hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/shimazu/full/sj/sj04630/interpro/cnk_1/seq.in
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Query:  sj04630  322

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
EFh      EF-hand, calcium binding motif                  52.4    5.9e-11   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
EFh        1/3     158   186 ..     1    29 []    21.3     0.14
EFh        2/3     194   222 ..     1    29 []    20.1     0.32
EFh        3/3     230   258 ..     1    29 []    11.0      6.8

Alignments of top-scoring domains:
EFh: domain 1 of 3, from 158 to 186: score 21.3, E = 0.14
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                       l + Fr +D+Dg+  +d +Ef+++l++l   
     sj04630   158    GLARFFRQLDRDGSRSLDADEFRQGLAKL    186  

EFh: domain 2 of 3, from 194 to 222: score 20.1, E = 0.32
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                      e + + r+ D++g+G++d+eEf+++l+     
     sj04630   194    EAEGVCRKWDRNGSGTLDLEEFLRALRPP    222  

EFh: domain 3 of 3, from 230 to 258: score 11.0, E = 6.8
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                       + +aF+++D+ gdG ++ ++++ + +     
     sj04630   230    VIAAAFAKLDRSGDGVVTVDDLRGVYSGR    258  

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