# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj05154.fasta.huge -Q ../query/FLJ00213.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00213, 186 aa vs ./tmplib.10216 library 2210808 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 5.0026+/-0.00375; mu= 10.5122+/- 0.253 mean_var=88.0643+/-19.510, 0's: 0 Z-trim: 2 B-trim: 0 in 0/40 Lambda= 0.136670 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0304 ( 2415 res) af07172 (2415) 119 33.3 0.1 KIAA1075 ( 1505 res) hj06716s1 (1505) 105 30.3 0.51 KIAA1465 ( 785 res) fh13187 ( 785) 93 27.7 1.7 KIAA0293 ( 1505 res) hg03205 (1505) 91 27.6 3.4 KIAA0742 ( 1338 res) hk04073s1 (1338) 87 26.7 5.5 KIAA1809 ( 800 res) fk01629 ( 800) 84 25.9 5.8 KIAA1865 ( 723 res) fj14303 ( 723) 83 25.7 6.2 KIAA1231 ( 1061 res) fh08195s1 (1061) 84 26.0 7 KIAA2036 ( 1322 res) pf06513 (1322) 84 26.1 8.2 KIAA2001 ( 689 res) bj00176 ( 689) 80 25.1 9 KIAA0311 ( 2324 res) hg00112s1 (2324) 86 26.8 9.1 KIAA1298 ( 738 res) fg04206 ( 738) 80 25.1 9.5 KIAA1929 ( 410 res) fj08985(revised) ( 410) 77 24.2 9.5 KIAA0768 ( 872 res) hk05006 ( 872) 80 25.2 11 KIAA1989 ( 1097 res) fh00385 (1097) 81 25.5 11 KIAA0600 ( 1080 res) fh08981 (1080) 80 25.3 12 KIAA1912 ( 589 res) fj18220 ( 589) 76 24.2 14 KIAA1494 ( 638 res) fj08673 ( 638) 76 24.2 15 KIAA1744 ( 855 res) pj01516 ( 855) 77 24.6 16 KIAA1913 ( 509 res) fk05496 ( 509) 74 23.7 17 KIAA1246 ( 832 res) hh00149a ( 832) 76 24.4 18 KIAA1673 ( 712 res) fg00690 ( 712) 75 24.1 18 KIAA0058 ( 181 res) ha01532 ( 181) 68 22.1 19 KIAA1030 ( 763 res) fh00432 ( 763) 75 24.1 19 FLJ00246 ( 1486 res) sj08543 (1486) 78 25.0 20 FLJ00362 ( 638 res) sh04538 ( 638) 73 23.6 22 KIAA0198 ( 562 res) ha02521 ( 562) 72 23.4 23 KIAA1155 ( 145 res) hh04176 ( 145) 65 21.4 24 KIAA1566 ( 1313 res) fh21445 (1313) 76 24.6 24 KIAA0533 ( 1645 res) hg03784 (1645) 77 24.9 25 KIAA0343 ( 1187 res) hg01457 (1187) 75 24.3 26 KIAA0905 ( 1229 res) hk10341 (1229) 75 24.3 26 KIAA1737 ( 400 res) pj00125 ( 400) 69 22.6 28 KIAA0182 ( 1157 res) ha02329s1 (1157) 74 24.1 29 KIAA1001 ( 551 res) hk09652 ( 551) 70 23.0 30 KIAA1443 ( 573 res) hj01820b ( 573) 70 23.0 31 KIAA1438 ( 1075 res) hk07374s1 (1075) 73 23.9 32 KIAA1017 ( 1095 res) hk07512s1 (1095) 72 23.7 37 KIAA1490 ( 749 res) fj08103 ( 749) 70 23.1 