# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh08074.fasta.huge -Q ../query/FLJ00377.ptfa ./tmplib.10216 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
FLJ00377, 190 aa
vs ./tmplib.10216 library
2210804 residues in 2457 sequences
Expectation_n fit: rho(ln(x))= 4.1057+/-0.0034; mu= 13.5126+/- 0.230
mean_var=64.7544+/-14.268, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40
Lambda= 0.159382
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 36, opt: 24, open/ext: -10/-2, width: 16
The best scores are: opt bits E(2457)
KIAA0054 ( 1943 res) ha00503s1 (1943) 91 30.0 0.85
KIAA0980 ( 1406 res) hj07083 (1406) 84 28.2 2.1
KIAA1565 ( 1313 res) bf00184 (1313) 83 28.0 2.3
FLJ00129 ( 668 res) sh01893 ( 668) 76 26.0 4.6
FLJ00142 ( 674 res) sh04107 ( 674) 76 26.0 4.6
KIAA0287 ( 1523 res) fg06332 (1523) 78 26.9 5.7
KIAA0163 ( 550 res) ha01059 ( 550) 72 25.0 7.7
KIAA0015 ( 480 res) ha00478 ( 480) 71 24.7 8.2
KIAA1354 ( 632 res) fj01502 ( 632) 72 25.1 8.4
KIAA1309 ( 639 res) fh10381 ( 639) 72 25.1 8.5
KIAA0256 ( 1065 res) eg00512 (1065) 74 25.8 8.6
KIAA0749 ( 678 res) hk04328 ( 678) 72 25.1 8.8
KIAA0304 ( 2415 res) af07172 (2415) 77 26.9 9.1
KIAA0511 ( 933 res) he00818 ( 933) 73 25.5 9.2
KIAA0319 ( 1109 res) hg00378 (1109) 73 25.6 10
KIAA0836 ( 609 res) hj06165 ( 609) 70 24.6 11
KIAA0815 ( 1640 res) sh06087 (1640) 74 26.0 11
KIAA1119 ( 1854 res) hf00569y1 (1854) 74 26.1 12
KIAA1323 ( 396 res) fh13878 ( 396) 67 23.7 14
KIAA1478 ( 570 res) fj05212 ( 570) 68 24.1 15
FLJ00319 ( 456 res) sh07415 ( 456) 67 23.8 15
KIAA1170 ( 838 res) hg04224(revised) ( 838) 69 24.5 16
KIAA1059 ( 1297 res) hh12158 (1297) 70 25.0 18
KIAA0806 ( 1073 res) hk04165(revised) (1073) 69 24.6 19
KIAA1666 ( 1003 res) fg02554 (1003) 68 24.4 21
KIAA0971 ( 665 res) hj06832 ( 665) 66 23.7 23
KIAA0505 ( 200 res) hh00043 ( 200) 61 22.0 23
KIAA1333 ( 741 res) fh15412 ( 741) 66 23.8 24
KIAA0898 ( 979 res) hk09541 ( 979) 67 24.1 25
KIAA0137 ( 801 res) ha02915s1 ( 801) 66 23.8 25
KIAA1040 ( 1736 res) hh15271 (1736) 69 24.9 26
KIAA0513 ( 412 res) hf00293 ( 412) 63 22.8 26
KIAA0880 ( 727 res) hk07457 ( 727) 65 23.5 28
KIAA0371 ( 1203 res) hh00252 (1203) 67 24.2 28
KIAA0542 ( 1212 res) hg04325s1 (1212) 67 24.2 28
KIAA1272 ( 1023 res) hk07611 (1023) 66 23.9 30
FLJ00048 ( 146 res) as00048 ( 146) 58 21.1 30
KIAA0937 ( 653 res) hh04715 ( 653) 64 23.2 31
KIAA0559 ( 1212 res) hh01510 (1212) 66 24.0 33
KIAA1440 ( 1377 res) hg02441b (1377) 66 24.1 36
KIAA0979 ( 1483 res) hj07056s1 (1483) 66 24.1 38
KIAA0412 ( 720 res) hg03242 ( 720) 63 23.1 38
KIAA0632 ( 727 res) hh01900 ( 727) 63 23.1 38
KIAA1854 ( 572 res) fg02232 ( 572) 62 22.7 38
KIAA0743 ( 1205 res) hk04080 (1205) 65 23.8 39
KIAA1249 ( 949 res) hh04184 ( 949) 64 23.4 39
KIAA2034 ( 1571 res) ah04445 (1571) 66 24.1 39
KIAA0526 ( 609 res) hg02163 ( 609) 62 22.7 40
KIAA0703 ( 1051 res) hg02861(revised) (1051) 64 23.5 42
