hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/shimazu/full/sj/sj00758/interpro/cnk_1/seq.in
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Query:  sj00758  1516

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       Protein kinase C conserved region 2 (CalB)     160.3    1.9e-43   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/4     701   809 ..     1    92 []    69.1  5.7e-16
C2         2/4     886   985 ..     1    92 []     7.3       12
C2         3/4    1127  1226 ..     1    92 []    54.9    1e-11
C2         4/4    1360  1489 ..     1    92 []    29.1  0.00061

Alignments of top-scoring domains:
C2: domain 1 of 4, from 701 to 809: score 69.1, E = 5.7e-16
                   *->tLtvkiisArnLp........DPYVkvs......kTkvvkktlsgfN
                       L++++++Ar+L   ++++ +DPY++vs  ++++kT vvk+tl   N
     sj00758   701    HLRCYMYQARDLAamdkdsfsDPYAIVSflhqsqKTVVVKNTL---N 744  

                   PvWnEesetFeFevpp............s.LeieVyDk......dfiGrv
                   P+W++   t+ F+ ++  +++ +  +++ ++++e+yD+++ + ++f+Gr+
     sj00758   745 PTWDQ---TLIFYEIEifgepatvaeqpPsIVVELYDHdtygadEFMGRC 791  

                   tippnnahqhsadglihlsell.ggrh.kl<-*
                   ++ p             l+++++  + +     
     sj00758   792 ICQPS------------LERMPrLAWFpLT    809  

C2: domain 2 of 4, from 886 to 985: score 7.3, E = 12
                   *->tLtvkiisArnLp...DPYVkvs......kTkvvkktlsgfNPvWnE
                         ++ ++  +L + + P  +v+ ++++ ++ v+++  +  NP ++ 
     sj00758   886    AWGLRNMKSYQLAnisSPSLVVEcggqtvQSCVIRNLRK--NPNFDI 930  

                   esetFeFevpp.......s.LeieVyDk......dfiGrvtippnnahqh
                     +t+++ev  ++++    +++++V D +  +++ ++G++ti++      
     sj00758   931 --CTLFMEVMLpreelycPpITVKVIDNrqfgrrPVVGQCTIRS------ 972  

                   sadglihlsell.ggrh.kl<-*
                          l++ l  + + +    
     sj00758   973 -------LESFLcDPYSaES    985  

C2: domain 3 of 4, from 1127 to 1226: score 54.9, E = 1e-11
                   *->tLtvkiisArnLp........DPYVkvs........kTkvvkktlsg
                      +++++i++A +L +++++++ DPY+k+s ++++ +++ + +++tl  
     sj00758  1127    LVRIYIVRAFGLQpkdpngkcDPYIKISigkksvsdQDNYIPCTL-- 1171 

                   fNPvWnEesetFeFevpp...s.LeieVyDk......dfiGrvtippnna
                     Pv++    +Fe++++ + +++L+i++yD++  ++++ iG+++++    
     sj00758  1172 -EPVFGK---MFELTCTLpleKdLKITLYDYdllskdEKIGETVVD---- 1213 

                   hqhsadglihlsell.ggrh.kl<-*
                             l+  l +    ++   
     sj00758  1214 ----------LENRLlSKFGaRC    1226 

C2: domain 4 of 4, from 1360 to 1489: score 29.1, E = 0.00061
                   *->tLtvkiisArnLp............DPYVkvs.........kTkvvk
                       L++ i   r+ + ++ + ++ + +D YVk +  +   +++kT v+ 
     sj00758  1360    FLRCIIWNTRDVIlddlsltgekmsDIYVKGWmigfeehkqKTDVHY 1406 

                   ktls.gfNPvWnEesetFeFevpp........................s.
                   ++l +  N  W      F F+  p ++  +  +++   + ++++++ +++
     sj00758  1407 RSLGgEGNFNWRF---IFPFDYLPaeqvctiakkdafwrldkteskipAr 1453 

                   LeieVyDk......dfiGrvtippnnahqhsadglihlsell.ggrh.kl
                   ++++++D ++ + +df+G ++++              l++++++  +++ 
     sj00758  1454 VVFQIWDNdkfsfdDFLGSLQLD--------------LNRMPsSASSsRP 1489 

                   <-*
                      
     sj00758     -     -    

//