# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sj03430.fasta.nr -Q ../query/FLJ00331.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00331, 113 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7827084 sequences Expectation_n fit: rho(ln(x))= 4.7652+/-0.000178; mu= 7.4592+/- 0.010 mean_var=58.5051+/-11.429, 0's: 40 Z-trim: 42 B-trim: 0 in 0/65 Lambda= 0.167679 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|21748532|dbj|BAC03403.1| FLJ00331 protein [Homo ( 113) 788 197.8 2.8e-49 gi|34527437|dbj|BAC85392.1| unnamed protein produc ( 405) 419 108.9 5.7e-22 gi|189054774|dbj|BAG37596.1| unnamed protein produ ( 336) 410 106.7 2.2e-21 gi|14149102|dbj|BAB55648.1| BPOZ splicing variant ( 336) 410 106.7 2.2e-21 gi|33317158|gb|AAQ04661.1|AF447886_1 Unknown [Homo ( 337) 410 106.7 2.2e-21 gi|14149106|dbj|BAB55650.1| BPOZ splice variant ty ( 453) 410 106.8 2.8e-21 gi|74751721|sp|Q969K4.1|ABTB1_HUMAN RecName: Full= ( 478) 410 106.8 3e-21 gi|114589131|ref|XP_526451.2| PREDICTED: ankyrin r ( 397) 409 106.5 3e-21 gi|109098149|ref|XP_001099270.1| PREDICTED: simila ( 486) 395 103.2 3.7e-20 gi|81889886|sp|Q5XIU1.1|ABTB1_RAT RecName: Full=An ( 478) 362 95.2 9.2e-18 gi|149728219|ref|XP_001487951.1| PREDICTED: ankyri ( 453) 356 93.7 2.4e-17 gi|149728216|ref|XP_001487937.1| PREDICTED: ankyri ( 478) 356 93.8 2.5e-17 gi|14149110|dbj|BAB55652.1| BPOZ [Mus musculus] ( 478) 355 93.5 3e-17 gi|26353444|dbj|BAC40352.1| unnamed protein produc ( 478) 355 93.5 3e-17 gi|81903150|sp|Q99LJ2.1|ABTB1_MOUSE RecName: Full= ( 478) 355 93.5 3e-17 gi|73984937|ref|XP_851631.1| PREDICTED: similar to ( 478) 345 91.1 1.6e-16 gi|133778147|gb|AAI23852.1| ABTB1 protein [Bos tau ( 470) 326 86.5 3.8e-15 gi|126336237|ref|XP_001366658.1| PREDICTED: hypoth ( 478) 322 85.5 7.6e-15 gi|149036700|gb|EDL91318.1| ankyrin repeat and BTB ( 206) 311 82.6 2.4e-14 gi|53130670|emb|CAG31664.1| hypothetical protein [ ( 477) 271 73.2 3.9e-11 gi|149635488|ref|XP_001506861.1| PREDICTED: hypoth ( 650) 270 73.0 5.9e-11 gi|47223159|emb|CAG11294.1| unnamed protein produc ( 476) 252 68.6 9.4e-10 gi|67772153|gb|AAY79329.1| ankyrin repeat and BTB/ ( 102) 244 66.2 1.1e-09 gi|189522150|ref|XP_001337407.2| PREDICTED: simila ( 364) 248 67.6 1.5e-09 gi|47937608|gb|AAH72172.1| Abtb1 protein [Xenopus ( 477) 244 66.7 3.6e-09 gi|134024093|gb|AAI35615.1| Abtb1 protein [Xenopus ( 477) 232 63.8 2.7e-08 gi|210125201|gb|EEA72894.1| hypothetical protein B ( 488) 212 58.9 7.9e-07 gi|210093224|gb|EEA41431.1| hypothetical protein B ( 486) 208 58.0 1.5e-06 gi|156224522|gb|EDO45347.1| predicted protein [Nem ( 491) 191 53.8 2.7e-05 gi|215498803|gb|EEC08297.1| ankyrin