# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sh08074.fasta.nr -Q ../query/FLJ00377.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00377, 190 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7824404 sequences Expectation_n fit: rho(ln(x))= 4.4902+/-0.00018; mu= 10.7625+/- 0.010 mean_var=59.5938+/-11.608, 0's: 43 Z-trim: 64 B-trim: 38 in 1/67 Lambda= 0.166140 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|21748600|dbj|BAC03437.1| FLJ00377 protein [Homo ( 190) 1343 329.6 1.6e-88 gi|109004973|ref|XP_001113894.1| PREDICTED: simila ( 182) 1196 294.4 6.5e-78 gi|119627104|gb|EAX06699.1| hCG33705 [Homo sapiens ( 245) 1184 291.6 5.9e-77 gi|114556736|ref|XP_513422.2| PREDICTED: similar t ( 314) 1184 291.7 7.1e-77 gi|189030823|sp|Q6IPT4.2|NB5R5_HUMAN RecName: Full ( 314) 1184 291.7 7.1e-77 gi|134133308|ref|NP_001026842.2| cytochrome b5 red ( 315) 1184 291.7 7.1e-77 gi|109004976|ref|XP_001113923.1| PREDICTED: simila ( 167) 1103 272.1 3.1e-71 gi|73956430|ref|XP_853222.1| PREDICTED: similar to ( 314) 1038 256.7 2.4e-66 gi|194207425|ref|XP_001492815.2| PREDICTED: simila ( 313) 1036 256.2 3.4e-66 gi|27696204|gb|AAH43687.1| RIKEN cDNA 2810410C14 g ( 256) 1005 248.7 5e-64 gi|148698846|gb|EDL30793.1| RIKEN cDNA 2810410C14, ( 265) 1005 248.8 5.2e-64 gi|189030820|sp|B1AS42.1|NB5R5_MOUSE RecName: Full ( 316) 1005 248.8 5.9e-64 gi|118094692|ref|XP_001235464.1| PREDICTED: simila ( 308) 846 210.7 1.7e-52 gi|126540921|emb|CAM46301.1| novel protein (281041 ( 281) 788 196.8 2.5e-48 gi|13435789|gb|AAH04750.1| 2810410C14Rik protein [ ( 287) 788 196.8 2.5e-48 gi|149035770|gb|EDL90451.1| rCG50164, isoform CRA_ ( 280) 776 193.9 1.8e-47 gi|109476948|ref|XP_001065840.1| PREDICTED: simila ( 313) 776 193.9 1.9e-47 gi|109475224|ref|XP_001069267.1| PREDICTED: simila ( 313) 776 193.9 1.9e-47 gi|149035769|gb|EDL90450.1| rCG50164, isoform CRA_ ( 268) 642 161.8 8.1e-38 gi|60360190|dbj|BAD90340.1| mFLJ00377 protein [Mus ( 226) 640 161.2 9.9e-38 gi|148698844|gb|EDL30791.1| RIKEN cDNA 2810410C14, ( 260) 632 159.3 4.2e-37 gi|220675587|emb|CAX13283.1| novel protein [Homo s ( 247) 501 127.9 1.1e-27 gi|109004970|ref|XP_001113872.1| PREDICTED: simila ( 246) 479 122.7 4.4e-26 gi|190582065|gb|EDV22139.1| hypothetical protein T ( 297) 427 110.3 2.8e-22 gi|156205932|gb|EDO28600.1| predicted protein [Nem ( 306) 416 107.6 1.8e-21 gi|126540922|emb|CAM46302.1| novel protein (281041 ( 181) 405 104.8 7.6e-21 gi|126343404|ref|XP_001380933.1| PREDICTED: simila ( 270) 369 96.3 4.1e-18 gi|215499317|gb|EEC08811.1| conserved hypothetical ( 229) 357 93.4 2.6e-17 gi|210086994|gb|EEA35388.1| hypothetical protein B ( 248) 352 92.2 6.4e-17 gi|149447550|ref|XP_001521004.1| PREDICTED: hypoth ( 90) 333 87.3 7.1e-16 gi|156537135|ref|XP_001603423.1| PREDICTED: hypoth ( 295) 287 76.7 3.6e-12 gi|146387239|pdb|2EIX|A Chain A, The Structure Of ( 243) 262 70.6 2e-10 gi|100811431|dbj|BAE94684.1| NADH-cytochrome b5 re ( 281) 