# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj04630.fasta.huge -Q ../query/FLJ00390.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00390, 322 aa vs ./tmplib.10216 library 2210672 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.5759+/-0.00573; mu= 20.5609+/- 0.389 mean_var=178.8765+/-38.413, 0's: 0 Z-trim: 0 B-trim: 4 in 1/39 Lambda= 0.095895 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0728 ( 1637 res) fh22477 (1637) 123 29.3 1.9 FLJ00365 ( 399 res) sh05134 ( 399) 112 26.7 3 KIAA0465 ( 4433 res) hg01123s2 (4433) 122 30.0 3.3 FLJ00248 ( 501 res) sj08681 ( 501) 111 26.7 3.6 KIAA0481 ( 732 res) hm00132 ( 732) 109 26.7 5.2 KIAA0900 ( 503 res) hk09606s1 ( 503) 106 26.0 5.8 KIAA0863 ( 1181 res) hk06535 (1181) 106 26.7 8.5 KIAA1526 ( 963 res) fj04743(revised) ( 963) 105 26.4 8.6 KIAA0697 ( 2486 res) hk04486s1 (2486) 108 27.6 9.7 FLJ00403 ( 225 res) sj07657 ( 225) 97 24.1 9.7 KIAA0641 ( 1326 res) hj03494s1 (1326) 105 26.7 9.8 KIAA1357 ( 836 res) fj01906 ( 836) 102 25.9 11 KIAA0744 ( 619 res) hk04110 ( 619) 100 25.4 11 FLJ00253 ( 349 res) sj09455 ( 349) 97 24.5 12 KIAA1608 ( 872 res) fj20142 ( 872) 101 25.8 12 FLJ00224 ( 896 res) sj06244 ( 896) 101 25.8 12 KIAA1614 ( 1208 res) fj12973 (1208) 102 26.2 13 FLJ00193 ( 491 res) sj02629 ( 491) 97 24.8 14 FLJ00280 ( 440 res) sh01728 ( 440) 96 24.5 14 KIAA0346 ( 1682 res) hg01508s1 (1682) 102 26.4 15 KIAA0936 ( 640 res) hh04647 ( 640) 97 25.0 15 KIAA1061 ( 693 res) hj00491 ( 693) 96 24.9 18 FLJ00192 ( 1437 res) sj02564 (1437) 99 25.9 18 KIAA1816 ( 1162 res) fh16716 (1162) 98 25.6 18 KIAA0612 ( 1810 res) hg00654s1 (1810) 100 26.2 18 KIAA1814 ( 1285 res) ph00952 (1285) 98 25.7 19 KIAA0296 ( 1838 res) hf00260 (1838) 99 26.1 20 FLJ00322 ( 659 res) sh08187 ( 659) 94 24.6 21 KIAA0595 ( 1666 res) hj02929s1 (1666) 98 25.9 21 KIAA1461 ( 1498 res) fh17578 (1498) 97 25.7 22 FLJ00406 ( 261 res) sj08464 ( 261) 89 23.1 22 KIAA0985 ( 697 res) hj08038 ( 697) 92 24.3 26 KIAA0505 ( 200 res) hh00043 ( 200) 86 22.5 26 KIAA1002 ( 962 res) hk09859 ( 962) 93 24.7 27 KIAA0374 ( 584 res) hh00327 ( 584) 90 23.9 29 FLJ00304 ( 381 res) sh05037 ( 381) 88 23.3 29 FLJ00362 ( 638 res) sh04538 ( 638) 90 24.0 30 KIAA1020 ( 638 res) fg00473s1 ( 638) 90 24.0 30 KIAA1663 ( 347 res) hk01115 ( 347) 87 23.1 31 KIAA1994 ( 1117 res) bh00052 (1117) 92 24.7 32 KIAA0970 ( 1151 res) hh13674 (1151) 92 24.8 32 KIAA1784 ( 1167 