hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/shimazu/full/sj/sj01602/interpro/cnk_1/seq.in
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Query:  sj01602  227

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Cyclin_N Cyclin, N-terminal domain                        5.4     0.0004   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Cyclin_N   1/1      49   193 ..     1   146 []     5.4   0.0004

Alignments of top-scoring domains:
Cyclin_N: domain 1 of 1, from 49 to 193: score 5.4, E = 0.0004
                   *->diyaylrelEeeflplpppdyldqqpqpdsiditpkmRaiLidWLve
                         + l+  ++ +  + p+   + ++     d +   R   +  +  
     sj01602    49    TLENCLLPDDKLR--FTPSMSSGLDT-----DTETDLRVVGCELIQA 88   

                   VhekfkLspeTLyLavnylDRFLskkkfpklkvkrkklQLvgvtclfiAs
                    +  ++L +    +   ++ RF  +k+f    v +  +  v+ +c+++As
     sj01602    89 AGILLRLPQVAMATGQVLFQRFFYTKSF----V-KHSMEHVSMACVHLAS 133  

                   KyEEiksdvypPsvkdfvyita.................sDnqaytkkei
                   K+EE      p  + d++ + ++ ++ ++++++ +   + D+ +  k +i
     sj01602   134 KIEEA-----PRRIRDVINVFHrlrqlrdkkkpvpllldQDY-VNLKNQI 177  

                   lrMEkliLktLkfdls<-*
                   +++E+ +Lk L+f ++   
     sj01602   178 IKAERRVLKELGFCVH    193  

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