262 70.7 2.2e-10 gi|60466723|gb|EAL64774.1| hypothetical protein DD ( 286) 259 70.0 3.7e-10 gi|108870356|gb|EAT34581.1| conserved hypothetical ( 343) 256 69.3 6.9e-10 gi|157357601|emb|CAO64574.1| unnamed protein produ ( 225) 254 68.7 7e-10 gi|212511094|gb|EEB14127.1| conserved hypothetical ( 325) 255 69.1 7.8e-10 gi|151554187|gb|AAI49173.1| LOC526748 protein [Bos ( 195) 248 67.2 1.7e-09 gi|222864444|gb|EEF01575.1| predicted protein [Pop ( 280) 248 67.3 2.2e-09 gi|189238276|ref|XP_001808476.1| PREDICTED: simila ( 289) 244 66.4 4.5e-09 gi|115687247|ref|XP_001197945.1| PREDICTED: simila ( 132) 240 65.1 4.8e-09 gi|118481576|gb|ABK92730.1| unknown [Populus trich ( 198) 238 64.8 9.1e-09 gi|126091325|gb|ABN66098.1| NADH-cytochrome b-5 re ( 296) 239 65.2 1e-08 gi|222837605|gb|EEE75970.1| predicted protein [Pop ( 278) 238 64.9 1.2e-08 gi|158275735|gb|EDP01511.1| NADH-cytochrome b5 red ( 280) 237 64.7 1.4e-08 gi|49524383|emb|CAG57980.1| unnamed protein produc ( 312) 235 64.3 2.1e-08 gi|187609761|sp|B0CQN7.1|NCB5R_LACBS RecName: Full ( 308) 234 64.0 2.5e-08 gi|116510000|gb|EAU92895.1| hypothetical protein C ( 361) 234 64.1 2.8e-08 gi|149390741|gb|ABR25388.1| NADH cytochrome b5 red ( 169) 227 62.1 5e-08 gi|162675062|gb|EDQ61562.1| predicted protein [Phy ( 281) 228 62.5 6.2e-08 >>gi|21748600|dbj|BAC03437.1| FLJ00377 protein [Homo sap (190 aa) initn: 1343 init1: 1343 opt: 1343 Z-score: 1745.2 bits: 329.6 E(): 1.6e-88 Smith-Waterman score: 1343; 100.000% identity (100.000% similar) in 190 aa overlap (1-190:1-190) 10 20 30 40 50 60 FLJ003 SGLCWQHVPVPLTSPCVCFQCYQMGLMSRYVESWRVGDTAFWRGPFGDFFYKPNQYGELL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 SGLCWQHVPVPLTSPCVCFQCYQMGLMSRYVESWRVGDTAFWRGPFGDFFYKPNQYGELL 10 20 30 40 50 60 70 80 90 100 110 120 FLJ003 LLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFESIYLKTFLQEQARFWNVRTFFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 LLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFESIYLKTFLQEQARFWNVRTFFV 70 80 90 100 110 120 130 140 150 160 170 180 FLJ003 LSQESSSEQLPWSYQEKTHFGHLGQDLIKELVSCCRRKPFALVCGSAEFTKDIARCLLCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 LSQESSSEQLPWSYQEKTHFGHLGQDLIKELVSCCRRKPFALVCGSAEFTKDIARCLLCA 130 140 150 160 170 180 190 FLJ003 GLTEDSYFLF :::::::::: gi|217 GLTEDSYFLF 190 >>gi|109004973|ref|XP_001113894.1| PREDICTED: similar to (182 aa) initn: 1196 init1: 1196 opt: 1196 Z-score: 1555.1 bits: 294.4 E(): 6.5e-78 Smith-Waterman score: 1196; 95.531% identity (98.883% similar) in 179 aa overlap (12-190:4-182) 10 20 30 40 50 60 FLJ003 SGLCWQHVPVPLTSPCVCFQCYQMGLMSRYVESWRVGDTAFWRGPFGDFFYKPNQYGELL : ::::::::::::::::::::::.:::::::::::::::::::::::: gi|109 MYLLMSPCVCFQCYQMGLMSRYVESWRAGDTAFWRGPFGDFFYKPNQYGELL 10 20 30 40 50 70 80 90 100 110 120 FLJ003 LLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFESIYLKTFLQEQARFWNVRTFFV .:::::::::::::::::::::.::::::::::::::::::::::::::: ::::::::: gi|109 