# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh07374.fasta.huge -Q ../query/FLJ00318.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00318, 127 aa vs ./tmplib.10216 library 2210867 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 6.1453+/-0.00609; mu= 7.7810+/- 0.411 mean_var=242.7239+/-54.494, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.082322 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00221 ( 298 res) sj06160 ( 298) 125 25.8 1.6 KIAA0458 ( 1552 res) ef01252 (1552) 131 27.7 2.2 FLJ00070 ( 1382 res) as00070 (1382) 127 27.1 2.9 KIAA1587 ( 991 res) fj08327 ( 991) 123 26.4 3.4 KIAA2020 ( 572 res) ph01249 ( 572) 117 25.3 4.3 FLJ00369 ( 700 res) sh06511 ( 700) 117 25.5 4.7 KIAA1431 ( 891 res) fj00022 ( 891) 113 25.2 7.4 FLJ00222 ( 656 res) sj06165 ( 656) 111 24.7 7.5 KIAA0450 ( 1182 res) hj05822 (1182) 114 25.5 7.9 FLJ00417 ( 600 res) sj06336 ( 600) 108 24.3 9.2 KIAA0765 ( 952 res) hk04803s1 ( 952) 110 24.9 9.8 FLJ00414 ( 1129 res) sg00016 (1129) 111 25.1 9.9 KIAA1855 ( 1270 res) fg04654 (1270) 111 25.2 10 KIAA0208 ( 748 res) ha02713 ( 748) 107 24.3 11 KIAA0223 ( 1165 res) ha02995 (1165) 109 24.9 12 FLJ00280 ( 440 res) sh01728 ( 440) 102 23.4 13 KIAA1261 ( 787 res) hh15855b ( 787) 104 24.0 15 KIAA0907 ( 569 res) hk10396 ( 569) 102 23.5 15 KIAA1676 ( 735 res) fh07095 ( 735) 103 23.8 15 KIAA0574 ( 405 res) hj00204 ( 405) 99 22.9 16 KIAA0293 ( 1505 res) hg03205 (1505) 107 24.8 16 KIAA0079 ( 1102 res) ha03543 (1102) 105 24.4 16 KIAA1076 ( 804 res) hj06779 ( 804) 102 23.8 17 FLJ00104 ( 287 res) as00104 ( 287) 95 22.2 18 FLJ00253 ( 349 res) sj09455 ( 349) 96 22.5 19 KIAA0174 ( 369 res) ha02422 ( 369) 96 22.5 19 KIAA1930 ( 664 res) fj11193 ( 664) 98 23.2 22 FLJ00317 ( 111 res) sh07047 ( 111) 87 20.6 22 FLJ00004 ( 698 res) as00004 ( 698) 98 23.2 23 KIAA1865 ( 723 res) fj14303 ( 723) 98 23.2 23 KIAA1744 ( 855 res) pj01516 ( 855) 99 23.5 23 KIAA1886 ( 655 res) fk01837 ( 655) 97 23.0 24 KIAA0137 ( 801 res) ha02915s1 ( 801) 98 23.3 24 KIAA1639 ( 2584 res) af14886 (2584) 105 25.0 25 KIAA0309 ( 3053 res) hg00096s1 (3053) 105 25.1 27 KIAA0929 ( 1663 res) hh03374 (1663) 101 24.2 27 FLJ00315 ( 925 res) sh06842 ( 925) 96 23.2 30 FLJ00322 ( 659 res) sh08187 ( 659) 93 22.6 33 KIAA1139 ( 1124 res) hk00330 (1124) 96 23.3 34 KIAA1545 ( 968 res) fj14026s1 ( 968) 95 23.1 34 FLJ00091 ( 170 res) as00091 ( 170) 84 20.5 35 KIAA0058 ( 181 res) ha01532 ( 181) 84 20.6 36 KIAA0363 ( 1522 res) hh00103 (1522) 97 23.6 36 KIAA1249 ( 949 res) hh04184 ( 949) 94 22.9 36 FLJ00201 ( 705 res) sj04110 ( 705) 90 22.3 