# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj03574.fasta.huge -Q ../query/FLJ00199.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00199, 383 aa vs ./tmplib.10216 library 2210611 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.9008+/-0.0049; mu= 17.3302+/- 0.330 mean_var=147.1744+/-31.962, 0's: 0 Z-trim: 4 B-trim: 8 in 1/39 Lambda= 0.105720 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0500 ( 213 res) hg00404 ( 213) 135 31.1 0.088 KIAA0364 ( 1437 res) hh00116 (1437) 136 32.6 0.21 KIAA1651 ( 91 res) fj00563 ( 91) 119 28.1 0.31 KIAA1883 ( 1480 res) fh02249 (1480) 128 31.4 0.5 FLJ00047 ( 81 res) as00047 ( 81) 109 26.5 0.83 FLJ00399 ( 165 res) sj06869 ( 165) 108 26.8 1.3 FLJ00268 ( 695 res) sj05723 ( 695) 113 28.6 1.7 KIAA0705 ( 1483 res) hg03359s1 (1483) 111 28.8 3 KIAA0377 ( 1412 res) hh00412 (1412) 107 28.1 4.5 KIAA0254 ( 1009 res) ha07011 (1009) 103 27.3 5.8 KIAA1453 ( 1123 res) fh14729 (1123) 101 27.1 7.6 FLJ00184 ( 580 res) sj01836 ( 580) 95 25.7 10 FLJ00315 ( 925 res) sh06842 ( 925) 95 26.0 13 KIAA0312 ( 3192 res) ff01724 (3192) 101 27.8 13 KIAA0712 ( 1770 res) hg04169 (1770) 98 26.9 13 KIAA1602 ( 1003 res) fj10252 (1003) 95 26.1 13 KIAA1311 ( 889 res) fh11512 ( 889) 94 25.8 14 KIAA0035 ( 707 res) ha01976 ( 707) 92 25.4 15 KIAA1234 ( 727 res) fh08618 ( 727) 92 25.4 16 KIAA2031 ( 515 res) ef03841 ( 515) 90 24.8 16 FLJ00342 ( 233 res) sf00009 ( 233) 86 23.7 16 KIAA1893 ( 800 res) fk04261 ( 800) 92 25.4 16 KIAA0669 ( 825 res) hk02346 ( 825) 91 25.3 19 KIAA0897 ( 419 res) hk09524 ( 419) 87 24.2 20 KIAA0324 ( 2800 res) ee08846s1 (2800) 96 26.9 21 KIAA0797 ( 1126 res) hk06406s1 (1126) 91 25.5 22 KIAA1887 ( 967 res) fk02232 ( 967) 90 25.3 22 KIAA0226 ( 973 res) fg02838 ( 973) 90 25.3 22 KIAA0584 ( 738 res) hj00933 ( 738) 88 24.8 24 KIAA0047 ( 268 res) ha01551 ( 268) 83 23.3 24 KIAA1481 ( 1380 res) fj05724 (1380) 91 25.7 24 FLJ00169 ( 432 res) sh07709 ( 432) 85 24.0 25 KIAA1986 ( 334 res) pg00636 ( 334) 83 23.5 27 KIAA1135 ( 789 res) hj05037 ( 789) 87 24.7 28 KIAA0333 ( 1223 res) pf04993 (1223) 89 25.3 28 KIAA1075 ( 1505 res) hj06716s1 (1505) 90 25.6 28 KIAA1389 ( 1514 res) hh03860 (1514) 90 25.6 28 KIAA0332 ( 1028 res) hg00939 (1028) 88 25.0 28 KIAA0865 ( 1900 res) hk06640y1 (1900) 91 25.9 28 KIAA0881 ( 1064 res) hk07534 (1064) 88 25.0 29 KIAA0330 ( 2224 res) hg00894s1 (2224) 