hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/shimazu/full/sj/sj02149/interpro/cnk_1/seq.in
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Query:  sj02149  563

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LER      leucine rich region                            268.7    4.4e-76   1
ZnF_C2H2 zinc finger                                    133.2    2.7e-35   6
KRAB     krueppel associated box                         32.3    6.7e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LER        1/1      52   162 ..     1   113 []   268.7  4.4e-76
KRAB       1/1     227   287 ..     1    62 []    32.3  6.7e-05
ZnF_C2H2   1/6     377   399 ..     1    23 []    25.6   0.0067
ZnF_C2H2   2/6     405   427 ..     1    23 []    26.7   0.0032
ZnF_C2H2   3/6     433   455 ..     1    23 []    26.8   0.0029
ZnF_C2H2   4/6     461   483 ..     1    23 []    30.7  0.00021
ZnF_C2H2   5/6     489   511 ..     1    23 []    27.4    0.002
ZnF_C2H2   6/6     517   539 ..     1    23 []    26.8   0.0029

Alignments of top-scoring domains:
LER: domain 1 of 1, from 52 to 162: score 268.7, E = 4.4e-76
                   *->pEifRqrFRqFrYqEtsGPREALSRLRELCrqWLRPElhTKEQILEL
                      pEifRqrFR+F+Yq+t+GPREALSRL+ELC+qWLRPE++TKEQILEL
     sj02149    52    PEIFRQRFRRFCYQNTFGPREALSRLKELCHQWLRPEINTKEQILEL 98   

                   LVLEQFLTILPgELQaWVrehhPeSGEEAVtLlEdLereLdepgqqVsah
                   LVLEQFL+ILP+ELQ+W +e++P+SGEEAVtLlEdLe  Ld  gqqV+++
     sj02149    99 LVLEQFLSILPKELQVWLQEYRPDSGEEAVTLLEDLE--LDLSGQQVPGQ 146  

                   vhgqevLleemvplga<-*
                   vhg e+L + mvpl++   
     sj02149   147 VHGPEMLARGMVPLDP    162  

KRAB: domain 1 of 1, from 227 to 287: score 32.3, E = 6.7e-05
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
                      V++eD+AV++  EEW+++  a+rnL Rd  +ENY+  +  G  +  +
     sj02149   227    VKIEDMAVSLILEEWGCQNLARRNLSRDNRQENYGSAFPQG-GENRN 272  

                   pdliskLEqgeEpwi<-*
                     + s    +    +   
     sj02149   273 ENEESTSKAETSEDS    287  

ZnF_C2H2: domain 1 of 6, from 377 to 399: score 25.6, E = 0.0067
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgk+f++ ++L+rH  +H   
     sj02149   377    HRCDE-CGKCFTRSsSLIRHKIIH    399  

ZnF_C2H2: domain 2 of 6, from 405 to 427: score 26.7, E = 0.0032
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk fs  ++L+ H+r+H   
     sj02149   405    YECSE-CGKAFSLNsNLVLHQRIH    427  

ZnF_C2H2: domain 3 of 6, from 433 to 455: score 26.8, E = 0.0029
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgk fs+ ++L+ H+r+H   
     sj02149   433    HECNE-CGKAFSHSsNLILHQRIH    455  

ZnF_C2H2: domain 4 of 6, from 461 to 483: score 30.7, E = 0.00021
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk fs+ ++L++H+r+H   
     sj02149   461    YECNE-CGKAFSQSsDLTKHQRIH    483  

ZnF_C2H2: domain 5 of 6, from 489 to 511: score 27.4, E = 0.002
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f++ + L+ H r+H   
     sj02149   489    YECSE-CGKAFNRNsYLILHRRIH    511  

ZnF_C2H2: domain 6 of 6, from 517 to 539: score 26.8, E = 0.0029
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk f++ + L+ H r+H   
     sj02149   517    YKCTK-CGKAFTRSsTLTLHHRIH    539  

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