# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj05987.fasta.huge -Q ../query/FLJ00394.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00394, 238 aa vs ./tmplib.10216 library 2210756 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.5275+/-0.00452; mu= 17.8124+/- 0.306 mean_var=118.8441+/-25.378, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.117648 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0616 ( 634 res) hg03623 ( 634) 114 29.4 0.52 KIAA0705 ( 1483 res) hg03359s1 (1483) 108 29.0 1.7 FLJ00268 ( 695 res) sj05723 ( 695) 103 27.6 2 KIAA1822 ( 533 res) fh13781 ( 533) 96 26.2 4 KIAA0176 ( 265 res) ha03941 ( 265) 92 25.1 4.4 FLJ00079 ( 84 res) as00079 ( 84) 84 22.9 6.1 FLJ00096 ( 208 res) as00096 ( 208) 88 24.2 6.1 FLJ00093 ( 977 res) as00093 ( 977) 94 26.3 6.9 FLJ00381 ( 343 res) sj01456 ( 343) 89 24.7 7.1 FLJ00020 ( 1142 res) as00020 (1142) 94 26.4 7.5 KIAA1608 ( 872 res) fj20142 ( 872) 92 25.9 8.2 FLJ00224 ( 896 res) sj06244 ( 896) 92 25.9 8.4 FLJ00281 ( 1495 res) sh01915 (1495) 94 26.6 8.7 KIAA1277 ( 1039 res) fj11251 (1039) 91 25.8 10 KIAA1172 ( 929 res) hj03919(revised) ( 929) 89 25.4 12 KIAA1644 ( 132 res) fg07060 ( 132) 80 22.6 12 FLJ00099 ( 217 res) as00099 ( 217) 82 23.2 13 FLJ00358 ( 217 res) sh03894 ( 217) 82 23.2 13 FLJ00008 ( 217 res) as00008 ( 217) 82 23.2 13 KIAA1462 ( 1363 res) ef00562 (1363) 90 25.8 13 KIAA0584 ( 738 res) hj00933 ( 738) 87 24.9 14 KIAA0709 ( 1484 res) ah06501 (1484) 90 25.9 14 KIAA0434 ( 1571 res) hh02165 (1571) 90 25.9 14 KIAA0724 ( 1047 res) hk02773 (1047) 88 25.3 15 KIAA0989 ( 859 res) hk05377 ( 859) 86 24.9 17 KIAA1856 ( 1134 res) fh03203 (1134) 87 25.2 17 KIAA1394 ( 1003 res) hj07546 (1003) 86 25.0 18 KIAA1957 ( 481 res) fk12643 ( 481) 82 23.8 19 KIAA1862 ( 1070 res) aj00563 (1070) 85 24.8 21 FLJ00070 ( 1382 res) as00070 (1382) 86 25.2 21 KIAA2001 ( 689 res) bj00176 ( 689) 82 24.0 24 KIAA1423 ( 616 res) fh08369(revised) ( 616) 81 23.8 25 KIAA1431 ( 891 res) fj00022 ( 891) 82 24.2 27 KIAA0755 ( 1093 res) hk04532 (1093) 82 24.3 30 KIAA1428 ( 709 res) fh02979s1 ( 709) 80 23.7 30 FLJ00018 ( 1430 res) as00018 (1430) 83 24.7 31 KIAA0145 ( 1198 res) hg01767 (1198) 82 24.4 31 KIAA1495 ( 502 res) fj08986 ( 502) 78 23.1 32 KIAA1690 ( 482 res) fh27434 ( 482) 77 22.9 35 KIAA1739 ( 963 res) pj00464 ( 963) 80 23.9 35 KIAA1187 ( 813 res) fk03027 ( 813) 79 23.6 36 KIAA0487 ( 234 res) fk08362 ( 234) 73 21.8 38 KIAA1234 ( 727 res) fh08618 ( 727) 78 23.4 38 KIAA0208 ( 748 