hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/shimazu/full/sj/sj01602/interpro/cnk_1/seq.in
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Query:  sj01602  227

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CYCLIN   domain present in cyclins, TFIIB and Retinob    48.1    1.1e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CYCLIN     1/1      84   186 ..     1    90 []    48.1  1.1e-09

Alignments of top-scoring domains:
CYCLIN: domain 1 of 1, from 84 to 186: score 48.1, E = 1.1e-09
                   *->dfLrrvakalnldpetlylAvnlldrfLseykvlkgyspsliAaaal
                        ++  +  l+l++  ++++  l++rf  +++++k +s++++ +a++
     sj01602    84    ELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVK-HSMEHVSMACV 129  

                   ylAsKteeippwtktlfhytgylpp..............elayteeeile
                   +lAsK+ee p+ +++ +++++ l++ ++++++ +   ++ ++  + +i++
     sj01602   130 HLASKIEEAPRRIRDVINVFHRLRQlrdkkkpvpllldqDYVNLKNQIIK 179  

                   mekllle<-*
                    e+ +l+   
     sj01602   180 AERRVLK    186  

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