KIAA0124 ( 682 res) ha01534 ( 682) 62 22.8 43
>>KIAA0054 ( 1943 res) ha00503s1 (1943 aa)
initn: 77 init1: 52 opt: 91 Z-score: 107.7 bits: 30.0 E(): 0.85
Smith-Waterman score: 91; 34.615% identity (57.692% similar) in 78 aa overlap (73-145:1474-1546)
50 60 70 80 90
FLJ003 RGPFGDFFYKPNQYGELLLLAAGTGLAPMVPILQSITDNENDETFVTL-VGCF--KTFES
::: : .. ::. : .: . :
KIAA00 PPAEAVIPEQQPPPMLQEGHSPLRAIAQPGPILPSHLNSFIDENPSGLPIGEALDRIHGS
1450 1460 1470 1480 1490 1500
100 110 120 130 140 150
FLJ003 IYLKTFLQEQARF--WNVRTFFVLSQESSSEQLPWSYQEKTHFGHLGQDLIKELVSCCRR
. :.:. :.:::: :. . : ::: : .:. .... :. :: :
KIAA00 VALETLRQQQARFQQWSEHHAF-LSQGS----VPYPHHHHPHLQHLPQPPLGLHQPPVRA
1510 1520 1530 1540 1550
160 170 180 190
FLJ003 KPFALVCGSAEFTKDIARCLLCAGLTEDSYFLF
KIAA00 DWKLTSSAEDEVETTYSRFQDLIRELSHRDQSETRELAEMPPPQSRLLQYRQVQSRSPPA
1560 1570 1580 1590 1600 1610
>>KIAA0980 ( 1406 res) hj07083 (1406 aa)
initn: 62 init1: 62 opt: 84 Z-score: 100.6 bits: 28.2 E(): 2.1
Smith-Waterman score: 84; 28.378% identity (63.514% similar) in 74 aa overlap (77-149:1188-1258)
50 60 70 80 90 100
FLJ003 GDFFYKPNQYGELLLLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFESIYLKTFL
: . .:.: ::. ...: . ...
KIAA09 EMEVLNRQNQNYKDQLSQLNVRVLQLGQEASTHQAQNEEHRVTIQMLTQSLEEV-VRSGQ
1160 1170 1180 1190 1200 1210
110 120 130 140 150 160
FLJ003 QEQARFWNVRTFF-VLSQESSSEQLPWSYQEKTHFGHLGQDLIKELVSCCRRKPFALVCG
:.. .. ..:. . :.:: .: ::::: : :. . .:: ..
KIAA09 QQSDQIQKLRVELECLNQEHQSLQLPWS--ELTQTLEESQDQVQGAHLRLRQAQAQHLQE
1220 1230 1240 1250 1260 1270
170 180 190
FLJ003 SAEFTKDIARCLLCAGLTEDSYFLF
KIAA09 VRLVPQDRVAELHRLLSLQGEQARRRLDAQREEHEKQLKATEERVEEAEMILKNMEMLLQ
1280 1290 1300 1310 1320 1330
>>KIAA1565 ( 1313 res) bf00184 (1313 aa)
initn: 42 init1: 42 opt: 83 Z-score: 99.7 bits: 28.0 E(): 2.3
Smith-Waterman score: 83; 26.667% identity (50.370% similar) in 135 aa overlap (70-190:159-285)
40 50 60 70 80 90
FLJ003 AFWRGPFGDFFYKPNQYGELLLLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFES
: : ... . :.: . . : . ...
KIAA15 SLEAQPKYVRGGKRYGRRSLPEFQESVEEFPEVTVIEPL-DEEARPSHIPAGDCSEHWKT
130 140 150 160 170 180
100 110 120 130 140
FLJ003 IYLKTFLQE-QARFWNVRTFFVLSQESSSEQLPWSYQEK----------THFGHLGQDLI
. . : : :::: . . :: .:: : .:: :. :::..
KIAA15 QRSEEYEAEGQLRFWNPDDLNA-SQSGSSPPQDW-IEEKLQEVCEDLGITRDGHLNR---
190 200 210 220 230 240
150 160 170 180 190
FLJ003 KELVSCCRRKPFALVCGSAEFTKDIARCLLCAGL--TEDSYF-LF
:.::: :.. . : : :. ... . : : .:: .. ::
KIAA15 KKLVSICEQYGLQNVDG--EMLEEVFHNLDPDGTMSVEDFFYGLFKNGKSLTPSASTPYR
250 260 270 280 290 300
KIAA15 QLKRHLSMQSFDESGRRTTTSSAMTSTIGFRVFSCLDDGMGHASVERILDTWQEEGIENS
310 320 330 340 350 360
>>FLJ00129 ( 668 res) sh01893 (668 aa)
initn: 76 init1: 76 opt: 76 Z-score: 94.5 bits: 26.0 E(): 4.6
Smith-Waterman score: 76; 37.143% identity (65.714% similar) in 35 aa overlap (44-78:472-506)
20 30 40 50 60 70
FLJ003 SPCVCFQCYQMGLMSRYVESWRVGDTAFWRGPFGDFFYKPNQYGELLLLAAGTGLAPMVP
::.: . . .:..:: :..:..
