# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh08074.fasta.huge -Q ../query/FLJ00377.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00377, 190 aa vs ./tmplib.10216 library 2210804 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.1057+/-0.0034; mu= 13.5126+/- 0.230 mean_var=64.7544+/-14.268, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.159382 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0054 ( 1943 res) ha00503s1 (1943) 91 30.0 0.85 KIAA0980 ( 1406 res) hj07083 (1406) 84 28.2 2.1 KIAA1565 ( 1313 res) bf00184 (1313) 83 28.0 2.3 FLJ00129 ( 668 res) sh01893 ( 668) 76 26.0 4.6 FLJ00142 ( 674 res) sh04107 ( 674) 76 26.0 4.6 KIAA0287 ( 1523 res) fg06332 (1523) 78 26.9 5.7 KIAA0163 ( 550 res) ha01059 ( 550) 72 25.0 7.7 KIAA0015 ( 480 res) ha00478 ( 480) 71 24.7 8.2 KIAA1354 ( 632 res) fj01502 ( 632) 72 25.1 8.4 KIAA1309 ( 639 res) fh10381 ( 639) 72 25.1 8.5 KIAA0256 ( 1065 res) eg00512 (1065) 74 25.8 8.6 KIAA0749 ( 678 res) hk04328 ( 678) 72 25.1 8.8 KIAA0304 ( 2415 res) af07172 (2415) 77 26.9 9.1 KIAA0511 ( 933 res) he00818 ( 933) 73 25.5 9.2 KIAA0319 ( 1109 res) hg00378 (1109) 73 25.6 10 KIAA0836 ( 609 res) hj06165 ( 609) 70 24.6 11 KIAA0815 ( 1640 res) sh06087 (1640) 74 26.0 11 KIAA1119 ( 1854 res) hf00569y1 (1854) 74 26.1 12 KIAA1323 ( 396 res) fh13878 ( 396) 67 23.7 14 KIAA1478 ( 570 res) fj05212 ( 570) 68 24.1 15 FLJ00319 ( 456 res) sh07415 ( 456) 67 23.8 15 KIAA1170 ( 838 res) hg04224(revised) ( 838) 69 24.5 16 KIAA1059 ( 1297 res) hh12158 (1297) 70 25.0 18 KIAA0806 ( 1073 res) hk04165(revised) (1073) 69 24.6 19 KIAA1666 ( 1003 res) fg02554 (1003) 68 24.4 21 KIAA0971 ( 665 res) hj06832 ( 665) 66 23.7 23 KIAA0505 ( 200 res) hh00043 ( 200) 61 22.0 23 KIAA1333 ( 741 res) fh15412 ( 741) 66 23.8 24 KIAA0898 ( 979 res) hk09541 ( 979) 67 24.1 25 KIAA0137 ( 801 res) ha02915s1 ( 801) 66 23.8 25 KIAA1040 ( 1736 res) hh15271 (1736) 69 24.9 26 KIAA0513 ( 412 res) hf00293 ( 412) 63 22.8 26 KIAA0880 ( 727 res) hk07457 ( 727) 65 23.5 28 KIAA0371 ( 1203 res) hh00252 (1203) 67 24.2 28 KIAA0542 ( 1212 res) hg04325s1 (1212) 67 24.2 28 KIAA1272 ( 1023 res) hk07611 (1023) 66 23.9 30 FLJ00048 ( 146 res) as00048 ( 146) 58 21.1 30 KIAA0937 ( 653 res) hh04715 ( 653) 64 23.2 31 KIAA0559 ( 1212 res) hh01510 (1212) 66 24.0 33 KIAA1440 ( 1377 res) hg02441b (1377) 66 24.1 36 KIAA0979 ( 1483 res) hj07056s1 (1483) 66 24.1 38 KIAA0412 ( 720 res) hg03242 ( 720) 63 23.1 38 KIAA0632 ( 727 res) hh01900 ( 727) 63 23.1 38 KIAA1854 ( 572 res) fg02232 ( 572) 62 22.7 38 KIAA0743 ( 1205 res) hk04080 (1205) 65 23.8 39 KIAA1249 ( 949 res) hh04184 ( 949) 64 23.4 39 KIAA2034 ( 1571 res) ah04445 (1571) 