# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj04320.fasta.huge -Q ../query/FLJ00334.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00334, 645 aa vs ./tmplib.10216 library 2210349 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 5.1419+/-0.00459; mu= 16.2058+/- 0.309 mean_var=119.5174+/-26.276, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.117316 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1439 ( 561 res) hg01641b ( 561) 98 27.6 4.3 KIAA1681 ( 1236 res) fh23697 (1236) 102 28.8 4.3 KIAA1471 ( 1421 res) fj02383s1 (1421) 102 28.8 4.7 KIAA0029 ( 974 res) ha00566 ( 974) 100 28.3 4.7 KIAA1045 ( 427 res) hh00656 ( 427) 93 26.6 6.5 FLJ00353 ( 1766 res) sh01144 (1766) 98 28.3 8.5 KIAA1224 ( 997 res) fh02652 ( 997) 95 27.5 8.6 KIAA1902 ( 1112 res) hj04383 (1112) 95 27.5 9.2 KIAA0542 ( 1212 res) hg04325s1 (1212) 94 27.4 11 KIAA1492 ( 792 res) bj00389 ( 792) 91 26.6 12 FLJ00067 ( 574 res) as00067 ( 574) 88 26.0 14 FLJ00070 ( 1382 res) as00070 (1382) 92 27.1 15 FLJ00159 ( 567 res) sh06608 ( 567) 87 25.8 16 KIAA0495 ( 209 res) hg00106 ( 209) 81 24.2 17 KIAA0298 ( 901 res) hf00341(revised) ( 901) 88 26.2 18 KIAA1249 ( 949 res) hh04184 ( 949) 88 26.2 19 FLJ00080 ( 716 res) as00080 ( 716) 86 25.7 20 KIAA0269 ( 567 res) ha06751 ( 567) 84 25.3 22 KIAA1690 ( 482 res) fh27434 ( 482) 83 25.0 23 KIAA0782 ( 1281 res) hk05405s1 (1281) 88 26.4 23 FLJ00352 ( 289 res) sh00608 ( 289) 80 24.2 24 FLJ00011 ( 394 res) as00011 ( 394) 81 24.6 25 KIAA0989 ( 859 res) hk05377 ( 859) 85 25.7 25 KIAA0522 ( 1555 res) hg01393 (1555) 88 26.5 25 KIAA0820 ( 892 res) bg00036 ( 892) 85 25.7 26 KIAA0383 ( 1781 res) hh00708s1 (1781) 88 26.6 28 KIAA1971 ( 830 res) fk08985 ( 830) 84 25.5 28 KIAA0547 ( 696 res) hh00544 ( 696) 83 25.2 28 KIAA1292 ( 595 res) hk05468(revised) ( 595) 82 25.0 29 KIAA1862 ( 1070 res) aj00563 (1070) 85 25.8 29 KIAA1733 ( 509 res) ph00321 ( 509) 81 24.7 29 KIAA0936 ( 640 res) hh04647 ( 640) 82 25.0 30 KIAA0970 ( 1151 res) hh13674 (1151) 85 25.8 30 KIAA1610 ( 484 res) fj11544 ( 484) 80 24.5 32 KIAA1865 ( 723 res) fj14303 ( 723) 82 25.1 32 KIAA1688 ( 1094 res) fh26207 (1094) 84 25.6 33 KIAA0508 ( 253 res) hh00207 ( 253) 76 23.5 35 KIAA0458 ( 1552 res) ef01252 (1552) 85 26.0 36 KIAA0807 ( 1329 res) hk04449(revised) (1329) 84 25.8 37 KIAA1818 ( 