FLJ001 VTMRKSQRSSKGSEILLEKHKFCNIKCYIDGPYGTPTRRIFASEHAVLIGAGIGITPFAS
450 460 470 480 490 500
80 90 100 110 120 130
FLJ003 ILQSITDNENDETFVTLVGCFKTFESIYLKTFLQEQARFWNVRTFFVLSQESSSEQLPWS
:::::
FLJ001 ILQSIMYRHQKRKHTCPSCQHSWIEGVQDNMKLHKVDFIWINRDQRSFEWFVSLLTKLEM
510 520 530 540 550 560
>>FLJ00142 ( 674 res) sh04107 (674 aa)
initn: 76 init1: 76 opt: 76 Z-score: 94.4 bits: 26.0 E(): 4.6
Smith-Waterman score: 76; 37.143% identity (65.714% similar) in 35 aa overlap (44-78:478-512)
20 30 40 50 60 70
FLJ003 SPCVCFQCYQMGLMSRYVESWRVGDTAFWRGPFGDFFYKPNQYGELLLLAAGTGLAPMVP
::.: . . .:..:: :..:..
FLJ001 VTMRKSQRSSKGSEILLEKHKFCNIKCYIDGPYGTPTRRIFASEHAVLIGAGIGITPFAS
450 460 470 480 490 500
80 90 100 110 120 130
FLJ003 ILQSITDNENDETFVTLVGCFKTFESIYLKTFLQEQARFWNVRTFFVLSQESSSEQLPWS
:::::
FLJ001 ILQSIMYRHQKRKHTCPSCQHSWIEGVQDNMKLHKVDFIWINRDQRSFEWFVSLLTKLEM
510 520 530 540 550 560
>>KIAA0287 ( 1523 res) fg06332 (1523 aa)
initn: 120 init1: 65 opt: 78 Z-score: 92.7 bits: 26.9 E(): 5.7
Smith-Waterman score: 78; 25.581% identity (56.977% similar) in 86 aa overlap (103-187:293-374)
80 90 100 110 120 130
FLJ003 PILQSITDNENDETFVTLVGCFKTFESIYLKTFLQEQARFWNV-RTFFVLSQESSSEQLP
.. .:... :. : : ... :..
KIAA02 SGRARESSDRSQRFPRMSDDNWKDISLNKRESVIQQRVYEGNAFRGGFRFNSTLVSRKRV
270 280 290 300 310 320
140 150 160 170 180 190
FLJ003 WSYQEKTHFGHLGQDLIKELVSCCRRKPFALVCGSAEFTKDIARCLLCAGLTEDSYFLF
... :: :. :.. .: :.::: ::: :. : .. : ..:. :.
KIAA02 LERKRRYHFDTDGKGSIHDQKGCPRKKPFE--CGS-EMRKAMSVSSL-SSLSSPSFTESQ
330 340 350 360 370
KIAA02 PIDFGAMPYVCDECGRSFSVISEFVEHQIMHTRENLYEYGESFIHSVAVSEVQKSQVGGK
380 390 400 410 420 430
>>KIAA0163 ( 550 res) ha01059 (550 aa)
initn: 47 init1: 47 opt: 72 Z-score: 90.5 bits: 25.0 E(): 7.7
Smith-Waterman score: 72; 23.664% identity (48.855% similar) in 131 aa overlap (70-190:216-341)
40 50 60 70 80 90
FLJ003 AFWRGPFGDFFYKPNQYGELLLLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFES
: ::. : .:::..: . . ::. : .
KIAA01 VGYQYVITGRNRSLEGRWEVAFKGSSEVFLPPDPIFASAM-SENDNVFCAQLQCFH-FPT
190 200 210 220 230 240
100 110 120 130 140 150
FLJ003 IYLKTFLQEQAR-FWNVRTFFVLSQESSSEQLPWSYQEKTHFGHLGQDLIKELVSC-CRR
. . . . .:. .. .:. ... . .: .: :.: .:: :.
