hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/shimazu/full/sj/sj02282/interpro/cnk_1/seq.in
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Query:  sj02282  201

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PH       PH domain                                       57.8    2.3e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/1       5   110 ..     1    92 []    57.8  2.3e-13

Alignments of top-scoring domains:
PH: domain 1 of 1, from 5 to 110: score 57.8, E = 2.3e-13
                   *->vikeGwLlkkggkkswkkRyfvLfndvLlyykdkk.....kkpkgsi
                      +i++G+L+k ++ ++ ++R f+Lf+++L+ +k++  +++   +kg +
     sj02282     5    LIHSGELTKITKQGKSQQRTFFLFDHQLVSCKKDLlrrdmLYYKGRL 51   

                   pLsgiqvekvpdn.......krkncFeirt.dr.etlllqaeseeerkeW
                   ++++++++++ d+++++ +   kn+F++++++ +e++l++a+ +e++ +W
     sj02282    52 DMDEMELVDLGDGrdkdcnlSVKNAFKLVSrTTdEVYLFCAKKQEDKARW 101  

                   vkaiqsair<-*
                   ++a+ ++ r   
     sj02282   102 LQACADERR    110  

//