hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/shimazu/full/sj/sj02282/interpro/cnk_1/seq.in
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Query:  sj02282  201

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PH       Pleckstrin homology domain.                     58.0    1.3e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/1       5   112 ..     1    82 []    58.0  1.3e-12

Alignments of top-scoring domains:
PH: domain 1 of 1, from 5 to 112: score 58.0, E = 1.3e-12
                   *->vikeGwLlkks.k.swkkryfvLfngvLlyyksk.......kpkgsi
                      +i++G L+k ++ ++ ++r f+Lf+++L+ +k++  +++   +kg++
     sj02282     5    LIHSGELTKITkQgKSQQRTFFLFDHQLVSCKKDllrrdmlYYKGRL 51   

                   pLsgcsvre.p.............cFeivt.dr..tlllqAeseeereeW
                   +++++++++  ++++++ + + +++F++v+++ ++++l++A+ +e++ +W
     sj02282    52 DMDEMELVDlGdgrdkdcnlsvknAFKLVSrTTdeVYLFCAKKQEDKARW 101  

                   vealqsaiaka<-*
                   ++a  +  ++    
     sj02282   102 LQACADERRRV    112  

//