGCLLQGTFY 310 320 330 340 350 190 200 210 220 230 FLJ003 RWPWRAARVGRGPWAPPALTPPLPRHFLRSGAAGGGVRVRPGGPPERLAAF gi|109 ARERLGAVYGFVREALQSDWLPFELLASGGQKLSEDENLALNECGLVPSALLTFSWDMAV 360 370 380 390 400 410 238 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Sat Feb 28 00:50:34 2009 done: Sat Feb 28 00:55:35 2009 Total Scan time: 710.900 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]