hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/shimazu/full/sj/sj04085/interpro/cnk_1/seq.in
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Query:  sj04085  1110

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGAP   GTPase-activator protein for Rho-like GTPase   222.2    4.7e-62   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGAP     1/1      40   221 ..     1   193 []   222.2  4.7e-62

Alignments of top-scoring domains:
RhoGAP: domain 1 of 1, from 40 to 221: score 222.2, E = 4.7e-62
                   *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged.
                      +++P+++ +C e++e++G    GIYR+sG++s +++Lr++f+s  ++
     sj04085    40    QEVPQVLKSCAEFVEEYGVVD-GIYRLSGVSSNIQKLRQEFESERKp 85   

                   dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie
                   dl            d+  +d+h v++l K y+ReLP+PLlt++ly++f e
     sj04085    86 DLRR----------DVYLQDIHCVSSLCKAYFRELPDPLLTYRLYDKFAE 125  

                   aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL
                   a  +              + e erl +++e+l++LP +n++tL++L++HL
     sj04085   126 AVGV--------------QLEPERLVKILEVLRELPVPNYRTLEFLMrHL 161  

                   nrVaehsevNkMtarNLAivFgPtLlrpp............ltdikhqnk
                    + a +s+++ M arNLAiv++P+Llr+++ + ++ +++   ++ ++q++
     sj04085   162 VHMASFSAQTNMHARNLAIVWAPNLLRSKdieasgfngtaaFMEVRVQSI 211  

                   vvetlienad<-*
                   vve++++++d   
     sj04085   212 VVEFILTHVD    221  

//