# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj03430.fasta.huge -Q ../query/FLJ00331.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00331, 113 aa vs ./tmplib.10216 library 2210881 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 3.1416+/-0.00337; mu= 20.0273+/- 0.229 mean_var=67.0803+/-14.588, 0's: 0 Z-trim: 3 B-trim: 0 in 0/40 Lambda= 0.156595 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0469 ( 559 res) hg01666 ( 559) 104 31.3 0.06 FLJ00393 ( 547 res) sj05490 ( 547) 97 29.7 0.18 KIAA1880 ( 642 res) ah02167 ( 642) 88 27.7 0.79 KIAA0557 ( 493 res) hh01334 ( 493) 84 26.7 1.3 KIAA0747 ( 1072 res) hk04143 (1072) 78 25.9 4.9 KIAA1525 ( 1135 res) fj15588 (1135) 77 25.7 5.9 KIAA1693 ( 901 res) fj10588 ( 901) 76 25.3 6.1 KIAA1339 ( 409 res) fj00071 ( 409) 72 23.8 7.8 FLJ00361 ( 366 res) sh04352 ( 366) 71 23.5 8.6 FLJ00268 ( 695 res) sj05723 ( 695) 72 24.2 10 KIAA1978 ( 384 res) fj03313 ( 384) 70 23.3 10 KIAA1900 ( 582 res) fk07650 ( 582) 71 23.8 11 KIAA1126 ( 618 res) hg02277 ( 618) 71 23.9 11 KIAA1509 ( 1365 res) fh14721 (1365) 73 24.9 12 FLJ00221 ( 298 res) sj06160 ( 298) 68 22.7 12 KIAA1197 ( 1487 res) fg01844 (1487) 73 25.0 13 KIAA1371 ( 395 res) fj03325 ( 395) 68 22.9 14 KIAA1227 ( 1069 res) fh04710 (1069) 71 24.3 15 FLJ00042 ( 452 res) as00042 ( 452) 68 23.0 15 KIAA0838 ( 677 res) hk03864 ( 677) 69 23.5 16 KIAA0404 ( 1956 res) hg01236 (1956) 72 24.9 17 KIAA1810 ( 579 res) fk03376 ( 579) 68 23.2 17 KIAA0279 ( 2854 res) ff05612 (2854) 73 25.5 17 KIAA0855 ( 632 res) hk06219 ( 632) 68 23.2 18 KIAA1719 ( 1050 res) pf00330s1 (1050) 68 23.6 23 KIAA0296 ( 1838 res) hf00260 (1838) 69 24.2 26 KIAA1609 ( 473 res) fj11503 ( 473) 64 22.1 29 KIAA1687 ( 728 res) fh26020 ( 728) 65 22.6 31 KIAA1029 ( 1015 res) fh00363 (1015) 66 23.1 31 KIAA1631 ( 1032 res) fh15959s1 (1032) 66 23.1 31 KIAA1583 ( 435 res) fj06651 ( 435) 63 21.8 33 KIAA0515 ( 670 res) hg00183 ( 670) 64 22.4 34 KIAA1425 ( 495 res) hj01333(revised) ( 495) 63 21.9 35 KIAA0410 ( 505 res) hg01877 ( 505) 63 21.9 35 KIAA0090 ( 991 res) eh00576 ( 991) 65 22.9 36 KIAA0242 ( 529 res) ha03111(revised) ( 529) 63 22.0 36 KIAA1299 ( 730 res) fg04370 ( 730) 64 22.4 36 KIAA0894 ( 553 res) hk08775 ( 553) 63 22.0 37 KIAA1372 ( 773 res) fj03335 ( 773) 64 22.5 37 KIAA1912 ( 589 res) fj18220 ( 589) 63 22.0 38 KIAA1967 ( 818 