hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/shimazu/full/sj/sj04110/interpro/cnk_1/seq.in
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Query:  sj04110  705

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C1Q      Complement component C1q domain.               274.2      1e-77   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C1Q        1/1     570   705 .]     1   146 []   274.2    1e-77

Alignments of top-scoring domains:
C1Q: domain 1 of 1, from 570 to 705: score 274.2, E = 1e-77
                   *->eykakprsAFsvilsyterpPpEmNpgqpirFdkvLyNqqghYdpsT
                      e +a++++AF++ l+   ++P+    g+p++Fd+ LyN+++ Y+p+T
     sj04110   570    ELSAHATPAFTAVLT--SPFPA---SGMPVKFDRTLYNGHSGYNPAT 611  

                   GkFtCpvPGvYyFsYhievkgrRqnvkvsLmkngiqvlrvvstydeyqkg
                   G+FtCpv GvYyF+Yh++vkg+  nv+v+L+kn++++++   tydey+kg
     sj04110   612 GIFTCPVGGVYYFAYHVHVKGT--NVWVALYKNNVPATY---TYDEYKKG 656  

                   lydvaSGgalLqLeqGDqVWLelddeeknglyageevdSvFSGFLLfpd<
                   ++d+aSGga+LqL+++DqVW++++++++ngly++e+ +S+FSGFLL+p+ 
     sj04110   657 YLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLLCPT  705  

                   -*
                     
     sj04110     -    -    

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