res) ha02713 ( 748) 78 23.4 39 KIAA1886 ( 655 res) fk01837 ( 655) 77 23.1 41 KIAA0711 ( 661 res) hg00358 ( 661) 77 23.2 41 KIAA1949 ( 662 res) fj02913 ( 662) 77 23.2 41 FLJ00028 ( 91 res) as00028 ( 91) 68 20.3 41 KIAA0954 ( 1183 res) hj05543s1 (1183) 79 23.9 44 KIAA1809 ( 800 res) fk01629 ( 800) 77 23.3 45 >>KIAA0616 ( 634 res) hg03623 (634 aa) initn: 116 init1: 59 opt: 114 Z-score: 111.4 bits: 29.4 E(): 0.52 Smith-Waterman score: 114; 29.747% identity (47.468% similar) in 158 aa overlap (83-231:255-397) 60 70 80 90 100 110 FLJ003 QPQSLERHKEQLLAGEPVRAKLDRQRRVFQPSPLASQFELPGDFFNPHSRGDQAGAEAQV :::: . .. : : ....: : . KIAA06 PSADQENTTALIPATHNTGGSLPDLTNIHFPSPLPTPLDPEEPTFPALSSSSSTGNLA-A 230 240 250 260 270 280 120 130 140 150 160 FLJ003 GLTSAEQSGAGRGGRTP-ASPRDLARVCRSEAVERLSVLRTKAMRQKEDHR--GLRNYNY .:: .:::.: :: .::. : .: :: : :.: ::. . : . KIAA06 NLTHLGIGGAGQGMSTPGSSPQH-----RPAGVSPLS-LSTEARRQQASPTLSPLSPITQ 290 300 310 320 330 170 180 190 200 210 220 FLJ003 TL------LRVPLPDGCLLQGGHQRWPWRAARVGRGPWAPPALTPPLPRHFLRSGAAGGG .. :. :: . . :.: :. : . : ::: : : . KIAA06 AVAMDALSLEQQLPYAFFTQAGSQQPP---PQPQPPPPPPPASQQPPP-----PPPPQAP 340 350 360 370 380 230 FLJ003 VRVRPGGPPERLAAF ::. :::: KIAA06 VRLPPGGPLLPSASLTRGPQPPPLAVTVPSSLPQSPPENPGQPSMGIDIASAPALQQYRT 390 400 410 420 430 440 >>KIAA0705 ( 1483 res) hg03359s1 (1483 aa) initn: 83 init1: 57 opt: 108 Z-score: 102.4 bits: 29.0 E(): 1.7 Smith-Waterman score: 108; 27.313% identity (47.137% similar) in 227 aa overlap (10-220:1269-1479) 10 20 30 FLJ003 VDRAWLSREWGRGASGQEG-PAWG-SLHCTVTPMS-CHA :. :.. : : : :: ..:.: : KIAA07 IELIKSGGRRVRLLLKRGTGQVPEYDEPAPWSSPAAAAPGLPEVGVSLDDGLAPFSPSHP 1240 1250 1260 1270 1280 1290 40 50 60 70 80 90 FLJ003 VE--DPEEFYVLSET-TLAQPQSLERHKEQLLAGEPVRAKLDRQR-RVFQPSPLASQF-- . :: . . : . . ..... :: :. . .: .:: : .:. : KIAA07 APPSDPSHQISPGPTWDIKREHDVRKPKELSACGQK-KQRLGEQRERSASPQRAARPRLE 1300 1310 1320 1330 1340 1350 100 110 120 130 140 FLJ003 ELPGDFFNPHSRGDQAGAEAQVGLTSAEQSGAGRGGRTPASPRDLA--RVCRSEAVERLS : :: :.. : :. ::..:. . :.:.: : :: : ..:: :. KIAA07 EAPGGQGRPEA-GRPASEARAPGLAAADAADAARAGGKEA-PRAAAGSELCRREGPGAAP 1360 1370 1380 1390 1400 1410 150 160 170 180 190 200 FLJ003 VLRT-----KAMRQKEDHRGLRNYNYTLLRVPLPDGCLLQGGHQRWPWRAARVGRGPWAP .. .. . : . : : : : : :: : : : :. ::: KIAA07 AFAGPGGGGSGALEAEGRAGARAG-------PRP-GPRPPGGA---PARKAAVAPGPWKV 1420 1430 1440 1450 1460 210 220 230 FLJ003 PALTPPLPRHFLRSGAAGGGVRVRPGGPPERLAAF :. . :: :. ::. KIAA07 PG-SDKLPS-VLKPGASAASR 1470 1480 >>FLJ00268 ( 695 