hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/shimazu/full/sj/sj04630/interpro/cnk_1/seq.in
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Query:  sj04630  322

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
efhand   EF hand                                         62.5    8.9e-15   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
efhand     1/3     158   186 ..     1    29 []    26.2  0.00075
efhand     2/3     194   222 ..     1    29 []    18.1     0.21
efhand     3/3     230   258 ..     1    29 []    18.1     0.21

Alignments of top-scoring domains:
efhand: domain 1 of 3, from 158 to 186: score 26.2, E = 0.00075
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                       l ++F+++D+Dg+  ++ +Ef+++l+kl   
     sj04630   158    GLARFFRQLDRDGSRSLDADEFRQGLAKL    186  

efhand: domain 2 of 3, from 194 to 222: score 18.1, E = 0.21
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                      e++ + ++ D++g+G++++eEf++al+     
     sj04630   194    EAEGVCRKWDRNGSGTLDLEEFLRALRPP    222  

efhand: domain 3 of 3, from 230 to 258: score 18.1, E = 0.21
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                       + +aF+++D+ gDG +++++++ + +     
     sj04630   230    VIAAAFAKLDRSGDGVVTVDDLRGVYSGR    258  

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