res) fh08226 (1167) 92 24.8 32 KIAA0293 ( 1505 res) hg03205 (1505) 93 25.1 33 KIAA1339 ( 409 res) fj00071 ( 409) 87 23.2 33 KIAA1511 ( 1253 res) fg04486(revised) (1253) 92 24.8 33 KIAA1683 ( 832 res) fh24307 ( 832) 90 24.2 34 KIAA1642 ( 1997 res) hh02864(revised) (1997) 94 25.5 34 KIAA1139 ( 1124 res) hk00330 (1124) 91 24.6 35 FLJ00382 ( 482 res) sj02645 ( 482) 87 23.4 35 FLJ00420 ( 613 res) sj09535 ( 613) 88 23.7 36 >>KIAA0728 ( 1637 res) fh22477 (1637 aa) initn: 182 init1: 123 opt: 123 Z-score: 101.3 bits: 29.3 E(): 1.9 Smith-Waterman score: 123; 33.333% identity (66.667% similar) in 60 aa overlap (162-221:1259-1318) 140 150 160 170 180 190 FLJ003 PSMDAVDATMEKLRAQCLSRGASGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLD :::..:.: . .. .:: .:. . . . KIAA07 ELREFANFDFDIWRKKYMRWMNHKKSRVMDFFRRIDKDQDGKITRQEFIDGILSSKFPTS 1230 1240 1250 1260 1270 1280 200 210 220 230 240 250 FLJ003 QAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDL . : .: .::.:.: .: ::. ::.: KIAA07 RLEMSAVADIFDRDGDGYIDYYEFVAALHPNKDAYKPITDADKIEDEVTRQVAKCKCAKR 1290 1300 1310 1320 1330 1340 >>FLJ00365 ( 399 res) sh05134 (399 aa) initn: 57 init1: 57 opt: 112 Z-score: 97.9 bits: 26.7 E(): 3 Smith-Waterman score: 112; 26.415% identity (52.201% similar) in 159 aa overlap (148-298:195-344) 120 130 140 150 160 170 FLJ003 RTLGQTQASCPEPRPSMDAVDATMEKLRAQCLSRGASGIQGLA----RFFRQLDRDGSRS :: . : ..::. .. ..::: . :. FLJ003 EALGVSVTDYTFEDCQLALAEGQLRLPADTCLLEFARLVRGLGLKPEKLEKDLDRYSERA 170 180 190 200 210 220 180 190 200 210 220 FLJ003 LDADEFRQGLAKLGLVLDQAEA---EGVCRKWDRNGSGTLDLEEFLRALRPPMSQAREA- . :.:... :. . : . .:..::: .::.: . :: :: FLJ003 RMKGGEKIGIAEFAASLEVPVSDLLEDMFSLFDESGSGEVDLRECVVALSVVCRPARTLD 230 240 250 260 270 280 230 240 250 260 270 280 FLJ003 VIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQ .: :: . :: : :: . . . .: : ...: .:. :: :. FLJ003 TIQLAFKMYGAQEDGSVGEGDLSCILK----TALGVAELTVTDLFR----AIDQEEK-GK 290 300 310 320 330 290 300 310 320 FLJ003 VTLAEFQDYYSGVSASMNTDEEFVAMMTSAWQL .:.:.:. . FLJ003 ITFADFHRFAEMYPAFAEEYLYPDQTHFESCAETSPAPIPNGFCADFSPENSDAGRKPVR 340 350 360 370 380 390 >>KIAA0465 ( 4433 res) hg01123s2 (4433 aa) initn: 187 init1: 122 opt: 122 Z-score: 97.1 bits: 30.0 E(): 3.3 Smith-Waterman score: 122; 33.333% identity (63.333% similar) in 60 aa overlap (162-221:4094-4153) 140 150 160 170 180 190 FLJ003 PSMDAVDATMEKLRAQCLSRGASGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLD :::..:.: . .. .:: .:. . KIAA04 ELKEFANFDFDVWRKKYMRWMNHKKSRVMDFFRRIDKDQDGKITRQEFIDGILASKFPTT 4070 4080 4090 4100 4110 4120 200 210 220 230 240 250 FLJ003 QAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDL . : .: .::.:.: .: ::. ::.: KIAA04 KLEMTAVADIFDRDGDGYIDYYEFVAALHPNKDAYRPTTDADKIEDEVTRQVAQCKCAKR 4130 4140 4150 4160 4170 4180 >>FLJ00248 ( 501 res) sj08681 (501 aa) initn: 70 init1: 46 opt: 111 Z-score: 96.4 bits: 26.7 E(): 3.6 Smith-Waterman score: 111; 32.593% identity (47.407% similar) in 135 aa overlap (15-137:340-466) 10 20 30 40 FLJ003 SQRGKGTCPGSHRNHASSLPSHGLVSIQGIS--APA-GQWPAP- : : : . .: .:. ::: :.: . FLJ002 DPKYEAKAGPRPVWGANCSSGASFSGRTLCHPSFWPLYEAASGRGLRPVAPATGHWNGQQ 310 320 330 340 350 360 50 60 70 80 90 FLJ003 -PPWSQEGMQCHRDLALSQALW--GWQ----LSKQSGWAHPSLPHSPLPSTVHSCSWAPP :: . . : .:. ::. : : . ::: :: : : . : : FLJ002 APPDAGFPVVCCEDVFLSDPLLPRGQRVPLYLSKAPQQMMGSLKLLP-PPPIMSARVLP- 370 380 390 400 410 420 100 110 120 130 140 150 FLJ003 HLQRHLPLATVSPGTTQLTQGPAGRTL-GQTQASCPEPRPSMDAVDATMEKLRAQCLSRG : . .:.:. :. :: .: : : : ::::: .:: FLJ002 -----RPSPSRGPSTAWLS-GPELIALTGLLQMSQGEPRPSSSAVGPPDHTSDPPSPCGS 430 440 450 460 470 480 160 170 180 190 200 210 FLJ003 ASGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDL FLJ002 PSSSQGADLSLPQTPDTHCP 490 500 >>KIAA0481 ( 732 res) hm00132 (732 aa) initn: 47 init1: 47 opt: 109 Z-score: 93.6 bits: 26.7 E(): 5.2 Smith-Waterman score: 109; 30.682% identity (56.818% similar) in 88 aa overlap (98-181:50-133) 70 80 90 100 110 120 FLJ003 QSGWAHPSLPHSPLPSTVHSCSWAPPHLQRHLPLATVSPGTTQLTQGPAGRTLGQTQASC ::: : . :: : ... .: : :. KIAA04 PTYTMKRCRSDELQQQQGEEDGAGLEDAASHLPGADLRPGETTGANSAGGPTSDAGAAAA 20 30 40 50 60 70 130 140 150 160 170 180 FLJ003 PEPRPSMDAVDATMEKLRAQCLSRGASGIQGLARFF----RQLDRDGSRSLDADEFRQGL :.: : : ..:. : ::.:. .:: ..: :. .:. . : :... .: KIAA04 PNPGPRSKPPD--LKKI--QQLSEGSMFGHGLKHLFHSRRRSREREHQTSQDSQQHQQQQ 80 90 100 110 120 130 190 200 210 220 230 240 FLJ003 AKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQAREAVIAAAFAKLDRSGD KIAA04 GMSDHDSPDEKERSPEMHRVSYAMSLHDLPARPTAFNRVLQQIRSRPSIKRGASLHSSSG 140 150 160 170 180 190 >>KIAA0900 ( 503 res) hk09606s1 (503 aa) initn: 98 init1: 60 opt: 106 Z-score: 92.6 bits: 26.0 E(): 5.8 Smith-Waterman score: 106; 22.222% identity (46.032% similar) in 126 aa overlap (9-132:278-401) 10 20 30 FLJ003 SQRGKGTCPGSHRNHASSLPSHGLVSIQGISAPAGQWP :.:. . : . . .... : : KIAA09 