# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sj05575.fasta.nr -Q ../query/FLJ00218.ptfa /cdna2/lib/nr/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
FLJ00218, 174 aa
vs /cdna2/lib/nr/nr library
2693465022 residues in 7827732 sequences
statistics sampled from 60000 to 7823779 sequences
Expectation_n fit: rho(ln(x))= 4.7410+/-0.000182; mu= 10.7845+/- 0.010
mean_var=69.0141+/-13.333, 0's: 39 Z-trim: 60 B-trim: 0 in 0/67
Lambda= 0.154385
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 36, opt: 24, open/ext: -10/-2, width: 16
The best scores are: opt bits E(7827732)
gi|18676638|dbj|BAB84971.1| FLJ00218 protein [Homo ( 174) 1228 281.4 4.7e-74
gi|119584603|gb|EAW64199.1| hCG27236, isoform CRA_ ( 392) 796 185.5 7.8e-45
gi|119584605|gb|EAW64201.1| hCG27236, isoform CRA_ ( 873) 796 185.8 1.4e-44
gi|119584602|gb|EAW64198.1| hCG27236, isoform CRA_ (1043) 796 185.9 1.6e-44
gi|48474948|sp|Q9C0E4.3|GRIP2_HUMAN RecName: Full= (1043) 796 185.9 1.6e-44
gi|122937249|ref|NP_001073892.1| glutamate recepto (1141) 796 185.9 1.7e-44
gi|109098018|ref|XP_001090379.1| PREDICTED: glutam (1196) 795 185.7 2.1e-44
gi|194221051|ref|XP_001914958.1| PREDICTED: glutam (1085) 781 182.5 1.7e-43
gi|73984538|ref|XP_858433.1| PREDICTED: similar to (1001) 773 180.7 5.4e-43
gi|73984540|ref|XP_541752.2| PREDICTED: similar to (1043) 773 180.7 5.6e-43
gi|148666892|gb|EDK99308.1| mCG130431, isoform CRA ( 747) 769 179.7 8.1e-43
gi|148666891|gb|EDK99307.1| mCG130431, isoform CRA (1042) 769 179.8 1e-42
gi|149255250|ref|XP_984210.2| PREDICTED: glutamate (1071) 759 177.6 4.9e-42
gi|149255676|ref|XP_001000130.2| PREDICTED: simila (1071) 758 177.4 5.8e-42
gi|149036757|gb|EDL91375.1| glutamate receptor int ( 533) 754 176.2 6.4e-42
gi|149036761|gb|EDL91379.1| glutamate receptor int ( 783) 754 176.4 8.5e-42
gi|149036758|gb|EDL91376.1| glutamate receptor int ( 824) 754 176.4 8.8e-42
gi|46397437|sp|Q9WTW1.1|GRIP2_RAT RecName: Full=Gl (1043) 754 176.5 1e-41
gi|119584601|gb|EAW64197.1| hCG27236, isoform CRA_ ( 169) 744 173.6 1.3e-41
gi|126336465|ref|XP_001376910.1| PREDICTED: simila (1193) 719 168.8 2.6e-39
gi|189042255|sp|A8E0R9.2|GRIP2_XENLA RecName: Full (1083) 700 164.5 4.5e-38
gi|157887779|emb|CAN52354.1| glutamate receptor in (1083) 700 164.5 4.5e-38
gi|124221910|dbj|BAF45467.1| glutamate receptor in (1083) 700 164.5 4.5e-38
gi|133711848|gb|ABO36653.1| glutamate receptor int (1083) 694 163.2 1.1e-37
gi|189535515|ref|XP_001922281.1| PREDICTED: simila (1122) 664 156.5 1.2e-35
gi|148725729|emb|CAN88506.1| novel glutamate recep ( 375) 654 153.8 2.5e-35
gi|47211334|emb|CAF94896.1| unnamed protein produc (1178) 625 147.8 5.1e-33
gi|47939783|gb|AAH72227.1| LOC432193 protein [Xeno ( 702) 605 143.2 7.7e-32