91 26.0 31 FLJ00277 ( 357 res) sh01540 ( 357) 82 23.4 31 KIAA1935 ( 441 res) fk03135(revised) ( 441) 83 23.7 31 KIAA0867 ( 568 res) hk06783 ( 568) 84 24.0 32 KIAA1190 ( 174 res) hg03443a ( 174) 78 22.3 33 KIAA1758 ( 1662 res) fh20539(revised) (1662) 89 25.5 33 FLJ00109 ( 332 res) as00109 ( 332) 81 23.2 33 KIAA0893 ( 974 res) hk08702 ( 974) 86 24.7 34 KIAA1172 ( 929 res) hj03919(revised) ( 929) 85 24.5 37 KIAA1297 ( 2242 res) fg03883 (2242) 89 25.7 38 >>KIAA0500 ( 213 res) hg00404 (213 aa) initn: 131 init1: 131 opt: 135 Z-score: 125.3 bits: 31.1 E(): 0.088 Smith-Waterman score: 135; 53.333% identity (77.778% similar) in 45 aa overlap (293-337:127-165) 270 280 290 300 310 320 FLJ001 SGSTPMPRDGLRNPETASEPLSETESHSVARLECSGAISAQCNLRFLGSRDSPASASQVA ::: ::.:.:.:.:..::: . :::::.:: KIAA05 ADTCIFGLHVSTCPLHSDFFFKRQHLTLSPRLEYSGVITAHCSLKLLGSGNPPASASRVA 100 110 120 130 140 150 330 340 350 360 370 380 FLJ001 GITARVTAEGVCREAGVPAAPCLPPAGGVRLHLPRRQHAARPREDPHAAPDRGLAAAAGG : : :.:..: KIAA05 GST------GACHHAHLIFLSFIDTGLTVAQAGLELLASGDPPALAYQNAGIIGMNHCAW 160 170 180 190 200 210 >>KIAA0364 ( 1437 res) hh00116 (1437 aa) initn: 116 init1: 116 opt: 136 Z-score: 118.4 bits: 32.6 E(): 0.21 Smith-Waterman score: 136; 34.694% identity (60.204% similar) in 98 aa overlap (280-375:20-109) 250 260 270 280 290 300 FLJ001 KWEQALSVGQRGDSGSTPMPRDGLRNPETASEPLSETESHSVA-RLECSGAISAQCNLRF ..: :: :.. ::::.::::..:.. . KIAA03 RRSLLFSQSPEKFQISSFYTHPGEGKESLSLSPRLECTGAISTHCSFSL 10 20 30 40 310 320 330 340 350 360 FLJ001 LGSRDSPASA-SQVAGITARVTAEGVCREAGVPAAPCLPPAGGVRLHLPRRQHAARPRED ::: : ::: :. :. ... . : ... :. :: :: ::. ... KIAA03 LGSSDPPASQPSEWLGLQFAASGGAHWRISNIGAGLQLPSH-----HLLRRKIL---QDS 50 60 70 80 90 100 370 380 FLJ001 PHAAPDRGLAAAAGGR :.: :: KIAA03 EHTASTRGPMTLDRPGEGATMLKTFTVLLFCILMDPQPELWIESNYPQAPWENITLWCRS 110 120 130 140 150 160 >>KIAA1651 ( 91 res) fj00563 (91 aa) initn: 112 init1: 112 opt: 119 Z-score: 115.6 bits: 28.1 E(): 0.31 Smith-Waterman score: 119; 67.857% identity (85.714% similar) in 28 aa overlap (298-325:2-29) 270 280 290 300 310 320 FLJ001 MPRDGLRNPETASEPLSETESHSVARLECSGAISAQCNLRFLGSRDSPASASQVAGITAR : ::..:::.. :: :::.::::::: : KIAA16 GGMISVHCNLHLPGSSDSPVSASQVAGTTGA 10 20 30 330 340 350 360 370 380 FLJ001 VTAEGVCREAGVPAAPCLPPAGGVRLHLPRRQHAARPREDPHAAPDRGLAAAAGGR KIAA16 YHDAWIIFVILVQSEFHLVVQAGLELLTSGDPPTMASQSAGITGISHRTQPDIALLDFEH 