37 KIAA1726 ( 624 res) pf01109 ( 624) 69 22.8 38 KIAA1450 ( 1139 res) fh12401b (1139) 72 23.7 38 KIAA1882 ( 1176 res) aj00515 (1176) 72 23.7 39 FLJ00317 ( 111 res) sh07047 ( 111) 60 20.3 40 KIAA0866 ( 1984 res) hk00546s1 (1984) 74 24.4 42 FLJ00153 ( 497 res) sh06127 ( 497) 67 22.3 42 KIAA1024 ( 917 res) fg00935s1 ( 917) 70 23.2 43 FLJ00244 ( 1124 res) sj07756 (1124) 71 23.5 43 FLJ00287 ( 186 res) sh02562 ( 186) 62 20.9 43 FLJ00196 ( 284 res) sj02959 ( 284) 64 21.5 43 KIAA0952 ( 539 res) hj05359 ( 539) 67 22.4 45 >>KIAA0304 ( 2415 res) af07172 (2415 aa) initn: 103 init1: 50 opt: 119 Z-score: 124.1 bits: 33.3 E(): 0.1 Smith-Waterman score: 119; 24.713% identity (51.149% similar) in 174 aa overlap (14-178:2108-2274) 10 20 30 40 FLJ002 SAQNQKCLYTCQIKDGGVQPQFEIVPEDDPQNAIVSSSADACH : : . .::: :: .. . : .. KIAA03 LESQWHHYSGEASSSEEEPPSPDDKENQAPKRTGPHLRFEISSEDGF--SVEAESLEGAW 2080 2090 2100 2110 2120 2130 50 60 70 80 90 FLJ002 AELLRTISTTMGKLMPNLLP----AGADFFGFSHPAIHNLIQSCPGARKCINYQWVKFDV :.. .. . :. : .:: ..:. : :. : .. :::..: .: :: KIAA03 RTLIEKVQEARGHARLRHLSFSGMSGARLLGIHHDAVIFLAEQLPGAQRCQHY---KFRY 2140 2150 2160 2170 2180 2190 100 110 120 130 140 150 FLJ002 CKPGDGQLPEGLPENDAAMSFEAFQRQIFD-----EDQNDPLLPGSLDLPELQPAAFVSS . :.:: : . :: . ... :: .:. : :. : . . . :. KIAA03 HQQGEGQEEPPLNPHGAARAEVYLRKCTFDMFNFLASQHRVLPEGATCDEEEDEVQLRST 2200 2210 2220 2230 2240 2250 160 170 180 FLJ002 YQPMYLTHEPLVDTHLQHLKSPSQGSPIQSSD . : . :.. ...:::. :. KIAA03 RRATSL-ELPMA-MRFRHLKKTSKEAVGVYRSAIHGRGLFCKRNIDAGEMVIEYSGIVIR 2260 2270 2280 2290 2300 2310 >>KIAA1075 ( 1505 res) hj06716s1 (1505 aa) initn: 86 init1: 86 opt: 105 Z-score: 111.7 bits: 30.3 E(): 0.51 Smith-Waterman score: 109; 29.703% identity (47.525% similar) in 101 aa overlap (95-181:480-578) 70 80 90 100 110 120 FLJ002 GADFFGFSHPAIHNLIQSCPGARKCINYQWVKFDVCKPGDGQLPEGLPENDAAMSFEAFQ :.: .: :: . : : . : : KIAA10 LEPALLLKGDVMVTCYHKGGRGTDRTLVFRVQFHTCTIHGPQLTFPKDQLDEAWTDERFP 450 460 470 480 490 500 130 140 150 160 170 FLJ002 RQ-----IFDED---------QNDPLLPGSLDLPELQPAAFVSSYQPMYLTHEPLVDTHL : .:. . .::: . :.: .::. .::. . :: :: : KIAA10 FQASVEFVFSSSPEKIKGSTPRNDPSV--SVDYNTTEPAVRWDSYENFNQHHEDSVDGSL 510 520 530 540 550 560 180 FLJ002 QHLKSPSQGSPIQSSD : ..: .::: KIAA10 THTRGPLDGSPYAQVQRPPRQTPPAPSPEPPPPPMLSVSSDSGHSSTLTTEPAAESPGRP 