gi|148666893|gb|EDK99309.1| mCG130431, isoform CRA ( 679) 596 141.1 3e-31
gi|119617575|gb|EAW97169.1| hCG1774522, isoform CR (1069) 596 141.3 4.2e-31
gi|114643914|ref|XP_001161946.1| PREDICTED: glutam (1106) 594 140.9 5.8e-31
gi|55251092|emb|CAH69104.1| novel protein similar (1143) 594 140.9 6e-31
gi|148692448|gb|EDL24395.1| glutamate receptor int (1127) 592 140.4 8.1e-31
gi|114643912|ref|XP_001162024.1| PREDICTED: glutam (1009) 591 140.2 8.7e-31
gi|109097690|ref|XP_001117121.1| PREDICTED: glutam (1009) 591 140.2 8.7e-31
gi|45709824|gb|AAH67398.1| Grip1 protein [Mus musc (1060) 591 140.2 9e-31
gi|114643908|ref|XP_001162058.1| PREDICTED: glutam (1061) 591 140.2 9e-31
gi|109097686|ref|XP_001117116.1| PREDICTED: glutam (1061) 591 140.2 9e-31
gi|114643906|ref|XP_001161618.1| PREDICTED: glutam (1076) 591 140.2 9.1e-31
gi|92096237|gb|AAI15394.1| Glutamate receptor inte (1076) 591 140.2 9.1e-31
gi|78523088|gb|ABB46289.1| glutamate receptor inte (1112) 591 140.2 9.3e-31
gi|46397435|sp|P97879.1|GRIP1_RAT RecName: Full=Gl (1112) 591 140.2 9.3e-31
gi|149066844|gb|EDM16577.1| glutamate receptor int (1112) 591 140.2 9.3e-31
gi|114643904|ref|XP_001162097.1| PREDICTED: glutam (1113) 591 140.2 9.3e-31
gi|49116114|gb|AAH72632.1| Grip1 protein [Mus musc (1113) 591 140.2 9.3e-31
gi|46397459|sp|Q925T6.1|GRIP1_MOUSE RecName: Full= (1127) 591 140.2 9.4e-31
gi|149066843|gb|EDM16576.1| glutamate receptor int (1127) 591 140.2 9.4e-31
gi|114643902|ref|XP_509203.2| PREDICTED: glutamate (1128) 591 140.2 9.4e-31
gi|48474711|sp|Q9Y3R0.2|GRIP1_HUMAN RecName: Full= (1128) 591 140.2 9.4e-31
gi|109097684|ref|XP_001117109.1| PREDICTED: glutam (1128) 591 140.2 9.4e-31
>>gi|18676638|dbj|BAB84971.1| FLJ00218 protein [Homo sap (174 aa)
initn: 1228 init1: 1228 opt: 1228 Z-score: 1485.8 bits: 281.4 E(): 4.7e-74
Smith-Waterman score: 1228; 100.000% identity (100.000% similar) in 174 aa overlap (1-174:1-174)
10 20 30 40 50 60
FLJ002 QEWKRKWNSAFPSFSPADDGPYSKGGKDAGGADVSLACRRQSIPEEFRGITVVELIKKEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|186 QEWKRKWNSAFPSFSPADDGPYSKGGKDAGGADVSLACRRQSIPEEFRGITVVELIKKEG
10 20 30 40 50 60
70 80 90 100 110 120
FLJ002 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGIHLTRLRHDEIITLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|186 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGIHLTRLRHDEIITLL
70 80 90 100 110 120
130 140 150 160 170
FLJ002 KNVGERVVLEVEYELPPPGGCPWTGNFLHCLGCGWTRLPPHQGLGGRDHARWSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|186 KNVGERVVLEVEYELPPPGGCPWTGNFLHCLGCGWTRLPPHQGLGGRDHARWSG
130 140 150 160 170
>>gi|119584603|gb|EAW64199.1| hCG27236, isoform CRA_c [H (392 aa)
initn: 796 init1: 796 opt: 796 Z-score: 961.1 bits: 185.5 E(): 7.8e-45
Smith-Waterman score: 796; 100.000% identity (100.000% similar) in 122 aa overlap (17-138:13-134)