repeat contain ( 370) 182 51.6 9.7e-05 gi|198414356|ref|XP_002119669.1| PREDICTED: simila ( 413) 174 49.7 0.0004 gi|115660698|ref|XP_788155.2| PREDICTED: similar t ( 481) 164 47.3 0.0024 >>gi|21748532|dbj|BAC03403.1| FLJ00331 protein [Homo sap (113 aa) initn: 788 init1: 788 opt: 788 Z-score: 1041.0 bits: 197.8 E(): 2.8e-49 Smith-Waterman score: 788; 100.000% identity (100.000% similar) in 113 aa overlap (1-113:1-113) 10 20 30 40 50 60 FLJ003 LLRRQTLALTLPEPGLPQAFFCGRSDYFRALLDDHFRESEEPATSGGPPAVTLHGISPDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 LLRRQTLALTLPEPGLPQAFFCGRSDYFRALLDDHFRESEEPATSGGPPAVTLHGISPDV 10 20 30 40 50 60 70 80 90 100 110 FLJ003 FTHVLYYMYSDHTEVGAQAELGMAHNLCCRGLRGSARALGVCGRAQLAPWLTF ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 FTHVLYYMYSDHTEVGAQAELGMAHNLCCRGLRGSARALGVCGRAQLAPWLTF 70 80 90 100 110 >>gi|34527437|dbj|BAC85392.1| unnamed protein product [H (405 aa) initn: 401 init1: 401 opt: 419 Z-score: 550.6 bits: 108.9 E(): 5.7e-22 Smith-Waterman score: 419; 64.865% identity (74.775% similar) in 111 aa overlap (4-111:107-212) 10 20 30 FLJ003 LLRRQTLALTLPEPGLP---QAFFCGRSDYFRA :. .:: : . .:: .:::::::::::: gi|345 CEKVSEFVASKPGTCVKVLTIEPPPADPRLREDMAL-LADCALPPELRAFFCGRSDYFRA 80 90 100 110 120 130 40 50 60 70 80 90 FLJ003 LLDDHFRESEEPATSGGPPAVTLHGISPDVFTHVLYYMYSDHTEVGAQAELGMAHNLCCR ::::::::::::::::::::::::::::::::::::::::::::.. .: . gi|345 LLDDHFRESEEPATSGGPPAVTLHGISPDVFTHVLYYMYSDHTELSPEAAYDVLSVADMY 140 150 160 170 180 190 100 110 FLJ003 GLRGSARALGVCGRAQLAPWLTF : : : .:::. :: : gi|345 LLPGLKR---LCGRS-LAQMLDEDTVVGVWRVAKLFRLARLEDQCTEYMAKVIEKLVERE 200 210 220 230 240 250 >>gi|189054774|dbj|BAG37596.1| unnamed protein product [ (336 aa) initn: 401 init1: 401 opt: 410 Z-score: 540.0 bits: 106.7 E(): 2.2e-21 Smith-Waterman score: 410; 70.213% identity (77.660% similar) in 94 aa overlap (18-111:145-234) 10 20 30 40 FLJ003 LLRRQTLALTLPEPGLPQAFFCGRSDYFRALLDDHFRESEEPATSGG .::::::::::::::::::::::::::::: gi|189 LWELPFPCPDGFNSCPDICFRVAGCSFLCHKAFFCGRSDYFRALLDDHFRESEEPATSGG 120 130 140 150 160 170 50 60 70 80 90 100 FLJ003 PPAVTLHGISPDVFTHVLYYMYSDHTEVGAQAELGMAHNLCCRGLRGSARALGVCGRAQL :::::::::::::::::::::::::::.. .: . : : : .:::. : gi|189 PPAVTLHGISPDVFTHVLYYMYSDHTELSPEAAYDVLSVADMYLLPGLKR---LCGRS-L 180 190 200 210 220 230 110 FLJ003 APWLTF : : gi|189 AQMLDEDTVVGVWRVAKLFRLARLEDQCTEYMAKVIEKLVEREDFVEAVKEEAAAVAARQ 240 250 260 270 280 290 >>gi|14149102|dbj|BAB55648.1| BPOZ splicing variant type (336 aa) initn: 401 init1: 401 opt: 410 Z-score: 540.0 bits: 106.7 E(): 2.2e-21 Smith-Waterman score: 410; 70.213% identity (77.660% similar) in 94 aa overlap (18-111:145-234) 10 20 30 40 