570 580 590 600 610 620 >>KIAA1465 ( 785 res) fh13187 (785 aa) initn: 54 init1: 54 opt: 93 Z-score: 102.4 bits: 27.7 E(): 1.7 Smith-Waterman score: 93; 25.773% identity (53.608% similar) in 97 aa overlap (75-162:52-148) 50 60 70 80 90 100 FLJ002 ELLRTISTTMGKLMPNLLPAGADFFGFSHPAIHNLIQSCPGARKCINYQWVKFDVCKPGD :. .. ::: :.. .: : . KIAA14 RRGFSPRTFTESRRILGAAMFPLRALWLVWALLGVAGSCPEPCACVDKYAHQFADCAYKE 30 40 50 60 70 80 110 120 130 140 150 FLJ002 -GQLPEGLPENDAAMSFEA-----FQRQIF-DEDQNDPLLPGSLDLPELQPAAF--VSSY ..::::: : ...:. : ..: : : : : . .. ..:.:. .:. KIAA14 LREVPEGLPANVTTLSLSANKITVLRRGAFADVTQVTSLWLAHNEVRTVEPGALAVLSQL 90 100 110 120 130 140 160 170 180 FLJ002 QPMYLTHEPLVDTHLQHLKSPSQGSPIQSSD . . :.: KIAA14 KNLDLSHNFISSFPWSDLRNLSALQLLKMNHNRLGSLPRDALGALPDLRSLRINNNRLRT 150 160 170 180 190 200 >>KIAA0293 ( 1505 res) hg03205 (1505 aa) initn: 106 init1: 62 opt: 91 Z-score: 96.8 bits: 27.6 E(): 3.4 Smith-Waterman score: 91; 23.077% identity (53.846% similar) in 156 aa overlap (3-154:639-789) 10 20 30 FLJ002 SAQNQKCLYTCQIKD-GGVQPQFEIVPEDDPQ :: : : :... :.. :... .:: . KIAA02 EILARPKPWRKLTVKGKEPFIKMKQFLSDEQNVLALRTIQVRQRGSITPRIR-TPETGSD 610 620 630 640 650 660 40 50 60 70 80 90 FLJ002 NAIVSSSADACHAELLRTISTTMGKLMPNLLPAGADFFGFSHPAIHNLIQSCPGARKCIN .:: : .: . . . .. : . :. . :. ::...... ::. .. KIAA02 DAIKSILEQAKKEIESQKGGEPKTSVAPLSIANGTTPASTSEDAIKSILEQ---ARREMQ 670 680 690 700 710 720 100 110 120 130 140 FLJ002 YQW---VKFDVCKPGDGQLPEGLPENDAAMSFEAFQRQIFDEDQNDPLLPGSLDLPELQP : ....: : ..: . :: . . . .... :.. :: :.: KIAA02 AQQQALLEMEVA-PRGRSVPPSPPERPSLATASQNGAPALVKQEEGSGGPAQAPLPVLSP 730 740 750 760 770 780 150 160 170 180 FLJ002 AAFVSSYQPMYLTHEPLVDTHLQHLKSPSQGSPIQSSD ::::.: KIAA02 AAFVQSIIRKVKSEIGDAGYFDHHWASDRGLLSRPYASVSPSLSSSSSSGYSGQPNGRAW 790 800 810 820 830 840 >>KIAA0742 ( 1338 res) hk04073s1 (1338 aa) initn: 87 init1: 62 opt: 87 Z-score: 93.1 bits: 26.7 E(): 5.5 Smith-Waterman score: 87; 24.084% identity (52.356% similar) in 191 aa overlap (1-180:281-467) 10 20 FLJ002 SAQNQKCLYTCQIKDGG-VQPQF---EIVP :..:. : . : :. . ..:.. . :: KIAA07 VDPSLIHVEVVHDNLVTCGNSARIGAVKRKSSENNGTLVSKQAKSCSEASPSMCPVQSVP 260 270 280 290 300 310 30 40 50 60 70 80 FLJ002 EDDPQNAIVSSSADACHAELLRTISTTMGKLMPNLLPAGADFFGFSHPAIHNLIQSCPGA .. ... .: . .. : :: .. : : : : . .. . :.:: .. KIAA07 