66 24.1 39 KIAA0526 ( 609 res) hg02163 ( 609) 62 22.7 40 KIAA0703 ( 1051 res) hg02861(revised) (1051) 64 23.5 42 KIAA0124 ( 682 res) ha01534 ( 682) 62 22.8 43 >>KIAA0054 ( 1943 res) ha00503s1 (1943 aa) initn: 77 init1: 52 opt: 91 Z-score: 107.7 bits: 30.0 E(): 0.85 Smith-Waterman score: 91; 34.615% identity (57.692% similar) in 78 aa overlap (73-145:1474-1546) 50 60 70 80 90 FLJ003 RGPFGDFFYKPNQYGELLLLAAGTGLAPMVPILQSITDNENDETFVTL-VGCF--KTFES ::: : .. ::. : .: . : KIAA00 PPAEAVIPEQQPPPMLQEGHSPLRAIAQPGPILPSHLNSFIDENPSGLPIGEALDRIHGS 1450 1460 1470 1480 1490 1500 100 110 120 130 140 150 FLJ003 IYLKTFLQEQARF--WNVRTFFVLSQESSSEQLPWSYQEKTHFGHLGQDLIKELVSCCRR . :.:. :.:::: :. . : ::: : .:. .... :. :: : KIAA00 VALETLRQQQARFQQWSEHHAF-LSQGS----VPYPHHHHPHLQHLPQPPLGLHQPPVRA 1510 1520 1530 1540 1550 160 170 180 190 FLJ003 KPFALVCGSAEFTKDIARCLLCAGLTEDSYFLF KIAA00 DWKLTSSAEDEVETTYSRFQDLIRELSHRDQSETRELAEMPPPQSRLLQYRQVQSRSPPA 1560 1570 1580 1590 1600 1610 >>KIAA0980 ( 1406 res) hj07083 (1406 aa) initn: 62 init1: 62 opt: 84 Z-score: 100.6 bits: 28.2 E(): 2.1 Smith-Waterman score: 84; 28.378% identity (63.514% similar) in 74 aa overlap (77-149:1188-1258) 50 60 70 80 90 100 FLJ003 GDFFYKPNQYGELLLLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFESIYLKTFL : . .:.: ::. ...: . ... KIAA09 EMEVLNRQNQNYKDQLSQLNVRVLQLGQEASTHQAQNEEHRVTIQMLTQSLEEV-VRSGQ 1160 1170 1180 1190 1200 1210 110 120 130 140 150 160 FLJ003 QEQARFWNVRTFF-VLSQESSSEQLPWSYQEKTHFGHLGQDLIKELVSCCRRKPFALVCG :.. .. ..:. . :.:: .: ::::: : :. . .:: .. KIAA09 QQSDQIQKLRVELECLNQEHQSLQLPWS--ELTQTLEESQDQVQGAHLRLRQAQAQHLQE 1220 1230 1240 1250 1260 1270 170 180 190 FLJ003 SAEFTKDIARCLLCAGLTEDSYFLF KIAA09 VRLVPQDRVAELHRLLSLQGEQARRRLDAQREEHEKQLKATEERVEEAEMILKNMEMLLQ 1280 1290 1300 1310 1320 1330 >>KIAA1565 ( 1313 res) bf00184 (1313 aa) initn: 42 init1: 42 opt: 83 Z-score: 99.7 bits: 28.0 E(): 2.3 Smith-Waterman score: 83; 26.667% identity (50.370% similar) in 135 aa overlap (70-190:159-285) 40 50 60 70 80 90 FLJ003 AFWRGPFGDFFYKPNQYGELLLLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFES : : ... . :.: . . : . ... KIAA15 SLEAQPKYVRGGKRYGRRSLPEFQESVEEFPEVTVIEPL-DEEARPSHIPAGDCSEHWKT 130 140 150 160 170 180 100 110 120 130 140 FLJ003 IYLKTFLQE-QARFWNVRTFFVLSQESSSEQLPWSYQEK----------THFGHLGQDLI . . : : :::: . . :: .:: : .:: :. :::.. KIAA15 QRSEEYEAEGQLRFWNPDDLNA-SQSGSSPPQDW-IEEKLQEVCEDLGITRDGHLNR--- 190 200 210 220 230 240 150 160 170 180 190 FLJ003 KELVSCCRRKPFALVCGSAEFTKDIARCLLCAGL--TEDSYF-LF :.::: :.. . : : :. ... . : : .:: .. :: KIAA15 KKLVSICEQYGLQNVDG--EMLEEVFHNLDPDGTMSVEDFFYGLFKNGKSLTPSASTPYR 250 260 270 280 290 300 KIAA15 