res) fj04244 ( 818) 64 22.5 38 KIAA1662 ( 1653 res) fj03879s1 (1653) 66 23.5 39 KIAA1518 ( 876 res) sh00483 ( 876) 64 22.6 39 KIAA0873 ( 466 res) hk07246 ( 466) 62 21.6 39 KIAA1734 ( 1313 res) ph00331 (1313) 65 23.1 41 KIAA1036 ( 380 res) fh01447 ( 380) 61 21.3 42 FLJ00217 ( 547 res) sj05423 ( 547) 62 21.8 43 KIAA0393 ( 1433 res) hg01266(revised) (1433) 65 23.1 43 KIAA0724 ( 1047 res) hk02773 (1047) 64 22.7 43 KIAA0881 ( 1064 res) hk07534 (1064) 64 22.7 43 >>KIAA0469 ( 559 res) hg01666 (559 aa) initn: 128 init1: 64 opt: 104 Z-score: 128.3 bits: 31.3 E(): 0.06 Smith-Waterman score: 104; 32.530% identity (56.627% similar) in 83 aa overlap (4-80:52-127) 10 20 FLJ003 LLRRQTLALTLPEPG---LP--QAFFCGRSDYF :. : .:: : .: .: . . : :: KIAA04 ERPAPLAVLPFSDPAHALSLLRGLSQLRAERKFLDVTLEAAGGRDFPAHRAVLAAASPYF 30 40 50 60 70 80 30 40 50 60 70 80 FLJ003 RALLDDHFRESEEPATSGGPPAVTLHGISPDVFTHVLYYMYSDHTEV-GAQAELGMAHNL ::.. ..:::. : :::. ::.. .: . :. .. : : .:: KIAA04 RAMFAGQLRESRAER-------VRLHGVPPDMLQLLLDFSYTGRVAVSGDNAEPLLRAAD 90 100 110 120 130 90 100 110 FLJ003 CCRGLRGSARALGVCGRAQLAPWLTF KIAA04 LLQFPAVKEACGAFLQQQLDLANCLDMQDFAEAFSCSGLASAAQRFILRHVGELGAEQLE 140 150 160 170 180 190 >>FLJ00393 ( 547 res) sj05490 (547 aa) initn: 128 init1: 64 opt: 97 Z-score: 119.8 bits: 29.7 E(): 0.18 Smith-Waterman score: 97; 32.812% identity (59.375% similar) in 64 aa overlap (18-80:1-57) 10 20 30 40 50 60 FLJ003 LLRRQTLALTLPEPGLPQAFFCGRSDYFRALLDDHFRESEEPATSGGPPAVTLHGISPDV .: . . : ::::.. ..:::. : :::. ::. FLJ003 RAVLAAASPYFRAMFAGQLRESRA-------ERVRLHGVPPDM 10 20 30 70 80 90 100 110 FLJ003 FTHVLYYMYSDHTEV-GAQAELGMAHNLCCRGLRGSARALGVCGRAQLAPWLTF . .: . :. .. : : .:: FLJ003 LQLLLDFSYTGRVAVSGDNAEPLLRAADLLQFPAVKEACGAFLQQQLDLANCLDMQDFAE 40 50 60 70 80 90 >>KIAA1880 ( 642 res) ah02167 (642 aa) initn: 62 init1: 62 opt: 88 Z-score: 108.2 bits: 27.7 E(): 0.79 Smith-Waterman score: 88; 28.378% identity (58.108% similar) in 74 aa overlap (18-85:81-148) 10 20 30 40 FLJ003 LLRRQTLALTLPEPGLPQAFFCGRSDYFRALLDDHFRESEEPATSGG .... .: .:::::: .:::. : KIAA18 ILSEHIGALLIGEEYGDVTFVVEKKRFPAHRVILAARCQYFRALLYGGMRESQPEAE--- 60 70 80 90 100 50 60 70 80 90 100 FLJ003 PPAVTLHGISPDVFTHVLYYMYSDHTEVGAQAE------LGMAHNLCCRGLRGSARALGV . :. . ..:: .: :.:. .. . . : :..:: KIAA18 ---IPLQDTTAEAFTMLLKYIYTGRATLTDEKEEVLLDFLSLAHKYGFPELEDSTSEYLC 110 120 130 140 150 160 110 FLJ003 