TTVFKEILLGCTAATPPSKDPRQQSTPQAANSPPNLGAKIPQ-GCHKQSLPEEISSCLNT 320 330 340 350 360 90 100 110 120 130 140 FLJ002 RKCINYQWVKFDVCKPGDGQLPEGLPENDAAMSFE---AFQRQIFDEDQNDPL--LPGSL .. . .: :::: : . . .: . : . . . ::.. : .: .: KIAA07 KS--EALRTKPDVCKAGLLSKSSQIGTGDLKILTEPKGSCTQPKTNTDQENRLESVPQAL 370 380 390 400 410 420 150 160 170 180 FLJ002 D-LP-ELQPAAFVSSYQPMYLTHEPLVDTHLQHLKSPSQGSPIQSSD :: : :. .:: . ... : .. ::.: :::. : KIAA07 TGLPKECLPTK-ASSKAELEIANPPELQKHLEHAPSPSDVSNAPEVKAGVNSDSPNNCSG 430 440 450 460 470 480 KIAA07 KKVEPSALACRSQNLKESSVKVDNESCCSRSNNKIQNAPSRKSVLTDPAKLKKLQQSGEA 490 500 510 520 530 540 >>KIAA1809 ( 800 res) fk01629 (800 aa) initn: 83 init1: 59 opt: 84 Z-score: 92.7 bits: 25.9 E(): 5.8 Smith-Waterman score: 84; 32.857% identity (52.857% similar) in 70 aa overlap (117-184:339-403) 90 100 110 120 130 140 FLJ002 RKCINYQWVKFDVCKPGDGQLPEGLPENDAAMSFEAFQRQIFDEDQNDPLLPGSLDLPE- ::.: :.. . .. :: :: . . KIAA18 LGAEEMALATHHPSAFDRVLRLNPMAMEPPAMDFSRRLRELAGNTSSPPLSPGRPSPMQR 310 320 330 340 350 360 150 160 170 180 FLJ002 -LQPAAFVSSYQPMYLTHEPLVDTHLQHLKSPSQGSPIQSSD ::: : . .: .:. :: :: ::: :..: KIAA18 LLQP--FQPGSKPPFLATPPL--PPLQSAPPPSQ-PPVKSKSCEFCGKTFKFQSNLVVHR 370 380 390 400 410 420 KIAA18 RSHTGEKPYKCNLCDHACTQASKLKRHMKTHMHKSSPMTVKSDDGLSTASSPEPGTSDLV 430 440 450 460 470 480 >>KIAA1865 ( 723 res) fj14303 (723 aa) initn: 143 init1: 50 opt: 83 Z-score: 92.1 bits: 25.7 E(): 6.2 Smith-Waterman score: 83; 28.571% identity (47.959% similar) in 98 aa overlap (56-147:399-491) 30 40 50 60 70 80 FLJ002 PEDDPQNAIVSSSADACHAELLRTISTTMGKLMPNLLPAGADFFGFSHPAIHNLIQ---- .:. .::: .. :: . :. : : KIAA18 YQDCMKDFGRGLSSGFKYLEYEKKHGSGDWRLLGDLLPEAVRFFKEGVPGADMLPQPYLD 370 380 390 400 410 420 90 100 110 120 130 FLJ002 -SCPGARKCINYQWVKFDVCKPGDGQLPEGLPEN-DAAMSFEAFQRQIFDEDQNDPLLPG ::: . . . :: : :: . : . :: :.. .:. : .. : KIAA18 ASCPMLPTAL-VSLSRAPSAPPGTGALPPAAPSGRGAAASLR--KRKASPEPPDSA--EG 430 440 450 460 470 480 140 150 160 170 180 FLJ002 SLDLPELQPAAFVSSYQPMYLTHEPLVDTHLQHLKSPSQGSPIQSSD .: : : : KIAA18 ALKLGEEQQRQQWMANQSEALKLTMSAGGFAAPGHAAGGPPPPPPPLGPHSNRTTPPESA 490 500 510 520 530 540 >>KIAA1231 ( 1061 res) fh08195s1 (1061 aa) initn: 66 init1: 44 opt: 84 Z-score: 91.2 bits: 26.0 E(): 7 Smith-Waterman score: 84; 25.234% identity (49.533% similar) in 