hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/shimazu/full/sj/sj04945/interpro/cnk_1/seq.in
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Query:  sj04945  333

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Myosin_head Myosin head (motor domain)                 -147.1    4.1e-10   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Myosin_head   1/1       1   333 []     1   795 []  -147.1  4.1e-10

Alignments of top-scoring domains:
Myosin_head: domain 1 of 1, from 1 to 333: score -147.1, E = 4.1e-10
                   *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrlp
                                                                 k+  
     sj04945     1    -------------------------------------------KQ-- 2    

                   iYteeiiakYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA
                                       H                             
     sj04945     3 --------------------H----------------------------- 3    

                   GKTEntKkvmqYlAsvsgstpkvssaevtpnkeegsledqiLqsNPiLEA
                                                                     
     sj04945     - -------------------------------------------------- -    

                   FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy
                                               +                     
     sj04945     4 ----------------------------V--------------------- 4    

                   QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc
                      gERNFH FYQLL g  +++ + eL+L++  +p  Y+++ q++  n +
     sj04945     5 ---GERNFHAFYQLLRGSEDKQ-LHELHLER--NPAVYNFTHQGAGLNMT 48   

                   ytvyrrDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNie
                   +          D +  + + +A+++iGf+ ee +s+ rilAAILhLGNie
     sj04945    49 VHS----ALDSDEQSHQAVTEAMRVIGFSPEEVESVHRILAAILHLGNIE 94   

                   GFkqdqat.TGkeeqAGvtvsedteealeiiaeLLGvDaeeLekaLlsrr
                    F+++ + +  ke+ A    + +++  +  +aeL  +     +++Ll r+
     sj04945    95 -FVETEEGgLQKEGLA----VAEEAL-VDHVAELTATPRDLVLRSLLART 138  

                   i.ktGgggkrretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaL
                   + + G     re + k+ +  +A+yaRDA AKa Y RLF W+V++iN ++
     sj04945   139 VaSGG-----RELIEKGHTAAEASYARDACAKAVYQRLFEWVVKRINSVM 183  

                   sakeQasdSrGGqaaegdDTVSITVVdlPraaldkranfIGvLDIyGFEI
                   +      +                     ++  d +  +IGvLDIyGFE+
     sj04945   184 EPRG---R---------------------DPRRDGKDTVIGVLDIYGFEV 209  

                   FaekNSFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglD
                   F  +NSFEQ+cINY+NEKLQQ+F+++++k EQEEY+rEgI+W  ++y ++
     sj04945   210 F-PVNSFEQFCINYCNEKLQQLFIQLILKQEQEEYEREGITWQSVEY-FN 257  

                   nqacidLIEkKmkPpGIlslLDEeCrfPka.tDqtFldKLlqtfsskhpr
                   n +++dL+E   +  GIl+ LDE+C      tD  Fl+ L  ++  +h+ 
     sj04945   258 NATIVDLVER--PHRGILAVLDEACSSAGTiTDRIFLQTLDTHH-RHHL- 303  

                   lthFaqkpgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfdd
                                             HY                      
     sj04945   304 --------------------------HY---------------------- 305  

                   lisllksSsdvpllaeLFpeeelseaAnrrnkapdfeadfdeeeaaaksa
                          +s           +++                           
     sj04945   306 -------TSR----------QLC--------------------------- 311  

                   klgsgkgksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKP
                          +  k++ f                                   
     sj04945   312 -------PTDKTMEF---------------------G------------- 320  

                   NekKkagqFDnslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrl
                         ++F                                 ++ +    
     sj04945   321 ------RDF---------------------------------RIKH---- 327  

                   LapktwppgfrpkwvgdakkgceliLqslrqtpgnldkeeyrfGkTKiFf
                    ++ ++                                            
     sj04945   328 -YAGDV-------------------------------------------- 332  

                   R<-*
                       
     sj04945   333 T    333  

//