QLKRHLSMQSFDESGRRTTTSSAMTSTIGFRVFSCLDDGMGHASVERILDTWQEEGIENS 310 320 330 340 350 360 >>FLJ00129 ( 668 res) sh01893 (668 aa) initn: 76 init1: 76 opt: 76 Z-score: 94.5 bits: 26.0 E(): 4.6 Smith-Waterman score: 76; 37.143% identity (65.714% similar) in 35 aa overlap (44-78:472-506) 20 30 40 50 60 70 FLJ003 SPCVCFQCYQMGLMSRYVESWRVGDTAFWRGPFGDFFYKPNQYGELLLLAAGTGLAPMVP ::.: . . .:..:: :..:.. FLJ001 VTMRKSQRSSKGSEILLEKHKFCNIKCYIDGPYGTPTRRIFASEHAVLIGAGIGITPFAS 450 460 470 480 490 500 80 90 100 110 120 130 FLJ003 ILQSITDNENDETFVTLVGCFKTFESIYLKTFLQEQARFWNVRTFFVLSQESSSEQLPWS ::::: FLJ001 ILQSIMYRHQKRKHTCPSCQHSWIEGVQDNMKLHKVDFIWINRDQRSFEWFVSLLTKLEM 510 520 530 540 550 560 >>FLJ00142 ( 674 res) sh04107 (674 aa) initn: 76 init1: 76 opt: 76 Z-score: 94.4 bits: 26.0 E(): 4.6 Smith-Waterman score: 76; 37.143% identity (65.714% similar) in 35 aa overlap (44-78:478-512) 20 30 40 50 60 70 FLJ003 SPCVCFQCYQMGLMSRYVESWRVGDTAFWRGPFGDFFYKPNQYGELLLLAAGTGLAPMVP ::.: . . .:..:: :..:.. FLJ001 VTMRKSQRSSKGSEILLEKHKFCNIKCYIDGPYGTPTRRIFASEHAVLIGAGIGITPFAS 450 460 470 480 490 500 80 90 100 110 120 130 FLJ003 ILQSITDNENDETFVTLVGCFKTFESIYLKTFLQEQARFWNVRTFFVLSQESSSEQLPWS ::::: FLJ001 ILQSIMYRHQKRKHTCPSCQHSWIEGVQDNMKLHKVDFIWINRDQRSFEWFVSLLTKLEM 510 520 530 540 550 560 >>KIAA0287 ( 1523 res) fg06332 (1523 aa) initn: 120 init1: 65 opt: 78 Z-score: 92.7 bits: 26.9 E(): 5.7 Smith-Waterman score: 78; 25.581% identity (56.977% similar) in 86 aa overlap (103-187:293-374) 80 90 100 110 120 130 FLJ003 PILQSITDNENDETFVTLVGCFKTFESIYLKTFLQEQARFWNV-RTFFVLSQESSSEQLP .. .:... :. : : ... :.. KIAA02 SGRARESSDRSQRFPRMSDDNWKDISLNKRESVIQQRVYEGNAFRGGFRFNSTLVSRKRV 270 280 290 300 310 320 140 150 160 170 180 190 FLJ003 WSYQEKTHFGHLGQDLIKELVSCCRRKPFALVCGSAEFTKDIARCLLCAGLTEDSYFLF ... :: :. :.. .: :.::: ::: :. : .. : ..:. :. KIAA02 LERKRRYHFDTDGKGSIHDQKGCPRKKPFE--CGS-EMRKAMSVSSL-SSLSSPSFTESQ 330 340 350 360 370 KIAA02 PIDFGAMPYVCDECGRSFSVISEFVEHQIMHTRENLYEYGESFIHSVAVSEVQKSQVGGK 380 390 400 410 420 430 >>KIAA0163 ( 550 res) ha01059 (550 aa) initn: 47 init1: 47 opt: 72 Z-score: 90.5 bits: 25.0 E(): 7.7 Smith-Waterman score: 72; 23.664% identity (48.855% similar) in 131 aa overlap (70-190:216-341) 40 50 60 70 80 90 FLJ003 AFWRGPFGDFFYKPNQYGELLLLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFES : ::. : .:::..: . . ::. : . KIAA01 VGYQYVITGRNRSLEGRWEVAFKGSSEVFLPPDPIFASAM-SENDNVFCAQLQCFH-FPT 190 200 210 220 230 240 100 110 120 130 140 150 FLJ003 IYLKTFLQEQAR-FWNVRTFFVLSQESSSEQLPWSYQEKTHFGHLGQDLIKELVSC-CRR . . . . .:. .. .:. ... . .: .: :.: .:: :. KIAA01 LRHHDLHSWHAESCYEKSSFLCKRSQTCVDIKDNVVDEGFYFTPKGDD---PCLSCTCHG 250 260 270 280 290 300 160 170 180 190 FLJ003 -KP---FALVC----GSAEFTKDIARCLLCAGLTEDSYFLF .: : .: : .. :: .: : :. :: KIAA01 GEPEMCVAALCERPQGCQQYRKDPKECCKFMCLDPDGNSLFDSMASGMRLVVSCISSFLI 310 320 330 340 350 360 KIAA01 LSLLLFMVHRLRQRRRERIESLIGANLHHFNLGRRIPGFDYGPDGFGTGLTPLHLSDDGE 370 380 390 400 410 420 >>KIAA0015 ( 480 res) ha00478 (480 aa) initn: 67 init1: 67 opt: 71 Z-score: 89.9 bits: 24.7 E(): 8.2 Smith-Waterman score: 71; 34.286% identity (54.286% similar) in 35 aa overlap (24-58:332-366) 10 20 30 40 50 FLJ003 SGLCWQHVPVPLTSPCVCFQCYQMGLMSRYVESWRVGDTAFWRGPFGDFFYKP .: . ... :::. : .:: : :: KIAA00 QVILVQQGQVVKLMEPHRPERQDEKARIEALGGFVSHMDCWRVNGTLAVSRAIGDVFQKP 310 320 330 340 350 360 60 70 80 90 100 110 FLJ003 NQYGELLLLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFESIYLKTFLQEQARFW :: KIAA00 YVSGEADAASRALTGSEDYLLLACDGFFDVVPHQEVVGLVQSHLTRQQGSGLRVAEELVA 370 380 390 400 410 420 >>KIAA1354 ( 632 res) fj01502 (632 aa) initn: 39 init1: 39 opt: 72 Z-score: 89.8 bits: 25.1 E(): 8.4 Smith-Waterman score: 72; 33.803% identity (57.746% similar) in 71 aa overlap (48-113:273-342) 20 30 40 50 60 70 FLJ003 CFQCYQMGLMSRYVESWRVGDTAFWRGPFGDFFYKPNQYGELLLLAAGTGLAP-MVPILQ ::. : .::: :.. . : : :..: KIAA13 PRMDYAAKLMKNIRFPLMTPQDLINYVQTVDFMRTDNTCVNLLLEASNYQMMPYMQPVMQ 250 260 270 280 290 300 80 90 100 110 120 130 FLJ003 SI-TDNENDET-FVTLVGCFKT--FESIYLKTFLQEQARFWNVRTFFVLSQESSSEQLPW : : ..: : .::: : .. : :. . .:.:. : KIAA13 SDRTAIRSDSTHLVTLGGVLRQQLVVSKELRMY-DERAQEWRSLAPMDAPRYQHGIAVIG 310 320 330 340 350 360 140 150 160 170 180 190 FLJ003 SYQEKTHFGHLGQDLIKELVSCCRRKPFALVCGSAEFTKDIARCLLCAGLTEDSYFLF KIAA13 NFLYVVGGQSNYDTKGKTAVDTVFRFDPRYNKWMQVASLNEKRTFFHLSALKGHLYAVGG 370 380 390 400 410 420 >>KIAA1309 ( 639 res) fh10381 (639 aa) initn: 39 init1: 39 opt: 72 Z-score: 89.7 bits: 25.1 E(): 8.5 Smith-Waterman score: 72; 33.803% identity (57.746% similar) in 71 aa overlap (48-113:284-353) 20 30 40 50 60 70 FLJ003 CFQCYQMGLMSRYVESWRVGDTAFWRGPFGDFFYKPNQYGELLLLAAGTGLAP-MVPILQ ::. : .::: :.. . : : :..: KIAA13 PRMDFAAKLMKNIRFPLMTPQELINYVQTVDFMRTDNTCVNLLLEASNYQMMPYMQPVMQ 260 270 280 290 300 310 80 90 100 110 120 130 FLJ003 SI-TDNENDET-FVTLVGCFKT--FESIYLKTFLQEQARFWNVRTFFVLSQESSSEQLPW : : ..: : .::: : .. : :. . .:.:. : KIAA13 SDRTAIRSDTTHLVTLGGVLRQQLVVSKELRMY-DEKAHEWKSLAPMDAPRYQHGIAVIG 320 330 340 350 360 370 140 150 160 170 180 190 FLJ003 SYQEKTHFGHLGQDLIKELVSCCRRKPFALVCGSAEFTKDIARCLLCAGLTEDSYFLF KIAA13 NFLYVVGGQSNYDTKGKTAVDTVFRFDPRYNKWMQVASLNEKRTFFHLSALKGYLYAVGG 380 390 400 410 420 430 190 residues in 1 query sequences 2210804 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:02:27 2009 done: Fri Feb 27 11:02:27 2009 Total Scan time: 0.360 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]