hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/shimazu/full/sh/sh07625/interpro/cnk_1/seq.in
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Query:  sh07625  588

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
Amino_oxidase Flavin containing amine oxidoreductase    334.5    1.2e-96   1
FAD_binding_3 FAD binding domain                        -30.9       0.28   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
FAD_binding_3   1/1      83   202 ..     1   141 []   -30.9     0.28
Amino_oxidase   1/1      90   526 ..     1   481 []   334.5  1.2e-96

Alignments of top-scoring domains:
FAD_binding_3: domain 1 of 1, from 83 to 202: score -30.9, E = 0.28
                   *->VLIVGgGPaGLmlAllLaraGvrvvvvErhaDetsptpRAgglnqRT
                      V++VG+G aGL++A +L+ aG +v+++E  +     ++ + ++  R 
     sh07625    83    VIVVGAGVAGLVAAKVLSDAGHKVTILEADN-----RIGGRIFTYRD 124  

                   MElLrqaGLedrilaegaphegmglafegtslvaidefgltpgtgtaltv
                       ++ G   ++ a+  p +   l+  ++ l      gl     t +t 
     sh07625   125 ----QNTGWIGELGAMRMPSSHRILHKLCQGL------GLN---LTKFTQ 161  

                   pqleadtelasparelGldaipqrglepvlva.haddrgeteirf<-*
                   ++ ++ te+ +  ++    + +  + e ++ a +++++g  +++    
     sh07625   162 YDKNTWTEVHEVKLRN---YVVEKVPEKLGYAlRPQEKGH-SPED    202  

Amino_oxidase: domain 1 of 1, from 90 to 526: score 334.5, E = 1.2e-96
                   *->laGLaAAreLlraGfqdVtvlEArdRvGGRvrtvrlkggdadgflie
                      +aGL+AA+ L++aG+ +Vt+lEA++R+GGR++t+r++++   g++ e
     sh07625    90    VAGLVAAKVLSDAGH-KVTILEADNRIGGRIFTYRDQNT---GWIGE 132  

                   lGaqwflgaypnllnlllelglelglelfpftgdffldl.rrggrrpdvp
                   lGa+++    p+ +++l +l + lgl+l  ft+++ + ++ +++++ ++ 
     sh07625   133 LGAMRM----PSSHRILHKLCQGLGLNLTKFTQYDKNTWtEVHEVKLRNY 178  

                   t.lplp...lelel.leeeirl.l.ll.allllapelleldlesfsdlls
                     + +p++  +  ++ e++++ +  ++ al+++ ++l++l++++ + +++
     sh07625   179 VvEKVPeklGYALRpQEKGHSPeDiYQmALNQALKDLKALGCRKAMKKFE 228  

                   aagflelaldelfrsllagalgflelelsarlallslrlldledggatfp
                   ++++le++l+   ++l++ a+ +l++ +s + + +  ++++l+ + +  +
     sh07625   229 RHTLLEYLLG--EGNLSRPAVQLLGDVMSEDGFFYLSFAEALRAHSCLSD 276  

                   ggglklplGgldqllaaaagllggrvrlntrVrsisqegdgvtvttedGe
                   ++++ +++Gg+d+l++a++  l g+v+ln++V+ ++q++ +v v++e+ +
     sh07625   277 RLQYSRIVGGWDLLPRALLSSLSGLVLLNAPVVAMTQGPHDVHVQIETSP 326  

                   tgtkgdesetieaDaVivtvPlgvlkrhlilflPpLpaakqeairrlgfg
                   +  +    ++++aD V +t++ +++kr  i+f+PpLp+  qea+rrl+++
     sh07625   327 PARNL---KVLKADVVLLTASGPAVKR--ITFSPPLPRHMQEALRRLHYV 371  

                   svsKvflefetpfwpengdhlfgaykgdlfgllvtdgedlsrggyvldts
                   +++Kvfl f++pfw+e++         +++g++ td     ++  ++++ 
     sh07625   372 PATKVFLSFRRPFWREEH---------IEGGHSNTDR----PSRMIFYPP 408  

                   ktsgsapsggrgvllsyvlgdgagnreledlsdeelleavledLrkllgp
                   + +g        +l+sy+++d+a    ++ ls ee l+++l+d+++l+gp
     sh07625   409 PREG------ALLLASYTWSDAA--AAFAGLSREEALRLALDDVAALHGP 450  

                   dfedvpdPvtagdyrdfvvsrWstdpyargsysyppvgqdsrdrpalrep
                   +++  +d +       +vv+rW++d +++g++   p+  +++  +++  p
     sh07625   451 VVRQLWDGT-------GVVKRWAEDQHSQGGFVVQPPALWQTEKDDWTVP 493  

                   vgndnnkdgdpglyfAGehtsggypgtveGAveSGlraArril<-*
                    g         ++yfAGeht+  + g+ve Av S+lraA  i+   
     sh07625   494 YG---------RIYFAGEHTAYPH-GWVETAVKSALRAAIKIN    526  

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