res) sj05723 (695 aa) initn: 115 init1: 66 opt: 103 Z-score: 101.0 bits: 27.6 E(): 2 Smith-Waterman score: 108; 27.826% identity (46.957% similar) in 230 aa overlap (16-227:460-683) 10 20 30 FLJ003 VDRAWLSREWGRGASGQEGPAWGSLHCTVT------PMSCHAVED :.:. : : : :. .. .. . FLJ002 VCAVAVPVGGLGAARLEAQGGRRRLLLRVGGSEAARWDLLLCWVAGRVLQWDLGRRVQQC 430 440 450 460 470 480 40 50 60 70 80 90 FLJ003 PEEFYVLSETTLAQPQSLERHKEQLLAGEPVRAKLDRQRRVFQPSPLASQFELPGDFFNP :: .. . : .. :: : : .: :.:: : . : : .: . : FLJ002 PEGPLLVHHLQAAGVWGVGLAGEQALPLCGHRDRLGGQHRVPQAAQLHS-VAMPFPPMAP 490 500 510 520 530 540 100 110 120 130 140 150 FLJ003 HS-RGDQAGAEAQVGLTSAEQSGAGRGGRTPASPRDLARVCRS-EAVERLSVLRTKAM-- : ..:: . .. .. .: . . : : : :. .: : .::... FLJ002 ALLRPSRAGLDYLCRIVRGQATGCWGAPQLLLLAR-LPRGGRTARARGRGPLLRARGALA 550 560 570 580 590 600 160 170 180 190 200 FLJ003 RQKEDHRGLR--NYNYTLLRVP---LPDGCLLQGGHQRWPWRAARV-GRGPWAPPALTPP : :: : . . ::: : .: ::.. ::: ::: ::: .: : FLJ002 RGLLGHRVRRWLGPGGRGGRVPPAGLWSGRRRPGGRRLWPWLRARVAGRGG-VPGQRGVP 610 620 630 640 650 660 210 220 230 FLJ003 --LPRHFLRSGAAGGGVRVRPGGPPERLAAF :: ::::. . .:.: FLJ002 VGLP---LRSGGDAETARTRRTRACAAGKTNS 670 680 690 >>KIAA1822 ( 533 res) fh13781 (533 aa) initn: 107 init1: 85 opt: 96 Z-score: 95.6 bits: 26.2 E(): 4 Smith-Waterman score: 96; 47.500% identity (52.500% similar) in 40 aa overlap (188-227:370-409) 160 170 180 190 200 210 FLJ003 KEDHRGLRNYNYTLLRVPLPDGCLLQGGHQRWPWRAARVGRGPWAPPALTPPLPRHFLRS : : :: : :: :::: :: : . KIAA18 AQVKIRSRLIPFVPKEKFIPKTRSTPRPTARAPTRAPRRGRPTAAPPAPTPRPARPTQQP 340 350 360 370 380 390 220 230 FLJ003 GAAGGGVRVRPGGPPERLAAF :. :: : : KIAA18 GSRRGGGRRRGRLNSASRAFRDGEVRLVRPAGLSSGSGRVEVFVGGRWGTVCDDSWNISG 400 410 420 430 440 450 >>KIAA0176 ( 265 res) ha03941 (265 aa) initn: 111 init1: 56 opt: 92 Z-score: 94.9 bits: 25.1 E(): 4.4 Smith-Waterman score: 92; 47.619% identity (61.905% similar) in 42 aa overlap (197-234:26-66) 170 180 190 200 210 220 FLJ003 YNYTLLRVPLPDGCLLQGGHQRWPWRAARVGRGPW-APPALTP--PLPRHFLRSGAAGGG : :: .::. : : :: : .:: . KIAA01 SKMAELQLDPAMAGLGGGGGSGVGDGGGPVRGPPSPRPAGPTPRGHGRPAAAVAQ 10 20 30 40 50 230 FLJ003 VRVRPG-GPPERLAAF :..:: ::::: KIAA01 -RLEPGPGPPERAGGGGAARWVRLNVGGTYFVTTRQTLGREPKSFLCRLCCQEDPELDSD 60 70 80 90 100 110 >>FLJ00079 ( 84 res) as00079 (84 aa) initn: 81 init1: 48 opt: 84 Z-score: 92.3 bits: 22.9 E(): 6.1 Smith-Waterman score: 84; 28.571% identity (57.143% similar) in 63 aa overlap (169-221:7-68) 140 150 160 170 180 190 FLJ003 CRSEAVERLSVLRTKAMRQKEDHRGLRNYNYTLLRVPL-PDGCLLQGGHQRWPWRAARVG . ::.. . : : . :: .: :.. .: FLJ000 LVPLCFFPLLQMAVGPPDCPV-GGPLTFPGRGSGAG 10 20 30 200 210 220 230 FLJ003 RG----PWAPPALTPP-----LPRHFLRSGAAGGGVRVRPGGPPERLAAF : : :: . :: .::... ....: FLJ000 VGTTLTPLPPPKMPPPTILSTVPRQMFSDAGSGDDALDGDDDLVIDIPE 40 50 60 70 80 >>FLJ00096 ( 208 res) as00096 (208 aa) initn: 214 init1: 48 opt: 88 Z-score: 92.2 bits: 24.2 E(): 6.1 Smith-Waterman score: 88; 26.400% identity (50.400% similar) in 125 aa overlap (112-234:37-149) 90 100 110 120 130 140 FLJ003 QPSPLASQFELPGDFFNPHSRGDQAGAEAQVGLTSAEQSGAGRGGRTPASPRDLARVCRS .:::..: ::: : . :. FLJ000 PPPRSREKESPRVAARVVVPVRSRERVLTSMGLTGVE----GRGCRYSG--------CKM 10 20 30 40 50 150 160 170 180 190 200 FLJ003 EAVERLSVLRTKAMRQKEDHRGLRNYNYTLLRVPLPDGCLLQGGHQRWPWRA-ARVGRGP :. .:.. : :. .:: .. . . :: : : . .: : ...: .: FLJ000 WPVRAVSIFSTLIGRRLAWRRGSEGGTACTKGLVLPAGDEPGPGPELFPESALVQAGSAP 60 70 80 90 100 110 210 220 230 FLJ003 WAPPALTPP-LPRHFLRSGAAGGGVRVRPGGPPERLAAF :: :: : .::. . :. . ..: . .: FLJ000 PPPPPPPPPPLCLLLLRAESEGAVLMTHPRAWEQRGGGLREARGGLGAARSPREQEQREE 120 130 140 150 160 170 FLJ000 EELARRPRAPSAPSRRLEPDASNPGWPAAEPWPG 180 190 200 >>FLJ00093 ( 977 res) as00093 (977 aa) initn: 117 init1: 71 opt: 94 Z-score: 91.3 bits: 26.3 E(): 6.9 Smith-Waterman score: 120; 24.891% identity (46.725% similar) in 229 aa overlap (31-232:592-802) 10 20 30 40 50 60 FLJ003 VDRAWLSREWGRGASGQEGPAWGSLHCTVTPMSCHAVEDPEEFYVLSETTLAQPQSLERH :. : .: : . : .. :.. . FLJ000 SEFEGHKRISEQPLPNKTISPPPAPAPAAAPLPCGPTETIPSFLL---TRAGRDQAICEL 570 580 590 600 610 70 80 90 100 110 FLJ003 KEQLLAGEPVRAKL-DRQRRVFQPSPL--ASQFELPGDFFNPHSRGDQAGAEA----QVG .:.. .: .: : .. .: :: :: :. :. ..:: : . : . : FLJ000 QEEV---SRLRLRLEDSLHQPLQGSPTRPASAFDRPA-----RTRGRPADSPATWGSHYG 620 630 640 650 660 670 120 130 140 150 FLJ003 LTSAEQ-SGAGRG-----------GRTPASPRDLARVCRSEAVE--RLSVLRTKAMRQKE :.:. : :: .:. . ::.. :. : : : .. :. :. FLJ000 SKSTERLPGEPRGEEQIVPPGRQRARSSSVPREVLRLSLSSESELPSLPLFSEKSKTTKD 680 690 700 710 720 730 160 170 180 190 200 210 FLJ003 DHRGLRNYNYTLLRVPLPDGCLLQG---GHQRW---PWRAARVGRGPWAPPALTPPLPRH . .. :. . . . :: ..: ::. : .:. : : . : : FLJ000 SPQAARDGKRGVGSAGWPDRVTFRGQYTGHEYHVLSP-KAVPKGNGTVSCPHCRP----- 740 750 760 770 780 220 230 FLJ003 FLRSGAAGGGVRVRPGGPPERLAAF .:. :::.: : ::: FLJ000 -IRTQDAGGAVTGDPLGPPPADTLQCPLCGQVGSPPEADGPGSATSGAEKATTRRKAPST 790 800 810 820 830 840 >>FLJ00381 ( 343 res) sj01456 (343 aa) initn: 82 init1: 60 opt: 89 Z-score: 91.1 bits: 24.7 E(): 7.1 Smith-Waterman score: 121; 