40 50 60 70 80 90 >>KIAA1883 ( 1480 res) fh02249 (1480 aa) initn: 117 init1: 65 opt: 128 Z-score: 111.7 bits: 31.4 E(): 0.5 Smith-Waterman score: 128; 23.043% identity (49.130% similar) in 230 aa overlap (161-383:991-1204) 140 150 160 170 180 190 FLJ001 RKKQVGPEMGGEQLGTVPLPILLARKVPSVKKGYSSRRVQSPSSKSNDTLSGISSIEPSK .:. . ...:: . . ..: . :.. KIAA18 EKAAENGALGSPEREEKVLENGELTPPRREEKALENGELRSPEAGEKVLVNG-GLTPPKS 970 980 990 1000 1010 200 210 220 230 240 250 FLJ001 HSGSSHSVASMMAVNSSSPTAACSGLWDARGMEESLTTSDGNAESLYMQGMELFEEALQK .. :.. . . :. : .: : : : :. : : : .. : : .:.. KIAA18 EDKVSENGGLRFPRNTERPPE--TGPWRAPGPWEKTPESWGPAPTI---GEPAPETSLER 1020 1030 1040 1050 1060 1070 260 270 280 290 300 FLJ001 WEQALSVGQRGDSGST------PMPRDGLRNPETASEPLSETESHSVARLECSGAISAQC .: . ..: : : :..: .: : . :. .. : .: .. KIAA18 APAPSAVVSSRNGGETAPGPLGPAPKNGTLEPGTERRA---PETGGAPRAPGAGRLDLGS 1080 1090 1100 1110 1120 1130 310 320 330 340 350 360 FLJ001 NLRF-LGSRDSPASASQVAGITARVTAEGVCREAGVPAAPCLPPAGGVRLHLPRRQHAAR . : .:. .:... .:. :.. : : : ::: .. ::: . : KIAA18 GGRAPVGTGTAPGGGPG-SGVDAKAGWVDNTRPQ--PPPPPLPPPPEAQ---PRRLEPAP 1140 1150 1160 1170 1180 370 380 FLJ001 PREDPHAAPDRGLAAAAGGR :: :..::. : .: .: KIAA18 PRARPEVAPE-GEPGAPDSRAGGDTALSGDGDPPKPERKGPEMPRLFLDLGPPQGNSEQI 1190 1200 1210 1220 1230 1240 >>FLJ00047 ( 81 res) as00047 (81 aa) initn: 132 init1: 109 opt: 109 Z-score: 107.8 bits: 26.5 E(): 0.83 Smith-Waterman score: 109; 72.727% identity (90.909% similar) in 22 aa overlap (293-314:54-75) 270 280 290 300 310 320 FLJ001 SGSTPMPRDGLRNPETASEPLSETESHSVARLECSGAISAQCNLRFLGSRDSPASASQVA ::::::.: :.::::.::: .: FLJ000 FFSFFFFGLFFFFLFVCLFCFLRWSLTLSPRLECSGTILAHCNLRLLGSSNSLPQPPK 30 40 50 60 70 80 330 340 350 360 370 380 FLJ001 GITARVTAEGVCREAGVPAAPCLPPAGGVRLHLPRRQHAARPREDPHAAPDRGLAAAAGG >>FLJ00399 ( 165 res) sj06869 (165 aa) initn: 169 init1: 81 opt: 108 Z-score: 104.1 bits: 26.8 E(): 1.3 Smith-Waterman score: 108; 39.474% identity (60.526% similar) in 76 aa overlap (256-325:81-151) 230 240 250 260 270 280 FLJ001 LTTSDGNAESLYMQGMELFEEALQKWEQALSVGQRGDSGSTPMPRDGLRN-PETASEPLS ..:.:: . :.:::. :. .: :: FLJ003 KLLEPFLTPRAATLKAESRPGMAAHACNPSTLGRRGGR----ITRSGLRDQPDQHDETLS 60 70 80 90 100 290 300 310 320 330 FLJ001 ETESHSVAR-----LECSGAISAQCNLRFLGSRDSPASASQVAGITARVTAEGVCREAGV . ...:: :: : . . .:::: ::::::.::: : FLJ003 LLKIQKLARPGGTRLE-SQLLRRLRQENLLGSRRSPASASRVAGTTGTHHHTQQIFLYFF 