1157 res) hg00622 (1157) 83 25.5 38 KIAA1809 ( 800 res) fk01629 ( 800) 81 25.0 39 KIAA1482 ( 818 res) fj06205 ( 818) 81 25.0 39 KIAA0843 ( 691 res) hk05155 ( 691) 80 24.7 40 FLJ00079 ( 84 res) as00079 ( 84) 69 21.6 40 KIAA0666 ( 1085 res) hk02075 (1085) 82 25.3 41 KIAA0900 ( 503 res) hk09606s1 ( 503) 78 24.2 41 KIAA0476 ( 1626 res) ah04654 (1626) 84 25.9 42 KIAA1662 ( 1653 res) fj03879s1 (1653) 84 25.9 42 KIAA1932 ( 795 res) fj14525 ( 795) 80 24.8 43 KIAA1052 ( 1456 res) hh04964 (1456) 83 25.6 44 >>KIAA1439 ( 561 res) hg01641b (561 aa) initn: 64 init1: 64 opt: 98 Z-score: 95.0 bits: 27.6 E(): 4.3 Smith-Waterman score: 98; 27.419% identity (47.581% similar) in 124 aa overlap (532-641:389-503) 510 520 530 540 550 560 FLJ003 SYEAAGEIVRLTTPGFSHSCSMSQNFDMFVSHYSSVSTP-PWVHVYKLSGPDDDPLHKQP :. ::..: : ..:: .: : : KIAA14 SSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASP-HATP 360 370 380 390 400 410 570 580 590 600 610 FLJ003 RFWASMMEAASCP------PDYVPPEIFHFHTRSDVRLYGMIYKPHALQPGKKHPTVLFV : .. . : : . : : ..: . .. . .. : : :.. : :. KIAA14 ----STLHFPTSPIIQQPGPYFSHPAI-RYHPQETLKEFVQLVCPDA---GQQAGQVGFL 420 430 440 450 460 620 630 640 FLJ003 Y--GGPQVSAH--LLPRP---PPHHPPEDSPSPLKCQL :. : ..: .:: : :: :: : :: KIAA14 NPNGSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYST 470 480 490 500 510 520 KIAA14 PSTSPANRFVSVGPRDPSFVNIPQQTQSWYLG 530 540 550 560 >>KIAA1681 ( 1236 res) fh23697 (1236 aa) initn: 231 init1: 74 opt: 102 Z-score: 95.0 bits: 28.8 E(): 4.3 Smith-Waterman score: 102; 32.727% identity (54.545% similar) in 55 aa overlap (588-640:577-630) 560 570 580 590 600 610 FLJ003 KQPRFWASMMEAASCPPDYVPPEIFHFHTRSDVRLYGMIYKPHA--LQPGKKHPTVLFVY : .:. .: .:.. . : . .: .. : KIAA16 TQPAGHVRSQSIVSSVFSEAWKRGTQLEESSKARMESM-NRPYTSLVPPLSPQPKIVTPY 550 560 570 580 590 600 620 630 640 FLJ003 GGPQVSAHLLPRPPPHHPPEDSPSPLKCQL . : : : : ::: :: : : KIAA16 TASQPSPPLPPPPPPPPPPPPPPPPPPPPLPSQSAPSAGSAAPMFVKYSTITRLQNASQH 610 620 630 640 650 660 >>KIAA1471 ( 1421 res) fj02383s1 (1421 aa) initn: 103 init1: 60 opt: 102 Z-score: 94.3 bits: 28.8 E(): 4.7 Smith-Waterman score: 102; 26.415% identity (49.057% similar) in 106 aa overlap (540-640:1049-1146) 510 520 530 540 550 560 FLJ003 VRLTTPGFSHSCSMSQNFDMFVSHYSSVSTPPWVHVYKLSGPDDDPLHKQPRFWASMMEA :: .:. :: .::: : ... KIAA14 