10 20 30 40 50 60
FLJ002 QEWKRKWNSAFPSFSPADDGPYSKGGKDAGGADVSLACRRQSIPEEFRGITVVELIKKEG
::::::::::::::::::::::::::::::::::::::::::::
gi|119 MLCGLSRETPGEADDGPYSKGGKDAGGADVSLACRRQSIPEEFRGITVVELIKKEG
10 20 30 40 50
70 80 90 100 110 120
FLJ002 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGIHLTRLRHDEIITLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGIHLTRLRHDEIITLL
60 70 80 90 100 110
130 140 150 160 170
FLJ002 KNVGERVVLEVEYELPPPGGCPWTGNFLHCLGCGWTRLPPHQGLGGRDHARWSG
::::::::::::::::::
gi|119 KNVGERVVLEVEYELPPPAPENNPRIISKTVDVSLYKEGNSFGFVLRGGAHEDGHKSRPL
120 130 140 150 160 170
>>gi|119584605|gb|EAW64201.1| hCG27236, isoform CRA_e [H (873 aa)
initn: 796 init1: 796 opt: 796 Z-score: 956.5 bits: 185.8 E(): 1.4e-44
Smith-Waterman score: 796; 100.000% identity (100.000% similar) in 122 aa overlap (17-138:13-134)
10 20 30 40 50 60
FLJ002 QEWKRKWNSAFPSFSPADDGPYSKGGKDAGGADVSLACRRQSIPEEFRGITVVELIKKEG
::::::::::::::::::::::::::::::::::::::::::::
gi|119 MLCGLSRETPGEADDGPYSKGGKDAGGADVSLACRRQSIPEEFRGITVVELIKKEG
10 20 30 40 50
70 80 90 100 110 120
FLJ002 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGIHLTRLRHDEIITLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGIHLTRLRHDEIITLL
60 70 80 90 100 110
130 140 150 160 170
FLJ002 KNVGERVVLEVEYELPPPGGCPWTGNFLHCLGCGWTRLPPHQGLGGRDHARWSG
::::::::::::::::::
gi|119 KNVGERVVLEVEYELPPPAPENNPRIISKTVDVSLYKEGNSFGFVLRGGAHEDGHKSRPL
120 130 140 150 160 170
>>gi|119584602|gb|EAW64198.1| hCG27236, isoform CRA_b [H (1043 aa)
initn: 796 init1: 796 opt: 796 Z-score: 955.5 bits: 185.9 E(): 1.6e-44
Smith-Waterman score: 796; 100.000% identity (100.000% similar) in 122 aa overlap (17-138:13-134)
10 20 30 40 50 60
FLJ002 QEWKRKWNSAFPSFSPADDGPYSKGGKDAGGADVSLACRRQSIPEEFRGITVVELIKKEG
::::::::::::::::::::::::::::::::::::::::::::
gi|119 MLCGLSRETPGEADDGPYSKGGKDAGGADVSLACRRQSIPEEFRGITVVELIKKEG
10 20 30 40 50
70 80 90 100 110 120
FLJ002 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGIHLTRLRHDEIITLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGIHLTRLRHDEIITLL
60 70 80 90 100 110
130 140 150 160 170
FLJ002 KNVGERVVLEVEYELPPPGGCPWTGNFLHCLGCGWTRLPPHQGLGGRDHARWSG
::::::::::::::::::
gi|119 KNVGERVVLEVEYELPPPAPENNPRIISKTVDVSLYKEGNSFGFVLRGGAHEDGHKSRPL
120 130 140 150 160 170
>>gi|48474948|sp|Q9C0E4.3|GRIP2_HUMAN RecName: Full=Glut (1043 aa)
initn: 796 init1: 796 opt: 796 Z-score: 955.5 bits: 185.9 E(): 1.6e-44
Smith-Waterman score: 796; 100.000% identity (100.000% similar) in 122 aa overlap (17-138:13-134)
10 20 30 40 50 60
FLJ002 QEWKRKWNSAFPSFSPADDGPYSKGGKDAGGADVSLACRRQSIPEEFRGITVVELIKKEG
::::::::::::::::::::::::::::::::::::::::::::
gi|484 MLCGLSRETPGEADDGPYSKGGKDAGGADVSLACRRQSIPEEFRGITVVELIKKEG
10 20 30 40 50
70 80 90 100 110 120