24.242% identity (49.784% similar) in 231 aa overlap (12-234:11-212) 10 20 30 40 50 FLJ003 VDRAWLSREWGRGASGQEGPA-WGSLHCTVTPMS-CHAVEDPEEFYVL---SETTLAQPQ : . :. .:. :.:. .. .. : : .: ::.. . ...:: FLJ003 VWGGSALRSSRETLGSSAPVTWASVIADMSIFGHCPAHDD---FYLVVCNHCSQVVKPQ 10 20 30 40 50 60 70 80 90 100 110 FLJ003 SLERHKEQLLAGEPVRAKLDRQRRVFQPSPLASQFELPGDFFNPHSRGDQAGAEAQVGLT ....: :. . :. .:: . :.: .:: . : . :. : : : FLJ003 AFQKHCERRHG--PL-SKLYGRAPPPPPAPASSQ--------KCHVVNGQGPACRAPGST 60 70 80 90 100 120 130 140 150 160 170 FLJ003 --SAEQSGAGRGGRTPASPRDLARVCRSEAVERLSVLRTKAMRQKEDHRGLRNYNYTLLR :....: : .: :. . : ... . ... : : .:.: FLJ003 KTSSREKGQGSRSRGHQPPEKTQKDNLCLFVPVVNLEKMSSL-PKPDGHGIR-------- 110 120 130 140 150 180 190 200 210 220 230 FLJ003 VPLPDGCLLQ-GGHQRWPWRAARVGRGPWAPPALTPPLPRHFLRSGAAGGGVRVRPGGPP : :.: : : :: . :. : :::. :: :. .. . :. . :.:: FLJ003 VAPPSGFLSQPGGLTK-----DSPGKPPMAPPSKEPP-GRENIEIIPSEGSSHWAEGSPP 160 170 180 190 200 210 FLJ003 ERLAAF :. FLJ003 EKEPSGTRLPPKTHRKMARKECDLNRQCGVINPETKKICTRLLTCKIHSVHQRREVQGRA 220 230 240 250 260 270 >>FLJ00020 ( 1142 res) as00020 (1142 aa) initn: 117 init1: 71 opt: 94 Z-score: 90.6 bits: 26.4 E(): 7.5 Smith-Waterman score: 122; 24.891% identity (47.162% similar) in 229 aa overlap (31-232:757-967) 10 20 30 40 50 60 FLJ003 VDRAWLSREWGRGASGQEGPAWGSLHCTVTPMSCHAVEDPEEFYVLSETTLAQPQSLERH :. : .: : . : .. :.. . FLJ000 SEFEGHKRISEQPLPNKTISPPPAPAPAAAPLPCGPTETIPSFLL---TRAGRDQAICEL 730 740 750 760 770 780 70 80 90 100 110 FLJ003 KEQLLAGEPVRAKL-DRQRRVFQPSPL--ASQFELPGDFFNPHSRGDQAGAEA----QVG .:.. .: .: : .. .: :: :: :. :. ..::. : . : . : FLJ000 QEEV---SRLRLRLEDSLHQPLQGSPTRPASAFDRPA-----RTRGQPADSPATWGSHYG 790 800 810 820 830 120 130 140 150 FLJ003 LTSAEQ-SGAGRG-----------GRTPASPRDLARVCRSEAVE--RLSVLRTKAMRQKE :.:. : :: .:. . ::.. :. : : : .. :. :. FLJ000 SKSTERLPGEPRGEEQIVPPGRQRARSSSVPREVLRLSLSSESELPSLPLFSEKSKTTKD 840 850 860 870 880 890 160 170 180 190 200 210 FLJ003 DHRGLRNYNYTLLRVPLPDGCLLQG---GHQRW---PWRAARVGRGPWAPPALTPPLPRH . .. :. . . . :: ..: ::. : .:. : : . : : FLJ000 SPQAARDGKRGVGSAGWPDRVTFRGQYTGHEYHVLSP-KAVPKGNGTVSCPHCRP----- 900 910 920 930 940 220 230 FLJ003 FLRSGAAGGGVRVRPGGPPERLAAF .:. :::.: : ::: FLJ000 -IRTQDAGGAVTGDPLGPPPADTLQCPLCGQVGSPPEADGPGSATSGAEKATTRRKAPST 950 960 970 980 990 1000 238 residues in 1 query sequences 2210756 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:02:42 2009 done: Fri Feb 27 11:02:42 2009 Total Scan time: 0.390 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]