MLAAGTGLAPMVPILQSITDNEDDETFVTLVGCFKTFESIYLKTFLQEQACFWNVRTFFV 60 70 80 90 100 110 130 140 150 160 170 180 FLJ003 LSQESSSEQLPWSYQEKTHFGHLGQDLIKELVSCCRRKPFALVCGSAEFTKDIARCLLCA ::::::::::::::::::.::.:::::::::::::::::::::::::::.:::::::::: gi|109 LSQESSSEQLPWSYQEKTRFGRLGQDLIKELVSCCRRKPFALVCGSAEFNKDIARCLLCA 120 130 140 150 160 170 190 FLJ003 GLTEDSYFLF :::::::::: gi|109 GLTEDSYFLF 180 >>gi|119627104|gb|EAX06699.1| hCG33705 [Homo sapiens] (245 aa) initn: 1184 init1: 1184 opt: 1184 Z-score: 1537.8 bits: 291.6 E(): 5.9e-77 Smith-Waterman score: 1184; 98.276% identity (99.425% similar) in 174 aa overlap (17-190:72-245) 10 20 30 40 FLJ003 SGLCWQHVPVPLTSPCVCFQCYQMGLMSRYVESWRVGDTAFWRGPF : ..:::::::::::::::::::::::::: gi|119 RDLARGIVDDLEIQRAYTPISPANAEGYFEVLIKCYQMGLMSRYVESWRVGDTAFWRGPF 50 60 70 80 90 100 50 60 70 80 90 100 FLJ003 GDFFYKPNQYGELLLLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFESIYLKTFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GDFFYKPNQYGELLLLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFESIYLKTFL 110 120 130 140 150 160 110 120 130 140 150 160 FLJ003 QEQARFWNVRTFFVLSQESSSEQLPWSYQEKTHFGHLGQDLIKELVSCCRRKPFALVCGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QEQARFWNVRTFFVLSQESSSEQLPWSYQEKTHFGHLGQDLIKELVSCCRRKPFALVCGS 170 180 190 200 210 220 170 180 190 FLJ003 AEFTKDIARCLLCAGLTEDSYFLF :::::::::::::::::::::::: gi|119 AEFTKDIARCLLCAGLTEDSYFLF 230 240 >>gi|114556736|ref|XP_513422.2| PREDICTED: similar to RI (314 aa) initn: 1184 init1: 1184 opt: 1184 Z-score: 1536.4 bits: 291.7 E(): 7.1e-77 Smith-Waterman score: 1184; 98.276% identity (99.425% similar) in 174 aa overlap (17-190:141-314) 10 20 30 40 FLJ003 SGLCWQHVPVPLTSPCVCFQCYQMGLMSRYVESWRVGDTAFWRGPF : ..:::::::::::::::::::::::::: gi|114 HLILRGIVDDLEIQRAYTPISPANAEGYFEVLIKCYQMGLMSRYVESWRVGDTAFWRGPF 120 130 140 150 160 170 50 60 70 80 90 100 FLJ003 GDFFYKPNQYGELLLLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFESIYLKTFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GDFFYKPNQYGELLLLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFESIYLKTFL 180 190 200 210 220 230 110 120 130 140 150 160 FLJ003 QEQARFWNVRTFFVLSQESSSEQLPWSYQEKTHFGHLGQDLIKELVSCCRRKPFALVCGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 QEQARFWNVRTFFVLSQESSSEQLPWSYQEKTHFGHLGQDLIKELVSCCRRKPFALVCGS 240 250 260 270 280 290 170 180 190 FLJ003 AEFTKDIARCLLCAGLTEDSYFLF :::::::::::::::::::::::: gi|114 AEFTKDIARCLLCAGLTEDSYFLF 300 310 >>gi|189030823|sp|Q6IPT4.2|NB5R5_HUMAN RecName: Full=Pro (314 aa) initn: 1184 init1: 1184 opt: 1184 Z-score: 1536.4 bits: 291.7 E(): 7.1e-77 Smith-Waterman score: 1184; 98.276% identity (99.425% similar) in 174 aa overlap (17-190:141-314) 10 20 30 40 FLJ003 SGLCWQHVPVPLTSPCVCFQCYQMGLMSRYVESWRVGDTAFWRGPF : ..:::::::::::::::::::::::::: gi|189 HLILRGIVDDLEIQRAYTPISPANAEGYFEVLIKCYQMGLMSRYVESWRVGDTAFWRGPF 120 130 140 150 160 170 50 60 70 80 90 100 FLJ003 GDFFYKPNQYGELLLLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFESIYLKTFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 GDFFYKPNQYGELLLLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFESIYLKTFL 180 190 200 210 220 230 110 120 130 140 150 160 FLJ003 QEQARFWNVRTFFVLSQESSSEQLPWSYQEKTHFGHLGQDLIKELVSCCRRKPFALVCGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 QEQARFWNVRTFFVLSQESSSEQLPWSYQEKTHFGHLGQDLIKELVSCCRRKPFALVCGS 240 250 260 270 280 290 170 180 190 FLJ003 AEFTKDIARCLLCAGLTEDSYFLF :::::::::::::::::::::::: gi|189 AEFTKDIARCLLCAGLTEDSYFLF 300 310 >>gi|134133308|ref|NP_001026842.2| cytochrome b5 reducta (315 aa) initn: 1184 init1: 1184 opt: 1184 Z-score: 1536.3 bits: 291.7 E(): 7.1e-77 Smith-Waterman score: 1184; 98.276% identity (99.425% similar) in 174 aa overlap (17-190:142-315) 10 20 30 40 FLJ003 SGLCWQHVPVPLTSPCVCFQCYQMGLMSRYVESWRVGDTAFWRGPF : ..:::::::::::::::::::::::::: gi|134 HLILRGIVDDLEIQRAYTPISPANAEGYFEVLIKCYQMGLMSRYVESWRVGDTAFWRGPF 120 130 140 150 160 170 50 60 70 80 90 100 FLJ003 GDFFYKPNQYGELLLLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFESIYLKTFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 GDFFYKPNQYGELLLLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFESIYLKTFL 180 190 200 210 220 230 110 120 130 140 150 160 FLJ003 QEQARFWNVRTFFVLSQESSSEQLPWSYQEKTHFGHLGQDLIKELVSCCRRKPFALVCGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 QEQARFWNVRTFFVLSQESSSEQLPWSYQEKTHFGHLGQDLIKELVSCCRRKPFALVCGS 240 250 260 270 280 290 170 180 190 FLJ003 AEFTKDIARCLLCAGLTEDSYFLF :::::::::::::::::::::::: gi|134 AEFTKDIARCLLCAGLTEDSYFLF 300 310 >>gi|109004976|ref|XP_001113923.1| PREDICTED: similar to (167 aa) initn: 1103 init1: 1103 opt: 1103 Z-score: 1435.1 bits: 272.1 E(): 3.1e-71 Smith-Waterman score: 1103; 95.808% identity (99.401% similar) in 167 aa overlap (24-190:1-167) 10 20 30 40 50 60 FLJ003 SGLCWQHVPVPLTSPCVCFQCYQMGLMSRYVESWRVGDTAFWRGPFGDFFYKPNQYGELL ::::::::::::.:::::::::::::::::::::::: gi|109 MGLMSRYVESWRAGDTAFWRGPFGDFFYKPNQYGELL 10 20 30 70 80 90 100 110 120 FLJ003 LLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFESIYLKTFLQEQARFWNVRTFFV .:::::::::::::::::::::.::::::::::::::::::::::::::: ::::::::: gi|109 MLAAGTGLAPMVPILQSITDNEDDETFVTLVGCFKTFESIYLKTFLQEQACFWNVRTFFV 40 50 60 70 80 90 130 140 150 160 170 180 FLJ003 LSQESSSEQLPWSYQEKTHFGHLGQDLIKELVSCCRRKPFALVCGSAEFTKDIARCLLCA ::::::::::::::::::.::.:::::::::::::::::::::::::::.:::::::::: gi|109 LSQESSSEQLPWSYQEKTRFGRLGQDLIKELVSCCRRKPFALVCGSAEFNKDIARCLLCA 100 110 120 130 140 150 190 FLJ003 GLTEDSYFLF :::::::::: gi|109 GLTEDSYFLF 160 >>gi|73956430|ref|XP_853222.1| PREDICTED: similar to cyt (314 aa) initn: 1038 init1: 1038 opt: 1038 Z-score: 1347.2 bits: 256.7 E(): 2.4e-66 Smith-Waterman score: 1038; 84.483% identity (96.552% similar) in 174 aa overlap (17-190:141-314) 10 20 30 40 FLJ003 SGLCWQHVPVPLTSPCVCFQCYQMGLMSRYVESWRVGDTAFWRGPF : ..::. :::::::.:: .:::.:::::: gi|739 HLILRGKVDDLEIQRAYTPISPANAEGYFEVLIKCYETGLMSRYVKSWSTGDTTFWRGPF 