107 aa overlap (84-185:315-411) 60 70 80 90 100 110 FLJ002 MGKLMPNLLPAGADFFGFSHPAIHNLIQSCPGARKCINYQWVKFDVCKPGDGQLPEGLPE :: : ....... . .: KIAA12 QQHLNSHDEKLDVFSRTRGRGRGRGKRRFGPGRRPGRPPKFIRLEITSE------NGEKS 290 300 310 320 330 120 130 140 150 160 170 FLJ002 NDAAMSFEAFQ-RQIFDEDQNDPLLPGSLDLPELQ--PAAFVSSYQPMYLTHEPLVDTHL .:..... : .. ::: .: ..:: :: : . . : ::: .:: KIAA12 DDGTQDLLHFPTKEQFDE--AEPATLNGLDQPEQTTIPIPQLPQETQSSLEHEP--ETHT 340 350 360 370 380 390 180 FLJ002 QHLKSPSQGS--PIQSSD ::. . : : ::. KIAA12 LHLQPQHEESVVPTQSTLTADDMRRAKRIRLELQNAALQHLFIRKSFRPFKCLQCGKAFR 400 410 420 430 440 450 >>KIAA2036 ( 1322 res) pf06513 (1322 aa) initn: 102 init1: 65 opt: 84 Z-score: 90.0 bits: 26.1 E(): 8.2 Smith-Waterman score: 84; 29.213% identity (51.685% similar) in 89 aa overlap (93-177:1130-1214) 70 80 90 100 110 FLJ002 PAGADFFGFSHPAIHNLIQSCPGARKCINYQWVKFDVCKPGD--GQL-PEGLPENDAAMS .....:. .: . : : :: : : : KIAA20 AALLGAPTQGPSPQGWHAGGDAYAKWHTRPHYLQLDLLQPRNLTGILVPETGSSNAYASS 1100 1110 1120 1130 1140 1150 120 130 140 150 160 170 FLJ002 FE-AFQRQIFDEDQNDPLLPGSLDLPELQPAAFVSSYQPMYLTHEPLVDTHLQHLKSPSQ : :. . . . :::: : ::...:: . :: . :. : ..:: KIAA20 FSLQFSSNGLHWHDYRDLLPGILPLPKVSPAQGRWGQQPTM----PFCGFHSLCPQGPSS 1160 1170 1180 1190 1200 1210 180 FLJ002 GSPIQSSD KIAA20 VPEGHGLHSMLVEYLVSSRDCALWSRGLGATVTWMLETIQVAQTQGRYVKPARERGWGDT 1220 1230 1240 1250 1260 1270 >>KIAA2001 ( 689 res) bj00176 (689 aa) initn: 53 init1: 53 opt: 80 Z-score: 89.2 bits: 25.1 E(): 9 Smith-Waterman score: 80; 28.395% identity (51.852% similar) in 81 aa overlap (105-181:551-623) 80 90 100 110 120 130 FLJ002 AIHNLIQSCPGARKCINYQWVKFDVCKPGDGQLPEGLPENDAAM--SFEAFQRQIFDEDQ :: ::: :..: . .. ... .:: : KIAA20 MKQKEEEEEIRNKNEEEGESKDEEDEDEDGGQKPEGEPQQDPGTEETYGEVEEEPLDEAQ 530 540 550 560 570 580 140 150 160 170 180 FLJ002 NDPLLPGSLDLPELQPAAFVSSYQPMYLTHEPLVDTHLQHL--KSPSQGSPIQSSD .: : .: :..:. .: : : : : ... :: .: KIAA20 DDDLD----ELMEMEPTFVHASSQ----TSGPTSGYHAENFLGASPPIIQPSRRRNQNRV 590 600 610 620 630 KIAA20 PLLEGLPGTNSPFYSSPQLIRRTGRLGQRQVRRRPPVLFRLTPRQGGHRAARGRIRV 640 650 660 670 680 186 residues in 1 query sequences 2210808 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:44:44 2009 done: Fri Feb 27 10:44:44 2009 Total Scan time: 0.360 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]