FLJ003 LLRRQTLALTLPEPGLPQAFFCGRSDYFRALLDDHFRESEEPATSGG .::::::::::::::::::::::::::::: gi|141 LWELPFPCPDGFNSCPDICFRVAGCSFLCHKAFFCGRSDYFRALLDDHFRESEEPATSGG 120 130 140 150 160 170 50 60 70 80 90 100 FLJ003 PPAVTLHGISPDVFTHVLYYMYSDHTEVGAQAELGMAHNLCCRGLRGSARALGVCGRAQL :::::::::::::::::::::::::::.. .: . : : : .:::. : gi|141 PPAVTLHGISPDVFTHVLYYMYSDHTELSPEAAYDVLSVADMYLLPGLKR---LCGRS-L 180 190 200 210 220 230 110 FLJ003 APWLTF : : gi|141 AQMLDEDTVVGVWRVAKLFRLARLEDQCTEYMAKVIEKLVEREDFVEAVKEEAAAVAARQ 240 250 260 270 280 290 >>gi|33317158|gb|AAQ04661.1|AF447886_1 Unknown [Homo sap (337 aa) initn: 401 init1: 401 opt: 410 Z-score: 540.0 bits: 106.7 E(): 2.2e-21 Smith-Waterman score: 410; 70.213% identity (77.660% similar) in 94 aa overlap (18-111:146-235) 10 20 30 40 FLJ003 LLRRQTLALTLPEPGLPQAFFCGRSDYFRALLDDHFRESEEPATSGG .::::::::::::::::::::::::::::: gi|333 LWELPFPCPDGFNSCPDICFRVAGCSFLCHKAFFCGRSDYFRALLDDHFRESEEPATSGG 120 130 140 150 160 170 50 60 70 80 90 100 FLJ003 PPAVTLHGISPDVFTHVLYYMYSDHTEVGAQAELGMAHNLCCRGLRGSARALGVCGRAQL :::::::::::::::::::::::::::.. .: . : : : .:::. : gi|333 PPAVTLHGISPDVFTHVLYYMYSDHTELSPEAAYDVLSVADMYLLPGLKR---LCGRS-L 180 190 200 210 220 230 110 FLJ003 APWLTF : : gi|333 AQMLDEDTVVGVWRVAKLFRLARLEDQCTEYMAKVIEKLVEREDFVEAVKEEAAAVAARQ 240 250 260 270 280 290 >>gi|14149106|dbj|BAB55650.1| BPOZ splice variant type 3 (453 aa) initn: 429 init1: 401 opt: 410 Z-score: 538.2 bits: 106.8 E(): 2.8e-21 Smith-Waterman score: 410; 70.213% identity (77.660% similar) in 94 aa overlap (18-111:262-351) 10 20 30 40 FLJ003 LLRRQTLALTLPEPGLPQAFFCGRSDYFRALLDDHFRESEEPATSGG .::::::::::::::::::::::::::::: gi|141 LWELPFPCPDGFNSCPDICFRVAGCSFLCHKAFFCGRSDYFRALLDDHFRESEEPATSGG 240 250 260 270 280 290 50 60 70 80 90 100 FLJ003 PPAVTLHGISPDVFTHVLYYMYSDHTEVGAQAELGMAHNLCCRGLRGSARALGVCGRAQL :::::::::::::::::::::::::::.. .: . : : : .:::. : gi|141 PPAVTLHGISPDVFTHVLYYMYSDHTELSPEAAYDVLSVADMYLLPGLKR---LCGRS-L 300 310 320 330 340 110 FLJ003 APWLTF : : gi|141 AQMLDEDTVVGVWRVAKLFRLARLEDQCTEYMAKVIEKLVEREDFVEAVKEEAAAVAARQ 350 360 370 380 390 400 >>gi|74751721|sp|Q969K4.1|ABTB1_HUMAN RecName: Full=Anky (478 aa) initn: 429 init1: 401 opt: 410 Z-score: 537.8 bits: 106.8 E(): 3e-21 Smith-Waterman score: 410; 70.213% identity (77.660% similar) in 94 aa overlap (18-111:287-376) 10 20 30 40 FLJ003 LLRRQTLALTLPEPGLPQAFFCGRSDYFRALLDDHFRESEEPATSGG .::::::::::::::::::::::::::::: gi|747 LWELPFPCPDGFNSCPDICFRVAGCSFLCHKAFFCGRSDYFRALLDDHFRESEEPATSGG 260 270 280 290 300 310 50 60 70 80 90 100 FLJ003 PPAVTLHGISPDVFTHVLYYMYSDHTEVGAQAELGMAHNLCCRGLRGSARALGVCGRAQL :::::::::::::::::::::::::::.. .: . : : : .:::. : gi|747 