120 130 140 150 160 170 50 60 70 80 90 100 FLJ003 GDFFYKPNQYGELLLLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFESIYLKTFL :::::::::.::::.::.:::::::::.::::::: .:::::::::::::::.::::::: gi|739 GDFFYKPNQHGELLMLASGTGLAPMVPVLQSITDNAEDETFVTLVGCFKTFEGIYLKTFL 180 190 200 210 220 230 110 120 130 140 150 160 FLJ003 QEQARFWNVRTFFVLSQESSSEQLPWSYQEKTHFGHLGQDLIKELVSCCRRKPFALVCGS ::::::::::::::::::.: :.:::::.:::.::.:.::::.:::: :::::::::::: gi|739 QEQARFWNVRTFFVLSQENSLEKLPWSYREKTRFGRLAQDLIEELVSSCRRKPFALVCGS 240 250 260 270 280 290 170 180 190 FLJ003 AEFTKDIARCLLCAGLTEDSYFLF ::::::.:::::::::.::::::: gi|739 AEFTKDMARCLLCAGLAEDSYFLF 300 310 >>gi|194207425|ref|XP_001492815.2| PREDICTED: similar to (313 aa) initn: 1036 init1: 1036 opt: 1036 Z-score: 1344.7 bits: 256.2 E(): 3.4e-66 Smith-Waterman score: 1036; 86.207% identity (95.402% similar) in 174 aa overlap (17-190:140-313) 10 20 30 40 FLJ003 SGLCWQHVPVPLTSPCVCFQCYQMGLMSRYVESWRVGDTAFWRGPF : ..::: ::::.::::::.:::::::::: gi|194 HLILRGIVNDLEVQRAYTPISPANAEGYFEVLIKCYQTGLMSQYVESWRAGDTAFWRGPF 110 120 130 140 150 160 50 60 70 80 90 100 FLJ003 GDFFYKPNQYGELLLLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFESIYLKTFL : :::.::::::::.:::::::::::::::::::: .:::::::::::::::.::::::: gi|194 GGFFYQPNQYGELLMLAAGTGLAPMVPILQSITDNADDETFVTLVGCFKTFEGIYLKTFL 170 180 190 200 210 220 110 120 130 140 150 160 FLJ003 QEQARFWNVRTFFVLSQESSSEQLPWSYQEKTHFGHLGQDLIKELVSCCRRKPFALVCGS :::::::::::::::::::: :::::::.:::.::.:.::::.:::. :::::::::::: gi|194 QEQARFWNVRTFFVLSQESSPEQLPWSYREKTRFGRLAQDLIEELVGSCRRKPFALVCGS 230 240 250 260 270 280 170 180 190 FLJ003 AEFTKDIARCLLCAGLTEDSYFLF ::::::.: ::: :::.::::::: gi|194 AEFTKDMASCLLRAGLAEDSYFLF 290 300 310 >>gi|27696204|gb|AAH43687.1| RIKEN cDNA 2810410C14 gene (256 aa) initn: 1004 init1: 1004 opt: 1005 Z-score: 1305.7 bits: 248.7 E(): 5e-64 Smith-Waterman score: 1005; 76.064% identity (92.553% similar) in 188 aa overlap (7-190:69-256) 10 20 30 FLJ003 SGLCWQHVPV-PLTSPC---VCFQCYQMGLMSRYVE ..:. :.:. : ..::. ::::.::: gi|276 TLPGNSRLGLRPGQHLILRGVVDGLEIQRAYTPISPVTAEGYFDVLIKCYRTGLMSQYVE 40 50 60 70 80 90 40 50 60 70 80 90 FLJ003 SWRVGDTAFWRGPFGDFFYKPNQYGELLLLAAGTGLAPMVPILQSITDNENDETFVTLVG :::.:::::::::::.:.:.:..:::::.:::::::::::::::::::.:.::::::::: gi|276 SWRTGDTAFWRGPFGSFLYEPKKYGELLMLAAGTGLAPMVPILQSITDDEDDETFVTLVG 100 110 120 130 140 150 100 110 120 130 140 150 FLJ003 CFKTFESIYLKTFLQEQARFWNVRTFFVLSQESSSEQLPWSYQEKTHFGHLGQDLIKELV ::::::.::::::.:::::::::.:::::::: : :::::::..:::::.:::.:. ::: gi|276 CFKTFEGIYLKTFFQEQARFWNVQTFFVLSQEVSPEQLPWSYRDKTHFGRLGQELVAELV 160 170 180 190 200 210 160 170 180 190 FLJ003 SCCRRKPFALVCGSAEFTKDIARCLLCAGLTEDSYFLF .:::::::.::::: :..:.::::: ::::::::::: gi|276 ACCRRKPFTLVCGSPAFNEDMARCLLSAGLTEDSYFLF 220 230 240 250 190 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 23:02:33 2009 done: Fri Feb 27 23:07:03 2009 Total Scan time: 647.170 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]