CGRAQLAPWLTF KIAA18 TILNIQNVCMTFDVASLYSLPKLTCMCCMFMDRNAQEVLSSEGFLSLSKTALLNIVLRDS 170 180 190 200 210 220 >>KIAA0557 ( 493 res) hh01334 (493 aa) initn: 47 init1: 47 opt: 84 Z-score: 104.3 bits: 26.7 E(): 1.3 Smith-Waterman score: 84; 30.612% identity (57.143% similar) in 49 aa overlap (49-97:50-97) 20 30 40 50 60 70 FLJ003 AFFCGRSDYFRALLDDHFRESEEPATSGGPPAVTLHGISPDVFTHVLYYMYSDHTEVGAQ :.: . ::..: . :. .. . .: . KIAA05 LQPLPTLEQDLEQEEILIVKVEEDFCLEEEPSVETEDPSPETFRQ-LFRLFCYQEVAGPR 20 30 40 50 60 70 80 90 100 110 FLJ003 AELGMAHNLCCRGLRGSARALGVCGRAQLAPWLTF :. .:::: :: : KIAA05 EALSRLWELCCRWLRPELRTKEQILELLVLEQFLTVLPGEIQARVREQQPESGEEAVVLV 80 90 100 110 120 130 >>KIAA0747 ( 1072 res) hk04143 (1072 aa) initn: 97 init1: 73 opt: 78 Z-score: 94.0 bits: 25.9 E(): 4.9 Smith-Waterman score: 78; 29.630% identity (54.321% similar) in 81 aa overlap (39-113:903-980) 10 20 30 40 50 60 FLJ003 LTLPEPGLPQAFFCGRSDYFRALLDDHFRESEEPATSGGPPAVTLHGISPDV---FTHVL :::: ::::: .: . .:.. .::: KIAA07 LLRAQLGILVSQHSGVEAHSHSYSHSSSSLSEEPELSGGPPHIT--SSAPELRQRLTHVD 880 890 900 910 920 930 70 80 90 100 110 FLJ003 YYMYSDHTEVGAQAELGMAHNLCCRGLRG---SARALGVCGRAQLAPWLTF . . .: :..: . . : : . . :.: :: :.... KIAA07 SPLEAPAGPLG-QVKLTLWYYSEERKLVSIVHGCRSLRQNGRDPPDPYVSLLLLPDKNRG 940 950 960 970 980 KIAA07 TKRRTSQKKRTLSPEFNERFEWELPLDEAQRRKLDVSVKSNSSFMSRERELLGKVQLDLA 990 1000 1010 1020 1030 1040 >>KIAA1525 ( 1135 res) fj15588 (1135 aa) initn: 83 init1: 60 opt: 77 Z-score: 92.6 bits: 25.7 E(): 5.9 Smith-Waterman score: 77; 34.483% identity (62.069% similar) in 58 aa overlap (18-71:281-338) 10 20 30 40 FLJ003 LLRRQTLALTLPEPGLPQAFFCGRSDYFRALLDDHFRESEEPA--TS .: . .:: .:: ::. ..: .:: . : KIAA15 DVVLSFSSDSELVEAFGGNQNCLDEELKAHKAVISARSPFFRNLLQRRIRTGEEITDRTL 260 270 280 290 300 310 50 60 70 80 90 100 FLJ003 GGPPAVTL-HGISPDVF-THVLYYMYSDHTEVGAQAELGMAHNLCCRGLRGSARALGVCG : . : ..: : . : .:. ::.: KIAA15 RTPTRIILDESIIPKKYATVILHCMYTDVVDLSVLHCSPSVGSLSEVQALVAGKPNMTRA 320 330 340 350 360 370 >>KIAA1693 ( 901 res) fj10588 (901 aa) initn: 70 init1: 45 opt: 76 Z-score: 92.2 bits: 25.3 E(): 6.1 Smith-Waterman score: 76; 28.571% identity (54.286% similar) in 70 aa overlap (9-70:680-749) 10 20 30 FLJ003 LLRRQTLALTLPEPGLP--QAFFCGRSDYFRALLD-DH : ::. : : .: . . .:. :: :. KIAA16 PRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYRSAVYSLEEQYLGLALDVDR 650 660 670 680 