# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj01602.fasta.huge -Q ../query/FLJ00183.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00183, 227 aa vs ./tmplib.10216 library 2210767 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.8526+/-0.00431; mu= 13.3006+/- 0.291 mean_var=108.4958+/-24.800, 0's: 0 Z-trim: 0 B-trim: 128 in 1/39 Lambda= 0.123131 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0634 ( 1321 res) hj03064 (1321) 98 27.9 3 KIAA1810 ( 579 res) fk03376 ( 579) 93 26.5 3.4 KIAA1464 ( 621 res) fh18679 ( 621) 91 26.2 4.5 KIAA1442 ( 627 res) hh10127b ( 627) 91 26.2 4.5 FLJ00378 ( 855 res) sj00210 ( 855) 92 26.6 4.8 FLJ00202 ( 233 res) sj04223 ( 233) 82 24.0 7.6 KIAA1787 ( 1564 res) fh19054 (1564) 91 26.7 7.8 KIAA1685 ( 1505 res) pf04287 (1505) 89 26.4 9.8 KIAA0512 ( 710 res) hf00239 ( 710) 85 25.2 10 KIAA0719 ( 624 res) hk01141 ( 624) 84 25.0 11 KIAA0601 ( 886 res) hg00838a ( 886) 85 25.3 12 KIAA0602 ( 962 res) hg01082b ( 962) 84 25.2 14 FLJ00310 ( 291 res) sh06047 ( 291) 77 23.3 16 KIAA0102 ( 225 res) ha00791 ( 225) 75 22.8 18 FLJ00375 ( 708 res) sh07824 ( 708) 80 24.3 19 KIAA1957 ( 481 res) fk12643 ( 481) 78 23.7 19 KIAA1579 ( 704 res) fj04678 ( 704) 79 24.1 21 KIAA0999 ( 1371 res) fj10213 (1371) 82 25.1 22 KIAA2038 ( 917 res) pj01991 ( 917) 80 24.5 22 KIAA0330 ( 2224 res) hg00894s1 (2224) 84 25.7 23 KIAA0190 ( 813 res) ha03225 ( 813) 79 24.2 23 KIAA1478 ( 570 res) fj05212 ( 570) 77 23.7 24 KIAA1762 ( 1460 res) fh27937(revised) (1460) 81 24.9 26 KIAA2015 ( 996 res) fk09763 ( 996) 79 24.3 26 FLJ00198 ( 677 res) sj03504 ( 677) 77 23.8 26 KIAA0600 ( 1080 res) fh08981 (1080) 79 24.4 27 KIAA1713 ( 1652 res) fh22344 (1652) 81 25.0 28 FLJ00019 ( 732 res) as00019 ( 732) 77 23.8 28 KIAA1359 ( 517 res) fj02042 ( 517) 75 23.2 29 FLJ00237 ( 351 res) sj07406 ( 351) 73 22.7 29 FLJ00246 ( 1486 res) sj08543 (1486) 80 24.7 29 KIAA0990 ( 883 res) hk05454 ( 883) 77 23.9 31 KIAA1912 ( 589 res) fj18220 ( 589) 75 23.3 31 KIAA0481 ( 732 res) hm00132 ( 732) 76 23.6 31 FLJ00113 ( 419 res) as00113 ( 419) 73 22.8 32 FLJ00207 ( 288 res) sj04935 ( 288) 71 22.2 33 KIAA0995 ( 1014 res) hk07740 (1014) 77 24.0 34 FLJ00142 ( 674 res) sh04107 ( 674) 75 23.4 34 KIAA0007 ( 686 res) ha02056 ( 686) 75 23.4 34 FLJ00269 ( 1383 res) sj06049 (1383) 78 24.4 36 KIAA1363 ( 430 res) fj02385 ( 430) 72 22.6 37 KIAA0160 ( 803 res) ha03912s1 ( 803) 75 23.5 37 KIAA0492 ( 167 res) hh01162 ( 167) 67 21.2 39 KIAA0996 ( 869 res) hk07913 ( 869) 75 23.5 39 KIAA1121 ( 1390 res) hh10147 (1390) 77 24.2 41 KIAA0096 ( 766 res) ha01240s1 ( 766) 74 23.3 41 KIAA1730 ( 787 res) pg01135 ( 787) 74 23.3 42 KIAA0705 ( 1483 res) hg03359s1 (1483) 77 24.2 42 KIAA1197 ( 1487 res) fg01844 (1487) 77 24.2 42 KIAA1499 ( 660 res) hh04716 ( 660) 73 23.0 42 >>KIAA0634 ( 1321 res) hj03064 (1321 aa) initn: 209 init1: 78 opt: 98 Z-score: 97.8 bits: 27.9 E(): 3 Smith-Waterman score: 98; 39.655% identity (70.690% similar) in 58 aa overlap (3-56:119-176) 10 20 30 FLJ001 KMAAAAAAAGA-AGSAAPAAAAGAPGSGGAPS : :.:.::. ::.:: ::. :.:::.:. . KIAA06 SREPDSPCRLKTVTVSTLPALRESDIGWSGARAGAGAGTGAGAAAAAASPGSPGSAGTAA 90 100 110 120 130 140 