DYSYPATPNHSLHPQPVTPSYAAGDVPPHGPASQAAEHEYRPPSASARHMALNRPQQPPP 250 260 270 280 290 300 40 50 60 70 80 90 FLJ003 APPPWSQEGMQCHRDLALSQALWGWQLSKQSGWAHPSLPHSPLPSTVHSCSWAPPHLQRH ::: . :: : .: : .: .. . .:: : : : : . . . KIAA09 PPPPQAPEGSQASAPMA--PADYGMLPAQIIEYYNPSGPPPPPPPPVIPSAQTAFVSPLQ 310 320 330 340 350 360 100 110 120 130 140 150 FLJ003 LPLATVSPGTTQLTQG--PAGRTLGQTQASCPEPRPSMDAVDATMEKLRAQCLSRGASGI .:. :.... :.. : . : .. : : : KIAA09 MPMQPPFPASASSTHAAPPHPPSTGLLVTAPPPPGPPPPPPGPPGPGSSLSSSPMHGPPV 370 380 390 400 410 420 160 170 180 190 200 210 FLJ003 QGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFL KIAA09 AEAKRQEPAQPPISDARSDLLAAIRMGIQLKKVQEQREQEAKREPVGNDVATILSRRIAV 430 440 450 460 470 480 >>KIAA0863 ( 1181 res) hk06535 (1181 aa) initn: 118 init1: 65 opt: 106 Z-score: 89.7 bits: 26.7 E(): 8.5 Smith-Waterman score: 110; 26.357% identity (57.364% similar) in 129 aa overlap (13-123:313-438) 10 20 30 40 FLJ003 SQRGKGTCPGSHRNHASSLPSHGLVSIQGISAPAGQWPA-PP ..: . :. :.. . :::.. :: :: KIAA08 HILTSDIHRDLENKLRSVISEHIKRTGLLKQTHIAPKPAAHLAAPANGSAPSA--PAQPP 290 300 310 320 330 340 50 60 70 80 90 FLJ003 ------PWSQEGMQCHRDLALSQALWGWQLSKQ---SGWAHPSLPHSPLPSTVHSCSWAP : .. . . ....:. : .:... .: .: .: :::: .: . : KIAA08 CFHLALPQNSPSPAAGQPVTVAQGAPG-SLTHSPPAAGQSHMTLVSSPLPVGQNSLTLQP 350 360 370 380 390 100 110 120 130 140 FLJ003 P-----HLQRHLPL-ATVSPGTTQLTQ--GPAGRTLGQTQASCPEPRPSMDAVDATMEKL : :.. .:: .:.: . :.: ::.....: . KIAA08 PAPQPVFLSHGVPLHQSVNPPVLPLSQPVGPVNKSVGTSVLPINQTVRPGVLPLTQPVGP 400 410 420 430 440 450 150 160 170 180 190 200 FLJ003 RAQCLSRGASGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDR KIAA08 INRPVGPGVLPVSPSVTPGVLQAVSPGVLSVSRAVPSGVLPAGQMTPAGQMTPAGVIPGQ 460 470 480 490 500 510 >>KIAA1526 ( 963 res) fj04743(revised) (963 aa) initn: 73 init1: 50 opt: 105 Z-score: 89.6 bits: 26.4 E(): 8.6 Smith-Waterman score: 105; 30.625% identity (50.000% similar) in 160 aa overlap (17-160:667-817) 10 20 30 40 FLJ003 SQRGKGTCPGSHRNHASSLPS-HGLV--SIQGISAPAGQWPAPPPW ::.:: : : . :. : ::: :.: KIAA15 PLPRPPPLAQGNDLPLGQPRKLGREDLQPPSSMPSCSGTVFSAPQNRSPPAGTAPTPGTS 640 650 660 670 680 690 50 60 70 80 90 FLJ003 SQEGMQCHRDLA-LSQALWGWQLSKQSGWAHPSL----PHSPLPSTVHSCSWAPPHLQRH : . . : .: : ::. :: .: : .:.: :.: ::::. KIAA15 SAQDLPSSPIYASVSPAN---PSSKRPLDAHLALVNQHPIGPFPR-VQS----PPHLKSP 700 710 720 730 740 100 110 120 130 140 150 FLJ003 LPLATVSPGTTQLTQGPAGRT--LGQTQ------ASCPEPRPSMDAVDATMEKLRAQCLS :::. : : .:.:. : .: . :. .:... : : . :. :: KIAA15 SAEATVAGGCL-LPPSPSGHPDQTGTNQHFVMVEVHRPDSEPDVNEVRALPQTRTASTLS 750 760 770 780 790 800 160 170 180 190 200 210 FLJ003 RGASGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTL . ... : :. KIAA15 QLSDSGQTLSEDSGVDAGEAEASAPGRGRQSVSTKSRSSKELPRNERPTDGANKPPGLLE 810 820 830 840 850 860 >>KIAA0697 ( 2486 res) hk04486s1 (2486 aa) initn: 89 init1: 89 opt: 108 Z-score: 88.6 bits: 27.6 E(): 9.7 Smith-Waterman score: 108; 30.137% identity (58.904% similar) in 73 aa overlap (66-135:1986-2057) 40 50 60 70 80 90 FLJ003 QWPAPPPWSQEGMQCHRDLALSQALWGWQLSKQSGWAHP--SLPHSPLPSTVHSCSWAPP : .:. .: :. . : : .: . :: KIAA06 SSSEQEAGSPPVVETTNTRPPNSSSSSGSSSAHSNQQQPPGSVSQEPRPPLQQS-QVPPP 1960 1970 1980 1990 2000 2010 100 110 120 130 140 150 FLJ003 HLQRHLP-LATVSPGTTQLTQGPAGRTLGQTQASCPEPRPSMDAVDATMEKLRAQCLSRG ... .: ::: : .. . .:. . :: .::.: :.:. KIAA06 EVRMTVPPLATSSAPVAVPSTAPVTYPMPQTPMGCPQPTPKMETPAIRPPPHGTTAPHKN 2020 2030 2040 2050 2060 2070 160 170 180 190 200 210 FLJ003 ASGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDL KIAA06 SASVQNSSVAVLSVNHIKRPHSVPSSVQLPSTLSTQSACQNSVHPANKPIAPNFSAPLPF 2080 2090 2100 2110 2120 2130 >>FLJ00403 ( 225 res) sj07657 (225 aa) initn: 90 init1: 64 opt: 97 Z-score: 88.6 bits: 24.1 E(): 9.7 Smith-Waterman score: 108; 25.767% identity (47.239% similar) in 163 aa overlap (1-159:43-176) 10 20 30 FLJ003 SQRGKGTCPGSHRNHASSLPSHGLVSIQGI ::. : .. . .. . ...::.... FLJ004 FHAVSFFHPGASSKAVSLMGTSTLDFVACDSQERAGLSDSATLSGVDLMKTEALVTVKAN 20 30 40 50 60 70 40 50 60 70 80 90 FLJ003 SAPAGQWPAPPPWSQEGMQCHRDLALSQALWGWQLSKQSGWAHPSLPHSPLPSTVHSCSW :. :: . .: : . :: : . :: : .:::. . FLJ004 SSHAG--------NVNGRGCGTES-------GWAALKGALWA----PAGPLPGPL----- 80 90 100 100 110 120 130 140 FLJ003 APPHLQRHLPLATVSPGTTQLTQGPAGRTLGQTQASCPE----PRPSMDAVDATMEKLRA ::: : . : : ::.: .. :.: . . :. : : . .: :. . FLJ004 APPLSQLQRPRLGVPPGATVSSRPPTGLLFPDDVATLSPGSWLPCPRCEHPTST-ERWGG 110 120 130 140 150 160 150 160 170 180 190 200 FLJ003 QCLSRGASGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNG :: :: : .:: FLJ004 QC---GA-GTRGLDLYPQAPICSFADPDPFVCVIWGHFGGIFGRCGPGWVCARDAGCWCH 170 180 190 200 210 220 322 residues in 1 query sequences 2210672 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:02:39 2009 done: Fri Feb 27 11:02:39 2009 Total Scan time: 0.460 Total Display time: 0.090 Function used was FASTA [version 34.26.5 April 26, 2007]