690 700 40 50 60 70 80 90 FLJ003 FRESEEPATSGGPPAVTL-----HGISPDVFTHVLYYMYSDHTEVGAQAELGMAHNLCCR .....: . ::: : ... :.:. : :: KIAA16 IKKDQEEEEDQGPPCPRLSRELLEAVEPEVLQDSLDRCYSTPSSCLEQPDSCLPYGSSFY 710 720 730 740 750 760 100 110 FLJ003 GLRGSARALGVCGRAQLAPWLTF KIAA16 ALEEKHVGFSLDVGEIEKKGKGKKRRGRRSTKKRRRRGRKEGEEDQNPPCPRLSGVLMEV 770 780 790 800 810 820 >>KIAA1339 ( 409 res) fj00071 (409 aa) initn: 66 init1: 66 opt: 72 Z-score: 90.4 bits: 23.8 E(): 7.8 Smith-Waterman score: 72; 34.286% identity (54.286% similar) in 35 aa overlap (21-49:338-372) 10 20 30 40 FLJ003 LLRRQTLALTLPEPGLPQAFFCGRSDYFRALLDDHFRESE------EPAT .:::: .. : ::.: .. . KIAA13 CPHCGKSFIRKHHLMKHQRIHTGERPYPCSYCGRSFRYKQTLKDHLRSGHNGGCGGDSDP 310 320 330 340 350 360 50 60 70 80 90 100 FLJ003 SGGPPAVTLHGISPDVFTHVLYYMYSDHTEVGAQAELGMAHNLCCRGLRGSARALGVCGR :: :: KIAA13 SGQPPNPPGPLITGLETSGLGVNTEGLETNQWYGEGSGGGVL 370 380 390 400 >>FLJ00361 ( 366 res) sh04352 (366 aa) initn: 59 init1: 59 opt: 71 Z-score: 89.6 bits: 23.5 E(): 8.6 Smith-Waterman score: 71; 35.294% identity (52.941% similar) in 51 aa overlap (7-55:20-68) 10 20 30 40 FLJ003 LLRRQTLALTLPEPGLPQAFFCGRSDYFRALLDDHFR--ESEEPATS :. :.: : . : :: . .:. :::: :.. FLJ003 SLVKGTWERHSSAYPGMSVLSAPAPRPPAPPGHFS--PPRPRAQILRRFQGAESEESAAA 10 20 30 40 50 50 60 70 80 90 100 FLJ003 GGPPAVTLHGISPDVFTHVLYYMYSDHTEVGAQAELGMAHNLCCRGLRGSARALGVCGRA :: .::: FLJ003 WGPAWRNLHGEAAGRHSPDAPGTTAPPRPRASRRALSAPAPFRQEMHLWHQVQVLPPGEA 60 70 80 90 100 110 >>FLJ00268 ( 695 res) sj05723 (695 aa) initn: 86 init1: 43 opt: 72 Z-score: 88.4 bits: 24.2 E(): 10 Smith-Waterman score: 72; 35.821% identity (47.761% similar) in 67 aa overlap (49-109:342-406) 20 30 40 50 60 70 FLJ003 AFFCGRSDYFRALLDDHFRESEEPATSGGPPAVTLHGISPDVFTHVLYYMYSDHTEVGAQ : . ::: : ..: :. . . :: FLJ002 QCNVSATLQEPAGTSRDAGVVCSAEVGTASPMARRHGI-PGALTLSLHREPQGAAGRGAG 320 330 340 350 360 370 80 90 100 110 FLJ003 AELGMAHNLCCRG---LRGS---ARALGVCGRAQLAPWLTF : : : . : :: . : :: :::: :: FLJ002 ALHGGAWGTVCDDAWELRDAHVVCRQLG-CGRALSAPGGRTLRSRGRAHLAGRAGLPGPR 380 390 400 410 420 FLJ002 VCAVAVPVGGLGAARLEAQGGRRRLLLRVGGSEAARWDLLLCWVAGRVLQWDLGRRVQQC 430 440 450 460 470 480 113 residues in 1 query sequences 2210881 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:51:53 2009 done: Fri Feb 27 10:51:53 2009 Total Scan time: 0.300 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]