PHLFPPQAPGLLPPQSPYPYAPQPGVLGQPPPPLHTQLYPGPAQDPL---PAHSGALPFP 1020 1030 1040 1050 1060 1070 570 580 590 600 610 620 FLJ003 ASCPPDYVPPEI-FHFHTRSDVRLYGMIYKPHALQ-P---GKKHPTVLFVYGGPQVSAHL . ::. ::. . . ..: .: : ... : :.. :. .: :. . KIAA14 SPGPPQ--PPHPPLAYGPAPSTRPMGPQAAPLTIRGPSSAGQSTPSPHLV---PSPAPSP 1080 1090 1100 1110 1120 1130 630 640 FLJ003 LPRPPPHHPPEDSPSPLKCQL : : : .:: : : KIAA14 GPGPVPPRPPAAEPPPCLRRGAAAADLLSSSPESQHGGTQSPGGGQPLLQPTKVDAAEGR 1140 1150 1160 1170 1180 1190 >>KIAA0029 ( 974 res) ha00566 (974 aa) initn: 231 init1: 86 opt: 100 Z-score: 94.3 bits: 28.3 E(): 4.7 Smith-Waterman score: 112; 26.531% identity (50.000% similar) in 98 aa overlap (553-640:380-475) 530 540 550 560 570 580 FLJ003 MSQNFDMFVSHYSSVSTPPWVHVYKLSGPDDDPLHKQPRFWASMMEAASCPPDYVPPE-- . :. .:: :.. . :: .::. KIAA00 GDSSGSSKSIGRLSKTGQPFINPDGSPVVYNPPMTQQPV--RSQVPGPPQPPLPAPPQQP 350 360 370 380 390 400 590 600 610 620 630 FLJ003 -IFHFHTRSDVRLYGMIYKPHALQP---GKKHPTVLF----VYGGPQVSAHLLPRPPPHH :. ...: . . : :: :. ...: : .:: :.... :: : KIAA00 AANHIFSQQDNLGSQFSHMSLARQPSADGSDPHAAMFQSTVVLQSPQQSGYIMTAAPPPH 410 420 430 440 450 460 640 FLJ003 PPEDSPSPLKCQL :: : : KIAA00 PPPPPPPPPPPPPLPPGQPVPTAGYPASGHPVSQPVLQQQGYIQQPSPQMPACYCAPGHY 470 480 490 500 510 520 >>KIAA1045 ( 427 res) hh00656 (427 aa) initn: 43 init1: 43 opt: 93 Z-score: 91.8 bits: 26.6 E(): 6.5 Smith-Waterman score: 93; 24.490% identity (55.102% similar) in 98 aa overlap (298-391:76-166) 270 280 290 300 310 320 FLJ003 ERKTDSYRYPRTGSKNPKIALKLAEFQTDSQGKIVSTQEKELVQPFSSLFPKVEYIARAG .:.. .::.. .. .:. . .::. KIAA10 LAVSAFKDGLRDRPSIRRTGELPGSRRGTVEGSVQEVQEEKEAEAGTSVVQEESSAGRAA 50 60 70 80 90 100 330 340 350 360 370 380 FLJ003 WTR--DGKYAWAMFLDRPQQWLQLVLLPPALFIPSTENEEQRLASARAVPRNVQPYVVYE : : ::. . .:: ... :::.. :. . .... :: .: : : KIAA10 WERLRDGRGVEPEEFDRTSRFT-----PPAFIRPTRKLDDDKPPEICLEPR--EPVVNDE 110 120 130 140 150 390 400 410 420 430 440 FLJ003 --EVTNVWINVHDIFYPFPQSEGEDELCFLRANECKTGFCHLYKVTAVLKSQGYDWSEPF .: .:: KIAA10 MCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNI 160 170 180 190 200 210 >>FLJ00353 ( 1766 res) sh01144 (1766 aa) initn: 95 init1: 69 opt: 98 Z-score: 89.7 bits: 28.3 E(): 8.5 Smith-Waterman score: 98; 27.174% identity (51.087% similar) in 92 aa overlap (556-641:1092-1181) 530 540 550 560 570 580 FLJ003 NFDMFVSHYSSVSTPPWVHVYKLSGPDDDPLHKQPRFWASMMEAASCPP--DYVPPEIFH :..: . .: . .: : :..::. . FLJ003 LDSDQGLGGVMVLSQRQHEIILKAAQELKMLREQKEQLQKMKDFGSEPQMADHLPPQESR 1070 1080 1090 1100 1110 1120 590 600 610 620 630 FLJ003 FHTRSDVRLYGMIYKPHALQP----GKKHPTVLFVYGGPQVSAHLLPRPPPHHPPEDSPS ... :. :: : . .: :: ... . : :. . ::: :: : FLJ003 LQNTSSR--PGMYPPPGSYRPPPPMGKPPGSIVRPSAPPARSSVPVTRPPVPIPPPPPPP 1130 1140 1150 1160 1170 640 FLJ003 PLKCQL :: FLJ003 PLPPPPPVIKPQTSAVEQERWDEDSFYGLWDTNDEQGLNSEFKSETAAIPSAPVLPPPPV 1180 1190 1200 1210 1220 1230 >>KIAA1224 ( 997 res) fh02652 (997 aa) initn: 132 init1: 74 opt: 95 Z-score: 89.6 bits: 27.5 E(): 8.6 Smith-Waterman score: 101; 27.885% identity (48.077% similar) in 104 aa overlap (546-638:823-924) 520 530 540 550 560 570 FLJ003 GFSHSCSMSQNFDMFVSHYSSVSTPPWVHVYKLSGPDDDPLHKQPRFWASMMEAASCPPD :. : : : : .: .:: . ::. KIAA12 AALGPGPSPYPLPPPPGGTNSNDYSSQGNNYQGHGNFDFP-HGNPG-GTSMNDFMHGPPQ 800 810 820 830 840 850 580 590 600 610 620 FLJ003 YV-PPEIFHFHTRSDVRLYGMIYK--PHALQPGKKHPTV---LFV-----YGGPQVSAHL ::.. . . . : . . ::: . . ::.. : : .:: . KIAA12 LSHPPDMPNNMAALEKPLSHPMQETMPHAGSSDQPHPSIQQGLHVPHPSSQSGPPLHHSG 860 870 880 890 900 910 630 640 FLJ003 LPRPPPHHPPEDSPSPLKCQL : ::: .::.. : KIAA12 APPPPPSQPPRQPPQAAPSSHPHSDLTFNPSSALEGQAGAQGASDMPEPSLDLLPELTNP 920 930 940 950 960 970 >>KIAA1902 ( 1112 res) hj04383 (1112 aa) initn: 267 init1: 74 opt: 95 Z-score: 89.1 bits: 27.5 E(): 9.2 Smith-Waterman score: 95; 38.095% identity (52.381% similar) in 42 aa overlap (599-640:549-587) 570 580 590 600 610 620 FLJ003 AASCPPDYVPPEIFHFHTRSDVRLYGMIYKPHALQPGKKHPTVLFVYGGPQVSAHLLPRP : : :.. : . : .:: :. . : : KIAA19 GTLSMGSEVVAGNSVGPTMGAASSGPLPPPPPPLPPSSDTPET--VQNGP-VTPPMPPPP 520 530 540 550 560 570 630 640 FLJ003 PPHHPPEDSPSPLKCQL :: :: : : KIAA19 PPPPPPPPPPPPPPPPPPLPGPASETVPAPPLAPPLPSAPPLPGTSSPTVVFNSGLAAVK 580 590 600 610 620 630 >>KIAA0542 ( 1212 res) hg04325s1 (1212 aa) initn: 142 init1: 86 opt: 94 Z-score: 87.8 bits: 27.4 E(): 11 Smith-Waterman score: 94; 39.394% identity (66.667% similar) in 33 aa overlap (348-380:1051-1083) 320 330 340 350 360 370 FLJ003 PKVEYIARAGWTRDGKYAWAMFLDRPQQWLQLVLLPPALFIPSTENEEQRLASARAVPRN .:.::::. :.: :... ::.::. KIAA05 PTALVPHSPLPGALSSAPGPKQPPTASTGPELLLLPPSSFMPCGAAAPARVSAQRATPRD 1030 1040 1050 1060 1070 1080 380 390 400 410 420 430 FLJ003 VQPYVVYEEVTNVWINVHDIFYPFPQSEGEDELCFLRANECKTGFCHLYKVTAVLKSQGY : KIAA05 KPPVPSSLASVPDPHLLLPGDFSATRAGPGLSTAGSLDLEAELEEIQQQLLHYQTTKQNL 1090 1100 1110 1120 1130 1140 >>KIAA1492 ( 792 res) bj00389 (792 aa) initn: 88 init1: 51 opt: 91 Z-score: 87.0 bits: 26.6 E(): 12 Smith-Waterman score: 163; 22.410% identity (50.361% similar) in 415 aa overlap (211-618:221-567) 190 200 210 220 230 FLJ003 WVANIETGEERRLTFCHQGLSNVLDDPKSAGVATFVIQEEF-DRFTGYWWCPTASWEGSE :.: .. .::. ..:: : .: KIAA14 IFENNIYYQPDIKSSSLRLTSSGKEEIIFNGIADWLYEEELLHSHIAHWWSP----DGE- 200 210 220 230 240 240 250 260 270 280 290 FLJ003 GLKTLRILYEEVDESEVEVIHVP--SPALEERKTDSYRYPRTGSKNPKIALKLAEFQTDS :. . ...: : .. .: . :: : .: ::..:. :: : : . .. KIAA14 -----RLAFLMINDSLVPTMVIPRFTGALYP-KGKQYPYPKAGQVNPTIKL----YVVNL 250 260 270 280 290 300 310 320 330 340 350 FLJ003 QGKIVSTQEKELVQPFSSLFPKVEYIARAGWTRDGKYAWAMFLDRPQQWLQLVLLPPALF : :. ::. : .:. . ::. . :. . : . . .:.:::. . .: KIAA14 YG---PTHTLELMPP-DSFKSREYYITMVKWVSNTKTV-VRWLNRPQN---ISIL----- 300 310 320 330 340 360 370 380 390 400 410 FLJ003 IPSTENEEQRLASARAVPRNVQPYVVYEEVTNVWINVHDIFYPFPQSEGEDELCFLRANE : : : .. :: ....:.. .. : . .: . . ... KIAA14 ---TVCETTTGACSKK----------YEMTSDTWLSQQN-EEPVFSRDGSKFFMTVPVKQ 350 360 370 380 420 430 440 450 460 470 FLJ003 CKTGFCHLYKVTAVLKSQGYDWSEPFSPGEDEFKCPIKEEIALTSGEWEVLARHGSKIWV : : . . ...:. :: .. ... ::::.:::. :: . KIAA14 GGRGEFH-HIAMFLIQSK----SEQIT---------VRH---LTSGNWEVI-----KILA 390 400 410 420 480 490 500 510 520 530 FLJ003 -NEETKLVYFQGTKDTPLEHHLYVVSYEAAGEIVR--LTTPGFSHSCSM-SQNFDMFVSH .: :. .:: .:...: ..:: .: : : . : .. ....:.. . .:. . .: KIAA14 YDETTQKIYFLSTESSPRGRQLYSASTE--GLLNRQCISCNFMKEQCTYFDASFSPMNQH 430 440 450 460 470 480 540 550 560 570 580 590 FLJ003 YSSVSTPPWVHVYKLSGPDDDPLHKQPRFWASMMEAASCPPDYVPPEIFHFHTRSDVRLY . : : : .: . :. : . ::.. : ::: .: .: .: KIAA14 FLLFCEGPRVPVVSLHSTDN-PAKYFILESNSMLKEAILKKKIGKPEIKILHI-DDYELP 490 500 510 520 530 540 600 610 620 630 640 FLJ003 GMIYKPHALQPGKKHPTVLFVYGGPQVSAHLLPRPPPHHPPEDSPSPLKCQL .. :. .. ... .:.. : KIAA14 LQLSLPKDFMDRNQYALLLIMDEEPGGQLVTDKFHIDWDSVLIDMDNVIVARFDGRGSGF 550 560 570 580 590 600 645 residues in 1 query sequences 2210349 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:51:55 2009 done: Fri Feb 27 10:51:55 2009 Total Scan time: 0.630 Total Display time: 0.140 Function used was FASTA [version 34.26.5 April 26, 2007]