FLJ002 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGIHLTRLRHDEIITLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|484 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGIHLTRLRHDEIITLL
60 70 80 90 100 110
130 140 150 160 170
FLJ002 KNVGERVVLEVEYELPPPGGCPWTGNFLHCLGCGWTRLPPHQGLGGRDHARWSG
::::::::::::::::::
gi|484 KNVGERVVLEVEYELPPPAPENNPRIISKTVDVSLYKEGNSFGFVLRGGAHEDGHKSRPL
120 130 140 150 160 170
>>gi|122937249|ref|NP_001073892.1| glutamate receptor in (1141 aa)
initn: 796 init1: 796 opt: 796 Z-score: 955.0 bits: 185.9 E(): 1.7e-44
Smith-Waterman score: 796; 100.000% identity (100.000% similar) in 122 aa overlap (17-138:110-231)
10 20 30 40
FLJ002 QEWKRKWNSAFPSFSPADDGPYSKGGKDAGGADVSLACRRQSIPEE
::::::::::::::::::::::::::::::
gi|122 KQRGSRGSWWAAGETIANMLCGLSRETPGEADDGPYSKGGKDAGGADVSLACRRQSIPEE
80 90 100 110 120 130
50 60 70 80 90 100
FLJ002 FRGITVVELIKKEGSTLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|122 FRGITVVELIKKEGSTLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGI
140 150 160 170 180 190
110 120 130 140 150 160
FLJ002 HLTRLRHDEIITLLKNVGERVVLEVEYELPPPGGCPWTGNFLHCLGCGWTRLPPHQGLGG
::::::::::::::::::::::::::::::::
gi|122 HLTRLRHDEIITLLKNVGERVVLEVEYELPPPAPENNPRIISKTVDVSLYKEGNSFGFVL
200 210 220 230 240 250
170
FLJ002 RDHARWSG
gi|122 RGGAHEDGHKSRPLVLTYVRPGGPADREGSLKVGDRLLSVDGIPLHGASHATALATLRQC
260 270 280 290 300 310
>>gi|109098018|ref|XP_001090379.1| PREDICTED: glutamate (1196 aa)
initn: 795 init1: 795 opt: 795 Z-score: 953.5 bits: 185.7 E(): 2.1e-44
Smith-Waterman score: 795; 99.180% identity (100.000% similar) in 122 aa overlap (17-138:166-287)
10 20 30 40
FLJ002 QEWKRKWNSAFPSFSPADDGPYSKGGKDAGGADVSLACRRQSIPEE
::::::::::::::::::::::::::::::
gi|109 EQRGSRGSWWAAGETIANMLCGLSRETPGEADDGPYSKGGKDAGGADVSLACRRQSIPEE
140 150 160 170 180 190
50 60 70 80 90 100
FLJ002 FRGITVVELIKKEGSTLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGI
:::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
gi|109 FRGITVVELIKKEGSTLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNVGDYIRSVNGI
200 210 220 230 240 250
110 120 130 140 150 160
FLJ002 HLTRLRHDEIITLLKNVGERVVLEVEYELPPPGGCPWTGNFLHCLGCGWTRLPPHQGLGG
::::::::::::::::::::::::::::::::
gi|109 HLTRLRHDEIITLLKNVGERVVLEVEYELPPPAPENNPRIISKTVDVSLYKEGNSFGFVL
260 270 280 290 300 310
170
FLJ002 RDHARWSG
gi|109 RGGAHEDGHKSRPLVLTYVRPGGPADREGSLKVGDRLLSVDGIPLHGASHATALATLRQC
320 330 340 350 360 370
>>gi|194221051|ref|XP_001914958.1| PREDICTED: glutamate (1085 aa)
initn: 817 init1: 781 opt: 781 Z-score: 937.2 bits: 182.5 E(): 1.7e-43
Smith-Waterman score: 781; 95.902% identity (100.000% similar) in 122 aa overlap (17-138:104-225)
10 20 30 40
FLJ002 QEWKRKWNSAFPSFSPADDGPYSKGGKDAGGADVSLACRRQSIPEE
::::::::::::.:::::..::::::::::