40 50 60 70 80 FLJ001 GSQGVL-IGDRLYSGVLIT--LENCLLPDDKLRFTPSMSSGLDTDTETDLRVVGCELIQA :. .: . ..: . . . :.: :: KIAA06 ESRLLLFVRNELPGRIAVQDDLDNTELPFFTLEMSGTAADISLVHWRQQWLENGTLYFHV 150 160 170 180 190 200 >>KIAA1810 ( 579 res) fk03376 (579 aa) initn: 133 init1: 77 opt: 93 Z-score: 96.9 bits: 26.5 E(): 3.4 Smith-Waterman score: 93; 57.143% identity (92.857% similar) in 28 aa overlap (3-30:382-408) 10 20 30 FLJ001 KMAAAAAAAGAAGSAAPAAAAGAPGSGGAPSG ::...:::....:: :.:.: ::::.:: KIAA18 GPFPPVPPPPSSGEAVAPPSTSAALSRPSGAATTTAAGTSATAASATASG-PGSGSAPEA 360 370 380 390 400 410 40 50 60 70 80 90 FLJ001 SQGVLIGDRLYSGVLITLENCLLPDDKLRFTPSMSSGLDTDTETDLRVVGCELIQAAGIL KIAA18 GPAPGFPFPPPWMGMPLPPPFAFPPMPVPPAGFAGLTPEELRALEGHERQHLEARLQSLR 420 430 440 450 460 470 >>KIAA1464 ( 621 res) fh18679 (621 aa) initn: 99 init1: 73 opt: 91 Z-score: 94.6 bits: 26.2 E(): 4.5 Smith-Waterman score: 91; 35.135% identity (56.757% similar) in 74 aa overlap (1-69:1-72) 10 20 30 40 50 FLJ001 KMAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLIG--DRLYSGV---LITLENCLL :::::.: :: :. :. ..:. ..:: :: .. : .::: .: : KIAA14 KMAAATADPGA-GNPQPGDSSGGGAGGGLPSPGEQELSRRLQRLYPAVNQQETPLPRSWS 10 20 30 40 50 60 70 80 90 100 110 FLJ001 PDDKLRFTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKS : :: . ..:.: KIAA14 PKDKYNYI-GLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGY 60 70 80 90 100 110 >>KIAA1442 ( 627 res) hh10127b (627 aa) initn: 129 init1: 76 opt: 91 Z-score: 94.6 bits: 26.2 E(): 4.5 Smith-Waterman score: 91; 30.952% identity (69.048% similar) in 42 aa overlap (14-55:336-377) 10 20 30 40 FLJ001 KMAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLIGDRLY .:.: : .:: : . .:. ..::: .. KIAA14 DGHVLAVSDNMFVHNNSKHGRRARRLDPSEAATPCIKAISPGEGWTTGGATVIVIGDNFF 310 320 330 340 350 360 50 60 70 80 90 100 FLJ001 SGVLITLENCLLPDDKLRFTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATG .:. ... : :. KIAA14 DGLQVVFGNVLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGCPGRFVYTALN 370 380 390 400 410 420 >>FLJ00378 ( 855 res) sj00210 (855 aa) initn: 56 init1: 56 opt: 92 Z-score: 94.1 bits: 26.6 E(): 4.8 Smith-Waterman score: 92; 27.407% identity (49.630% similar) in 135 aa overlap (5-129:60-190) 10 20 30 FLJ001 KMAAAAAAAGAAGSAAPAAAAGAP---GSGGAPS ::::. .::.: :.. :: : : : FLJ003 WALTRDGTCDTGASSYRVLPAARLPFSRRYAAAATVSAGAALPSGRAGRRQLRGPRGLGS 30 40 50 60 70 80 40 50 60 70 80 FLJ001 GSQGVLIGD---RLYSGVLITLENC--LLPDDKLRFTPSMSSGLDTDTETDLRVVGCELI : .: : .: : : . ::: .. . :: . : .. : . :. FLJ003 GHVRALAGACPCNGEAGGLPGLTEAPQLLPPSQPQVRGSMHTRPDPSSATAYLCLDSVLV 90 100 110 120 130 140 90 100 110 120 130 140 FLJ001 QAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSM--EHVSMACVHLASKIEEAPRRIRD : .: : : .. .. :: . .... . :..:. :: FLJ003 AEDGAVLFQPPPANGS----YDSFFLAPELAEERLVTEKASVYCVAAVLWTAAKFSVPRN 150 160 170 180 190 200 150 160 170 180 190 200 FLJ001 VINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMY FLJ003 HKLALPRRLKTLLLDMARRSAPERPSAAEAIKVCGSYLLQRGMDSRKILAHLRASICQVY 210 220 230 240 250 260 >>FLJ00202 ( 233 res) sj04223 (233 aa) initn: 53 init1: 53 opt: 82 Z-score: 90.6 bits: 24.0 E(): 7.6 Smith-Waterman score: 82; 32.394% identity (57.746% similar) in 71 aa overlap (20-88:145-210) 10 20 30 40 FLJ001 KMAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLI--GDRLYSGVL :. .: .: : ::.:. ..:: .: FLJ002 GLTHLAQLSAELLPVFLSEAVGACAVRGLLAGRVPPQG--PWELQGILLLSQNELYRQIL 120 130 140 150 160 170 50 60 70 80 90 100 FLJ001 ITLENCLLPDDKLRFTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLF . .. :::.: : . : .:: . : :.. : :. : FLJ002 LLMH--LLPQDLLLLKPCQSSYCYCQEVLD-RLIQCGLLVAEEVGRAVGDKILAWSLASS 180 190 200 210 220 110 120 130 140 150 160 FLJ001 QRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLD FLJ002 SLPP 230 >>KIAA1787 ( 1564 res) fh19054 (1564 aa) initn: 140 init1: 71 opt: 91 Z-score: 90.3 bits: 26.7 E(): 7.8 Smith-Waterman score: 103; 31.034% identity (75.862% similar) in 58 aa overlap (1-53:2-59) 10 20 30 40 50 FLJ001 KMAAAAAAAGAAGSA---APAAAAGAPGSGGAPSGSQGVLIGDRLY--SGVLITLENCL .:::.....:..:.. .:....: :::..:... :. : .:. .: :..: : KIAA17 AEMAAGSGGSGGSGGGPGPGPGGGGGPSGSGSGPGSNGGLGSGGELHPRTGRLVSLSACG 10 20 30 40 50 60 60 70 80 90 100 110 FLJ001 LPDDKLRFTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTK KIAA17 RTARRQQPGQEFNHGLVLSREPLRDGRVFTVRIDRKVNSWSGSIEIGVTALDPSVLDFPS 70 80 90 100 110 120 >>KIAA1685 ( 1505 res) pf04287 (1505 aa) initn: 89 init1: 89 opt: 89 Z-score: 88.6 bits: 26.4 E(): 9.8 Smith-Waterman score: 89; 50.000% identity (78.125% similar) in 32 aa overlap (4-35:739-770) 10 20 30 FLJ001 KMAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGS : :::.::..:: ::..:. : .:.:. KIAA16 RARFPVSITSPNRTGARTLADIKAKAQLVKAQRAAAAAAAAAAAAASVGGTIPGPGPGGG 710 720 730 740 750 760 40 50 60 70 80 90 FLJ001 QGVLIGDRLYSGVLITLENCLLPDDKLRFTPSMSSGLDTDTETDLRVVGCELIQAAGILL :: KIAA16 QGPGEGGEGQTARGGSPGSDRVSETGKGPTLELAGTGSRGGTRELLPCGPETQPQSETKT 770 780 790 800 810 820 >>KIAA0512 ( 710 res) hf00239 (710 aa) initn: 107 init1: 67 opt: 85 Z-score: 88.2 bits: 25.2 E(): 10 Smith-Waterman score: 85; 46.429% identity (78.571% similar) in 28 aa overlap (3-30:296-323) 10 20 30 FLJ001 KMAAAAAAAGAAGSAAPAAAAGAPGSGGAPSG : : . : .:.:::..:: .::..:.: KIAA05 AAPTEVTEGPGVAAPTKVAEAPGVASPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRT 270 280 290 300 310 320 40 50 60 70 80 90 FLJ001 SQGVLIGDRLYSGVLITLENCLLPDDKLRFTPSMSSGLDTDTETDLRVVGCELIQAAGIL KIAA05 AVVPGTSAAKKATPGAHTGAIPKATSATGAVPKGGGKGVTRSRNGGKGKGKKSKVEVDEL 330 340 350 360 370 380 >>KIAA0719 ( 624 res) hk01141 (624 aa) initn: 90 init1: 84 opt: 84 Z-score: 87.9 bits: 25.0 E(): 11 Smith-Waterman score: 84; 32.558% identity (74.419% similar) in 43 aa overlap (3-45:26-68) 10 20 30 FLJ001 KMAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVL :..:::. ..::.. ......::.:: : . .. KIAA07 LWRSRQTGRRWQRTLVMAASKPVEAAVVAAAVPSSGSGVGGGGTAGPGTGGLPRWQLALA 10 20 30 40 50 60 40 50 60 70 80 90 FLJ001 IGDRLYSGVLITLENCLLPDDKLRFTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQ .: : : KIAA07 VGAPLLLGAGAIYLWSRQQRRREARGRGDASGLKRNSERKTPEGRASPAPGSGHPEGPGA 70 80 90 100 110 120 227 residues in 1 query sequences 2210767 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:44:05 2009 done: Fri Feb 27 10:44:06 2009 Total Scan time: 0.390 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]