hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/shimazu/full/sj/sj00758/interpro/cnk_1/seq.in
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Query:  sj00758  1516

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       C2 domain                                      180.2    3.3e-50   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/4     702   792 ..     1    88 []    88.7  1.2e-22
C2         2/4     882   969 ..     1    88 []    14.4    0.067
C2         3/4    1128  1211 ..     1    88 []    76.5  5.5e-19
C2         4/4    1361  1474 ..     1    88 []     0.7     0.99

Alignments of top-scoring domains:
C2: domain 1 of 4, from 702 to 792: score 88.7, E = 1.2e-22
                   *->LrVtvieAknLppkDfkngksDPYVkvslggdkkdqkkkTkvikktl
                      Lr++ ++A++L+++D k + sDPY+ vs++     q +kT v+k+tl
     sj00758   702    LRCYMYQARDLAAMD-KDSFSDPYAIVSFLH----QSQKTVVVKNTL 743  

                   NPvWNEtFtFe.v....pppdlqe...tLeieVyDydrfgrddflGevs<
                   NP+W++t+ F++++  + p++++e+++++++e+yD+d++g d+f+G+++ 
     sj00758   744 NPTWDQTLIFYeIeifgEPATVAEqppSIVVELYDHDTYGADEFMGRCI  792  

                   -*
                     
     sj00758     -    -    

C2: domain 2 of 4, from 882 to 969: score 14.4, E = 0.067
                   *->LrVtvieAknLppkDfkngksDPYVkvslggdkkdqkkkTkvikkt.
                      +++     +n +  + +   s+P  +v++gg    q++++ vi++ +
     sj00758   882    IEILAWGLRNMKSYQ-LANISSPSLVVECGG----QTVQSCVIRNLr 923  

                   lNPvWN.....EtFtFevpppdlqe.tLeieVyDydrfgrddflGevs<-
                    NP ++  +   + +++   ++l +++++++V D++ fgr  ++G+++  
     sj00758   924 KNPNFDictlfMEVMLP--REELYCpPITVKVIDNRQFGRRPVVGQCT   969  

                   *
                    
     sj00758     -   -    

C2: domain 3 of 4, from 1128 to 1211: score 76.5, E = 5.5e-19
                   *->LrVtvieAknLppkDfkngksDPYVkvslggdkkd.qkkkTkvikkt
                      +r+++++A +L pkD +ngk+DPY k+s+g+   ++   +   i+ t
     sj00758  1128    VRIYIVRAFGLQPKD-PNGKCDPYIKISIGK---KsVSDQDNYIPCT 1170 

                   lNPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-*
                   l Pv+  +F++  ++p   + L+i++yDyd +++d+ +Ge++   
     sj00758  1171 LEPVFGKMFELTCTLPLEKD-LKITLYDYDLLSKDEKIGETV    1211 

C2: domain 4 of 4, from 1361 to 1474: score 0.7, E = 0.99
                   *->LrVtvieAknLppkDf..kng..ksDPYVkvslggdkkdqkkkTkvi
                      Lr+ +   ++ +  D+ +++g++ sD YVk ++ g +  +k+kT v+
     sj00758  1361    LRCIIWNTRDVIL-DDlsLTGekMSDIYVKGWMIGFEE-HKQKTDVH 1405 

                   kktl....NPvWNEtFtFe.vpppdl....................qetL
                    ++l++++N  W   F F+ +p +++ +  +++   + ++++++ +++ +
     sj00758  1406 YRSLggegNFNWRFIFPFDyLPAEQVctiakkdafwrldkteskipAR-V 1454 

                   eieVyDydrfgrddflGevs<-*
                   +++++D+d+f+ ddflG  +   
     sj00758  1455 VFQIWDNDKFSFDDFLGSLQ    1474 

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