hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/shimazu/full/sj/sj04945/interpro/cnk_1/seq.in
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Query:  sj04945  333

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MYSc     Myosin. Large ATPases.                         -74.3    1.8e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MYSc       1/1       1   333 []     1   771 []   -74.3  1.8e-25

Alignments of top-scoring domains:
MYSc: domain 1 of 1, from 1 to 333: score -74.3, E = 1.8e-25
                   *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav
                                                                     
     sj04945     -    ----------------------------------------------- -    

                   NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre
                      kq                                             
     sj04945     1 ---KQH------------V------------------------------- 4    

                   keNQsIiISGESGAGKTEatKkimqYLAavsgsvesvedqiLesNPiLEA
                                                                     
     sj04945     - -------------------------------------------------- -    

                   FGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEKSRVVsQakg
                                                                    g
     sj04945     5 -------------------------------------------------G 5    

                   ERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggtpfankrys
                   ERN+H FYQLL+G  + +++el+L++   +p  Y+++ qg+         
     sj04945     6 ERNFHAFYQLLRGSEDKQLHELHLER---NPAVYNFTHQGA--------- 43   

                   sgcltvd.giD.DaeeFkeTdEvtlkAmrvlGfseeEqesIFrilAAILH
                   + + tv +  D+D +  ++++E    Amrv+Gfs eE+es+ rilAAILH
     sj04945    44 GLNMTVHsALDsDEQSHQAVTE----AMRVIGFSPEEVESVHRILAAILH 89   

                   LGNieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeLekaLtkR
                   LGNieF e+++ g+ + ++ + va e  ++ +AeL   + +  +++L+ R
     sj04945    90 LGNIEFVETEE-GGLQKEGLA-VAEEALVDHVAELTATPRDLVLRSLLAR 137  

                   kiktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLVkrINksl..
                   ++  gg   + i k ++  +A+yaRDA AKa+Y RLF W+VkrIN+ +++
     sj04945   138 TVASGGR--ELIEKGHTAAEASYARDACAKAVYQRLFEWVVKRINSVMep 185  

                   .........sayfIGVLDIyGFEiFekNSFEQfCINyaNEKLQQfFnqhv
                   +++++++++++++IGVLDIyGFE+F +NSFEQfCINy+NEKLQQ+F+q++
     sj04945   186 rgrdprrdgKDTVIGVLDIYGFEVFPVNSFEQFCINYCNEKLQQLFIQLI 235  

                   FKlEQEEYerEGIeWtfIdFfliDNQpciDLIEkKgkrPlGIlslLDEeC
                   +K+EQEEYerEGI W  +++f  +N  ++DL+E +   + GIl+ LDE+C
     sj04945   236 LKQEQEEYEREGITWQSVEYF--NNATIVDLVERP---HRGILAVLDEAC 280  

                   lfHAqPkgTDqtFleKLnkalyhqhhkkhphfskprkSlkk.gkp.kkrf
                        +  TD  Fl+ L     ++hh  h h+++     ++ +  +k+ +
     sj04945   281 SS--AGTITDRIFLQTL-----DTHHRHHLHYTS-----RQlCPTdKTME 318  

                   grtaFiikHYAGdVtYnveGFLeKNkDtLfedlieLlqsSknpliasLFp
                     ++F+ikHYAGdVt                                   
     sj04945   319 FGRDFRIKHYAGDVT----------------------------------- 333  

                   eeadqsssaakekssggagksrkagrrepskgtisskkrppTvGsqFksL
                                                                     
     sj04945     - -------------------------------------------------- -    

                   neLmetLnstnPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvLEniRIR
                                                                     
     sj04945     - -------------------------------------------------- -    

                   raGFPyRlpfdeFlqRYkvLlpktwppwggewknrlfgdakkacealLqs
                                                                     
     sj04945     - -------------------------------------------------- -    

                   lglgiegdnldeeeyqiGkTKvFlRnpgqlaeLEelRee<-*
                                                             
     sj04945     - ---------------------------------------    -    

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