gi|194 AKQRGSRGSQWAGETIADMLCGLSRETPGEADDGPYSKGGKDTGGADVAVACRRQSIPEE
80 90 100 110 120 130
50 60 70 80 90 100
FLJ002 FRGITVVELIKKEGSTLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGI
:::.:::::::::::::::::::::::::::::::::::::::::::::.::::::::::
gi|194 FRGVTVVELIKKEGSTLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNVGDYIRSVNGI
140 150 160 170 180 190
110 120 130 140 150 160
FLJ002 HLTRLRHDEIITLLKNVGERVVLEVEYELPPPGGCPWTGNFLHCLGCGWTRLPPHQGLGG
::::::::::::::::::::::::::::::::
gi|194 HLTRLRHDEIITLLKNVGERVVLEVEYELPPPAPENNPGIVSKTVDVSLYKEGNSFGFVL
200 210 220 230 240 250
170
FLJ002 RDHARWSG
gi|194 RGGAHEDGHKSRPLVLTYVRPGGPADREGSLKVGDRLLGVDGIPLHGASHAAALATLRQC
260 270 280 290 300 310
>>gi|73984538|ref|XP_858433.1| PREDICTED: similar to Glu (1001 aa)
initn: 796 init1: 773 opt: 773 Z-score: 928.1 bits: 180.7 E(): 5.4e-43
Smith-Waterman score: 773; 95.082% identity (99.180% similar) in 122 aa overlap (17-138:13-134)
10 20 30 40 50 60
FLJ002 QEWKRKWNSAFPSFSPADDGPYSKGGKDAGGADVSLACRRQSIPEEFRGITVVELIKKEG
:::::::::::::::.::.::::::::::::::.:.::: ::::
gi|739 MLCGLSRETPGEADDGPYSKGGKDAGGTDVALACRRQSIPEEFRGVTMVELNKKEG
10 20 30 40 50
70 80 90 100 110 120
FLJ002 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGIHLTRLRHDEIITLL
:::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::
gi|739 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNVGDYIRSVNGIHLTRLRHDEIITLL
60 70 80 90 100 110
130 140 150 160 170
FLJ002 KNVGERVVLEVEYELPPPGGCPWTGNFLHCLGCGWTRLPPHQGLGGRDHARWSG
::::::::::::::::::
gi|739 KNVGERVVLEVEYELPPPAPENNPGIITKTVDVSLYKEGNSFGFVLRGGAHEDIHKTRPL
120 130 140 150 160 170
>>gi|73984540|ref|XP_541752.2| PREDICTED: similar to Glu (1043 aa)
initn: 796 init1: 773 opt: 773 Z-score: 927.8 bits: 180.7 E(): 5.6e-43
Smith-Waterman score: 773; 95.082% identity (99.180% similar) in 122 aa overlap (17-138:13-134)
10 20 30 40 50 60
FLJ002 QEWKRKWNSAFPSFSPADDGPYSKGGKDAGGADVSLACRRQSIPEEFRGITVVELIKKEG
:::::::::::::::.::.::::::::::::::.:.::: ::::
gi|739 MLCGLSRETPGEADDGPYSKGGKDAGGTDVALACRRQSIPEEFRGVTMVELNKKEG
10 20 30 40 50
70 80 90 100 110 120
FLJ002 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGIHLTRLRHDEIITLL
:::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::
gi|739 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNVGDYIRSVNGIHLTRLRHDEIITLL
60 70 80 90 100 110
130 140 150 160 170
FLJ002 KNVGERVVLEVEYELPPPGGCPWTGNFLHCLGCGWTRLPPHQGLGGRDHARWSG
::::::::::::::::::
gi|739 KNVGERVVLEVEYELPPPAPENNPGIITKTVDVSLYKEGNSFGFVLRGGAHEDIHKTRPL
120 130 140 150 160 170
174 residues in 1 query sequences
2693465022 residues in 7827732 library sequences
Tcomplib [34.26] (2 proc)
start: Fri Feb 27 21:32:28 2009 done: Fri Feb 27 21:36:52 2009
Total Scan time: 631.940 Total Display time: 0.040
Function used was FASTA [version 34.26.5 April 26, 2007]