110 120 130 140 150 160 340 350 360 370 380 FLJ001 PAAPCLPPAGGVRLHLPRRQHAARPREDPHAAPDRGLAAAAGGR >>FLJ00268 ( 695 res) sj05723 (695 aa) initn: 90 init1: 54 opt: 113 Z-score: 102.4 bits: 28.6 E(): 1.7 Smith-Waterman score: 122; 26.630% identity (53.804% similar) in 184 aa overlap (207-382:221-375) 180 190 200 210 220 230 FLJ001 NDTLSGISSIEPSKHSGSSHSVASMMAVNSSSPTAACSGLWDARGMEESLTTSDGNAESL .. .:.:::: : ..:. . :: .: . FLJ002 WPDAFHCEGTESYLWNCPVSTLGAPACAPGNTASAVCSGLAHALRLREGQSRCDGRVE-V 200 210 220 230 240 240 250 260 270 280 290 FLJ001 YMQGMELFEEALQKWEQALSVGQRGDSGSTPMPRDGLRNPETASE-PLSETESHSVA--R ..:. : ..:. . .... . : :. . : . : : .:: : FLJ002 SLDGV---------WGRVLDDAWDLRGAGVVCRQLGCRGAQQAYDAPAPSRGSVQVALSR 250 260 270 280 290 300 300 310 320 330 340 FLJ001 LECSGAIS--AQCNLRFLGSRDSPASASQVAGI--TARV-TAEGVCREAGVPAAPCLPPA ..: :. . .:::. .. . ::..:. ::. .:.: :: . :. :.: FLJ002 VRCLGTETRLTQCNVS--ATLQEPAGTSRDAGVVCSAEVGTASPMARRHGIP-------- 310 320 330 340 350 350 360 370 380 FLJ001 GGVRLHLPRRQHAARPREDPHAAPDRGLAAAAGGR :.. : : : .:..: :: .: :: FLJ002 GALTLSLHR---------EPQGAAGRGAGALHGGAWGTVCDDAWELRDAHVVCRQLGCGR 360 370 380 390 400 FLJ002 ALSAPGGRTLRSRGRAHLAGRAGLPGPRVCAVAVPVGGLGAARLEAQGGRRRLLLRVGGS 410 420 430 440 450 460 >>KIAA0705 ( 1483 res) hg03359s1 (1483 aa) initn: 82 init1: 55 opt: 111 Z-score: 97.7 bits: 28.8 E(): 3 Smith-Waterman score: 111; 28.767% identity (55.479% similar) in 146 aa overlap (245-381:1319-1460) 220 230 240 250 260 270 FLJ001 GLWDARGMEESLTTSDGNAESLYMQGMELFEEALQKWEQALSVGQRGDSGSTPMPRDGLR :. ..: .. . ::. . . :.. KIAA07 GLAPFSPSHPAPPSDPSHQISPGPTWDIKREHDVRKPKELSACGQKKQRLGEQRERSA-- 1290 1300 1310 1320 1330 1340 280 290 300 310 320 330 FLJ001 NPETASEPLSETESHSVARLECSGAISAQCNLRFLGSRDSPASASQVAGITARVTAEG-- .:. :..: : . .: : .: ... :.. :. :.:....: : .: : KIAA07 SPQRAARPRLEEAPGGQGRPE-AGRPASEARAPGLAAADA-ADAARAGGKEAPRAAAGSE 1350 1360 1370 1380 1390 1400 340 350 360 370 380 FLJ001 VCREAGVPAAPCLP-PAGGVRLHLPRRQHA-AR--PREDPH---AAPDRGLAAAAGGR .::. : ::: . :.:: : . .: :: :: :. .:: : :.: : KIAA07 LCRREGPGAAPAFAGPGGGGSGALEAEGRAGARAGPRPGPRPPGGAPARKAAVAPGPWKV 1410 1420 1430 1440 1450 1460 KIAA07 PGSDKLPSVLKPGASAASR 1470 1480 >>KIAA0377 ( 1412 res) hh00412 (1412 aa) initn: 82 init1: 82 opt: 107 Z-score: 94.6 bits: 28.1 E(): 4.5 Smith-Waterman score: 107; 25.623% identity (49.466% similar) in 281 aa overlap (64-325:870-1137) 40 50 60 70 80 90 FLJ001 DPAGNQLKTFSLEALGPEDFAWGIGPAMAFRRAEGTSMIQALAMTVAEIPVFLYTTFGQS : . : :. : . ...: ..:: :. KIAA03 YFTSESHVHSLLSVFRYGGLLDETQDAQWQRALDYLSAISELNY-MTQIVIMLYEDNTQD 840 850 860 870 880 890 100 110 120 130 140 FLJ001 AFSQ------LRLTPGLRKVLFATALGTVALALAGHQLKRRRRRKKQVGPEMGG-EQL-- .:. :...::.. : :. : :: .. ..... ..:. :.: KIAA03 PLSEERFHVELHFSPGVKGV---EEEGS---APAGCGFRPASSENEEMKTNQGSMENLCP 900 910 920 930 940 950 150 160 170 180 190 FLJ001 GTV---PLPILLARKVPSVKKGYSSRR--VQSPSSKSNDTLSGISSIEPSKHSGSSHSVA : . : : . : : : ... .. : ..:: :: .:. . : : KIAA03 GKASDEPDRALQTSPQPPEGPGLPRRSPLIRNRKAGSMEVLSETSSSRPGGYRLFSSSRP 960 970 980 990 1000 1010 200 210 220 230 240 250 FLJ001 SMMAVNSSSPTAACSGLWDARGMEESLTTSDGNAESLYMQGMELFEEALQKWE--QALSV .:. .:: . .: . :: :: : :.. .. :. :: . KIAA03 PTEMKQSGLGFEGCSMVPTIYPLE-----TLHNALSLR-QVSEFLSRVCQRHTDAQAQAS 1020 1030 1040 1050 1060 260 270 280 290 300 310 FLJ001 GQRGDSGSTPMPRDGLRNPETA--SEPLS-ETESHSVARLECSGAISAQCNLRFLGSRDS . :: . . :. .: . : ::. . .:.. :: .: .:..: : : KIAA03 AALFDSMHSSQASDNPFSPPRTLHSPPLQLQQRSEKPPWLETRFCHVGQAGLELLTSSDL 1070 1080 1090 1100 1110 1120 320 330 340 350 360 370 FLJ001 PASASQVAGITARVTAEGVCREAGVPAAPCLPPAGGVRLHLPRRQHAARPREDPHAAPDR :::::: :::: KIAA03 PASASQSAGITGVSHRTQPDSSGPSSTVSSAGPSSPTTVDGNSQFGFSDQPSLNSHVAEE 1130 1140 1150 1160 1170 1180 >>KIAA0254 ( 1009 res) ha07011 (1009 aa) initn: 55 init1: 55 opt: 103 Z-score: 92.7 bits: 27.3 E(): 5.8 Smith-Waterman score: 103; 26.786% identity (55.357% similar) in 112 aa overlap (262-372:703-808) 240 250 260 270 280 290 FLJ001 NAESLYMQGMELFEEALQKWEQALSVGQRGDSGSTPMPRDGLRNPETASEPLSETESHSV :. .: .::. .:.. .: :::.:..: KIAA02 LALNTDARIAFVKKPFMVSRIDKMVVSAIVDTLKTAFPRS---EPQSPTEELSEAETESK 680 690 700 710 720 300 310 320 330 340 350 FLJ001 ARLECSGAISAQCNLRFLGSRDSPA-SASQVAGITARVTAEGVCREAGVPAAPCLPPAGG . : : ... ::: .:. ::: :.... :: :. . . . KIAA02 PQTE--GKKASKSRLRFSSSKISPALSVTEAQDKILYCLQEGSV-ESETLSMSAMESFIE 730 740 750 760 770 780 360 370 380 FLJ001 VRLHLPRRQHAARPREDPHAAPDRGLAAAAGGR . .: . : . :..::. : KIAA02 KQTKLLEMQPTKAPEKDPEQPPKGRVDSCVSDAAVPAQDPSNSDPGTETELADTALDLLL 790 800 810 820 830 840 383 residues in 1 query sequences 2210611 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:44:30 2009 done: Fri Feb 27 10:44:31 2009 Total Scan time: 0.500 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]