PPAVTLHGISPDVFTHVLYYMYSDHTELSPEAAYDVLSVADMYLLPGLKR---LCGRS-L 320 330 340 350 360 370 110 FLJ003 APWLTF : : gi|747 AQMLDEDTVVGVWRVAKLFRLARLEDQCTEYMAKVIEKLVEREDFVEAVKEEAAAVAARQ 380 390 400 410 420 430 >>gi|114589131|ref|XP_526451.2| PREDICTED: ankyrin repea (397 aa) initn: 401 init1: 401 opt: 409 Z-score: 537.7 bits: 106.5 E(): 3e-21 Smith-Waterman score: 409; 71.591% identity (79.545% similar) in 88 aa overlap (18-105:206-290) 10 20 30 40 FLJ003 LLRRQTLALTLPEPGLPQAFFCGRSDYFRALLDDHFRESEEPATSGG .::::::::::::::::::::::::::::: gi|114 LWELPFPCPDGFNSCPDICFRVAGCSFLCHKAFFCGRSDYFRALLDDHFRESEEPATSGG 180 190 200 210 220 230 50 60 70 80 90 100 FLJ003 PPAVTLHGISPDVFTHVLYYMYSDHTEVGAQAELGMAHNLCCRGLRGSARALGVCGRAQL :::::::::::::::::::::::::::.. .: . : : : .:::. gi|114 PPAVTLHGISPDVFTHVLYYMYSDHTELSPEAAYDVLSVADMYLLPGLKR---LCGRSLA 240 250 260 270 280 290 110 FLJ003 APWLTF gi|114 QVLDEDTVVGVWRVAKLFRLARLEDQCTEYMAKVIEKLVEREDFVEAVKEEAAAVAARQE 300 310 320 330 340 350 >>gi|109098149|ref|XP_001099270.1| PREDICTED: similar to (486 aa) initn: 415 init1: 387 opt: 395 Z-score: 518.1 bits: 103.2 E(): 3.7e-20 Smith-Waterman score: 395; 67.045% identity (78.409% similar) in 88 aa overlap (18-105:295-379) 10 20 30 40 FLJ003 LLRRQTLALTLPEPGLPQAFFCGRSDYFRALLDDHFRESEEPATSGG .:::::::::::::::::::::::: :::: gi|109 LWELPFPCPDGFNSCPDVCFRVAGCSFLCHKAFFCGRSDYFRALLDDHFRESEEPETSGG 270 280 290 300 310 320 50 60 70 80 90 100 FLJ003 PPAVTLHGISPDVFTHVLYYMYSDHTEVGAQAELGMAHNLCCRGLRGSARALGVCGRAQL :::.::::::::.:::::::.::::::.. .: . : : : .:::. gi|109 PPAITLHGISPDIFTHVLYYVYSDHTELSPEAAYDVLSIADMYLLPGLKR---LCGRSLA 330 340 350 360 370 380 110 FLJ003 APWLTF gi|109 QVLDEDSVVGVWRVAKLFRLARLEDQCTEYMAKVIEKLVEREDFVEAVKEEAAAVAARQE 390 400 410 420 430 440 >>gi|81889886|sp|Q5XIU1.1|ABTB1_RAT RecName: Full=Ankyri (478 aa) initn: 410 init1: 355 opt: 362 Z-score: 475.1 bits: 95.2 E(): 9.2e-18 Smith-Waterman score: 362; 63.043% identity (73.913% similar) in 92 aa overlap (18-107:287-375) 10 20 30 40 FLJ003 LLRRQTLALTLPEPGLPQAFFCGRSDYFRALLDDHFRESEEPATSGG .::::::::::::::::::::::::..:: gi|818 LGELPFPCPDGFSSCPDICFRVADSSFLCHKAFFCGRSDYFRALLDDHFRESEEPVASGD 260 270 280 290 300 310 50 60 70 80 90 100 FLJ003 PPAVTLHGISPDVFTHVLYYMYSDHTEVGAQAELGMAHNLCCRGLRGSARALGVCGR--A ::.:::: ::::.:::::::.::::::. . . : : : .::: : gi|818 PPVVTLHDISPDIFTHVLYYVYSDHTELPPELAYDVLSVADMYLLPGLKR---LCGRSLA 320 330 340 350 360 370 110 FLJ003 QLAPWLTF :: gi|818 QLLEEDSVVGVWRIAKLFRLARLEDQCTEYMAKVIEKLVEREDFVEAVREEAAAVAARQE 380 390 400 410 420 430 113 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 16:00:48 2009 done: Fri Feb 27 16:04:38 2009 Total Scan time: 536.610 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]