hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/shimazu/full/sj/sj04085/interpro/cnk_1/seq.in
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Query:  sj04085  1110

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGAP   RhoGAP domain                                  206.6    3.7e-58   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGAP     1/1      43   196 ..     1   159 []   206.6  3.7e-58

Alignments of top-scoring domains:
RhoGAP: domain 1 of 1, from 43 to 196: score 206.6, E = 3.7e-58
                   *->PlivekCieyiekrGLdtEGIyRvsGsksrikeLreafdrgedvdl.
                      P+++ +C e++e++G  ++GIyR+sG +s i++Lr++f+++  +dl+
     sj04085    43    PQVLKSCAEFVEEYG-VVDGIYRLSGVSSNIQKLRQEFESERKPDLr 88   

                   ndleeedvhvvAslLKlFLReLPePLltfelyeefieaaaesedeeerle
                    d   +d+h v+sl K ++ReLP+PLlt++ly++f e a+ ++ e erl 
     sj04085    89 RDVYLQDIHCVSSLCKAYFRELPDPLLTYRLYDKFAE-AVGVQLEPERLV 137  

                   alrellrlLPpaNrdtLryLlrHLnrVaqhseveggvNkMtahNLAivFg
                   ++ e+lr LP +N++tL++L+rHL + a++s++    + M a+NLAiv++
     sj04085   138 KILEVLRELPVPNYRTLEFLMRHLVHMASFSAQ----TNMHARNLAIVWA 183  

                   PtLlrppdgdsad<-*
                   P+Llr++d + +    
     sj04085   184 PNLLRSKDIEASG    196  

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