KIAA01 LRHHDLHSWHAESCYEKSSFLCKRSQTCVDIKDNVVDEGFYFTPKGDD---PCLSCTCHG
250 260 270 280 290 300
160 170 180 190
FLJ003 -KP---FALVC----GSAEFTKDIARCLLCAGLTEDSYFLF
.: : .: : .. :: .: : :. ::
KIAA01 GEPEMCVAALCERPQGCQQYRKDPKECCKFMCLDPDGNSLFDSMASGMRLVVSCISSFLI
310 320 330 340 350 360
KIAA01 LSLLLFMVHRLRQRRRERIESLIGANLHHFNLGRRIPGFDYGPDGFGTGLTPLHLSDDGE
370 380 390 400 410 420
>>KIAA0015 ( 480 res) ha00478 (480 aa)
initn: 67 init1: 67 opt: 71 Z-score: 89.9 bits: 24.7 E(): 8.2
Smith-Waterman score: 71; 34.286% identity (54.286% similar) in 35 aa overlap (24-58:332-366)
10 20 30 40 50
FLJ003 SGLCWQHVPVPLTSPCVCFQCYQMGLMSRYVESWRVGDTAFWRGPFGDFFYKP
.: . ... :::. : .:: : ::
KIAA00 QVILVQQGQVVKLMEPHRPERQDEKARIEALGGFVSHMDCWRVNGTLAVSRAIGDVFQKP
310 320 330 340 350 360
60 70 80 90 100 110
FLJ003 NQYGELLLLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFESIYLKTFLQEQARFW
::
KIAA00 YVSGEADAASRALTGSEDYLLLACDGFFDVVPHQEVVGLVQSHLTRQQGSGLRVAEELVA
370 380 390 400 410 420
>>KIAA1354 ( 632 res) fj01502 (632 aa)
initn: 39 init1: 39 opt: 72 Z-score: 89.8 bits: 25.1 E(): 8.4
Smith-Waterman score: 72; 33.803% identity (57.746% similar) in 71 aa overlap (48-113:273-342)
20 30 40 50 60 70
FLJ003 CFQCYQMGLMSRYVESWRVGDTAFWRGPFGDFFYKPNQYGELLLLAAGTGLAP-MVPILQ
::. : .::: :.. . : : :..:
KIAA13 PRMDYAAKLMKNIRFPLMTPQDLINYVQTVDFMRTDNTCVNLLLEASNYQMMPYMQPVMQ
250 260 270 280 290 300
80 90 100 110 120 130
FLJ003 SI-TDNENDET-FVTLVGCFKT--FESIYLKTFLQEQARFWNVRTFFVLSQESSSEQLPW
: : ..: : .::: : .. : :. . .:.:. :
KIAA13 SDRTAIRSDSTHLVTLGGVLRQQLVVSKELRMY-DERAQEWRSLAPMDAPRYQHGIAVIG
310 320 330 340 350 360
140 150 160 170 180 190
FLJ003 SYQEKTHFGHLGQDLIKELVSCCRRKPFALVCGSAEFTKDIARCLLCAGLTEDSYFLF
KIAA13 NFLYVVGGQSNYDTKGKTAVDTVFRFDPRYNKWMQVASLNEKRTFFHLSALKGHLYAVGG
370 380 390 400 410 420
>>KIAA1309 ( 639 res) fh10381 (639 aa)
initn: 39 init1: 39 opt: 72 Z-score: 89.7 bits: 25.1 E(): 8.5
Smith-Waterman score: 72; 33.803% identity (57.746% similar) in 71 aa overlap (48-113:284-353)
20 30 40 50 60 70
FLJ003 CFQCYQMGLMSRYVESWRVGDTAFWRGPFGDFFYKPNQYGELLLLAAGTGLAP-MVPILQ
::. : .::: :.. . : : :..:
KIAA13 PRMDFAAKLMKNIRFPLMTPQELINYVQTVDFMRTDNTCVNLLLEASNYQMMPYMQPVMQ
260 270 280 290 300 310
80 90 100 110 120 130
FLJ003 SI-TDNENDET-FVTLVGCFKT--FESIYLKTFLQEQARFWNVRTFFVLSQESSSEQLPW
: : ..: : .::: : .. : :. . .:.:. :
KIAA13 SDRTAIRSDTTHLVTLGGVLRQQLVVSKELRMY-DEKAHEWKSLAPMDAPRYQHGIAVIG
320 330 340 350 360 370
140 150 160 170 180 190
FLJ003 SYQEKTHFGHLGQDLIKELVSCCRRKPFALVCGSAEFTKDIARCLLCAGLTEDSYFLF
KIAA13 NFLYVVGGQSNYDTKGKTAVDTVFRFDPRYNKWMQVASLNEKRTFFHLSALKGYLYAVGG
380 390 400 410 420 430
190 residues in 1 query sequences
2210804 residues in 2457 library sequences
Tcomplib [34.26] (2 proc)
start: Fri Feb 27 11:02:27 2009 done: Fri Feb 27 11:02:27 2009
Total Scan time: 0.360 Total Display time: 0.040
Function used was FASTA [version 34.26.5 April 26, 2007]