hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/shimazu/full/sj/sj02149/interpro/cnk_1/seq.in
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Query:  sj02149  563

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SCAN     SCAN domain                                    213.2      4e-60   1
zf-C2H2  Zinc finger, C2H2 type                         183.3    3.9e-51   6
KRAB     KRAB box                                        46.4    6.6e-10   1
GATA     GATA zinc finger                                10.4       0.21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SCAN       1/1      50   143 ..     1    96 []   213.2    4e-60
KRAB       1/1     227   267 ..     1    41 []    46.4  6.6e-10
zf-C2H2    1/6     377   399 ..     1    24 []    33.3  5.8e-06
GATA       1/1     382   420 ..     1    36 []    10.4     0.21
zf-C2H2    2/6     405   427 ..     1    24 []    35.5  1.2e-06
zf-C2H2    3/6     433   455 ..     1    24 []    36.3  7.1e-07
zf-C2H2    4/6     461   483 ..     1    24 []    40.8  3.1e-08
zf-C2H2    5/6     489   511 ..     1    24 []    35.3  1.4e-06
zf-C2H2    6/6     517   539 ..     1    24 []    34.8    2e-06

Alignments of top-scoring domains:
SCAN: domain 1 of 1, from 50 to 143: score 213.2, E = 4e-60
                   *->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL
                      p+pEifRqrFR+f+Yq t GPrEALsrL+eLChqWLrPE++TKEQIL
     sj02149    50    PDPEIFRQRFRRFCYQNTFGPREALSRLKELCHQWLRPEINTKEQIL 96   

                   ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlEdLerelDepgqqV<
                   ELLVLEQFL+ILPkElQ w qe  P SgEEaVtLlEdL  elD  gqqV 
     sj02149    97 ELLVLEQFLSILPKELQVWLQEYRPDSGEEAVTLLEDL--ELDLSGQQV  143  

                   -*
                     
     sj02149     -    -    

KRAB: domain 1 of 1, from 227 to 267: score 46.4, E = 6.6e-10
                   *->VtFeDVAVdFtqEEWglLdpaQrnLYrdVMlENyrnLvSlg<-*
                      V  eD AV++  EEWg+ + a rnL rd  +ENy++ +  g   
     sj02149   227    VKIEDMAVSLILEEWGCQNLARRNLSRDNRQENYGSAFPQG    267  

zf-C2H2: domain 1 of 6, from 377 to 399: score 33.3, E = 5.8e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +Cgk+F+r+s+L rH+ +H   
     sj02149   377    HRCD-ECGKCFTRSSSLIRHKIIH    399  

GATA: domain 1 of 1, from 382 to 420: score 10.4, E = 0.21
                   *->CsnCgttkTplWRrgp....dGnktLCNACGLyykkhgvk<-*
                      C  C t++++l R+   +++++++ +C  CG  + ++  +   
     sj02149   382    CGKCFTRSSSLIRHKIihtgEKPY-ECSECGKAFSLNSNL    420  

zf-C2H2: domain 2 of 6, from 405 to 427: score 35.5, E = 1.2e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+Fs +snL  H+r+H   
     sj02149   405    YECS-ECGKAFSLNSNLVLHQRIH    427  

zf-C2H2: domain 3 of 6, from 433 to 455: score 36.3, E = 7.1e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +Cgk+Fs++snL  H+r+H   
     sj02149   433    HECN-ECGKAFSHSSNLILHQRIH    455  

zf-C2H2: domain 4 of 6, from 461 to 483: score 40.8, E = 3.1e-08
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+Fs++s+L++H+r+H   
     sj02149   461    YECN-ECGKAFSQSSDLTKHQRIH    483  

zf-C2H2: domain 5 of 6, from 489 to 511: score 35.3, E = 1.4e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+F+r+s L  H+r+H   
     sj02149   489    YECS-ECGKAFNRNSYLILHRRIH    511  

zf-C2H2: domain 6 of 6, from 517 to 539: score 34.8, E = 2e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cgk+F+r+s+L+ H r+H   
     sj02149   517    YKCT-KCGKAFTRSSTLTLHHRIH    539  

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