43 KIAA0793 ( 1055 res) hk05692 (1055) 92 22.8 45 KIAA0495 ( 209 res) hg00106 ( 209) 82 20.4 45 KIAA0182 ( 1157 res) ha02329s1 (1157) 91 22.7 51 KIAA1535 ( 711 res) fk12792 ( 711) 88 22.0 51 KIAA1602 ( 1003 res) fj10252 (1003) 90 22.5 52 >>FLJ00221 ( 298 res) sj06160 (298 aa) initn: 55 init1: 55 opt: 125 Z-score: 102.8 bits: 25.8 E(): 1.6 Smith-Waterman score: 125; 32.979% identity (46.809% similar) in 94 aa overlap (19-105:204-295) 10 20 30 40 FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTL :.:. : : : : : : : : FLJ002 LPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQSPPPPEPADQGPPPAPHPP-PLL 180 190 200 210 220 230 50 60 70 80 90 100 FLJ003 SSPIN---GMGPPFSV----ISSPMGPHSMSVPTTPTLGFSTGSPQVSAGLGQGEGVGPG .: : :. ::: . :::: :: :. : ... :..::: : .. : FLJ002 PQPPNFPQGLLPPFPPGMFPLWPPMGPFP-PVPPPPSSGEAVAPPSTSAGEPLGTVTARG 240 250 260 270 280 290 110 120 FLJ003 VGLWLQLQDDRLILRPLGGRCCGLPA : FLJ002 RQGWNTH >>KIAA0458 ( 1552 res) ef01252 (1552 aa) initn: 125 init1: 65 opt: 131 Z-score: 100.1 bits: 27.7 E(): 2.2 Smith-Waterman score: 131; 35.294% identity (57.647% similar) in 85 aa overlap (25-106:806-886) 10 20 30 40 50 FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING :: :: : : :: :: .: : . :..: KIAA04 APTAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAP-SHAQPPLHG 780 790 800 810 820 830 60 70 80 90 100 110 FLJ003 MGPP--FSVISSPMGPHSMSVPTTPTLGFSTGSPQVSAGLGQGEGVG-PGVGLWLQLQDD .::: :. ..:. : : : .:. . : .: :: . ... : ..: : KIAA04 QGPPGPHSLQAGPLLQHPG--PPQP-FGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQS 840 850 860 870 880 890 120 FLJ003 RLILRPLGGRCCGLPA KIAA04 ALQSQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPP 900 910 920 930 940 950 >>FLJ00070 ( 1382 res) as00070 (1382 aa) initn: 134 init1: 78 opt: 127 Z-score: 98.0 bits: 27.1 E(): 2.9 Smith-Waterman score: 127; 32.710% identity (47.664% similar) in 107 aa overlap (23-127:19-125) 10 20 30 40 50 60 FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFS :. : : : :: .: :: . :. . : : FLJ000 VRGLVWASSWGWEVSALPAVQSASPRLPPGPRGPLPPASPAALPRCPLPSPGAPGP 10 20 30 40 50 70 80 90 100 110 FLJ003 VISSPMGPHSM-SVPTTP-TLGFSTGSPQVSAGLGQGEGVGPGVGLWLQLQDDRLILRPL .. : :: ..: : .: .:. .:: : : :.. : : :.: : FLJ000 LLPSGAGPSPRPGAPPLPRVLRPRMPGPRGAAGGLAPEMRGAGAAGLLALLLLLLLLLGL 60 70 80 90 100 110 120 FLJ003 GGRCCGLPA ::: : :: FLJ000 GGRVEGGPAGERGAGGGGALARERFKVVFAPVICKRTCLKGQCRDSCQQGSNMTLIGENG 120 130 140 150 160 170 >>KIAA1587 ( 991 res) fj08327 (991 aa) initn: 323 init1: 94 opt: 123 Z-score: 96.7 bits: 26.4 E(): 3.4 Smith-Waterman score: 123; 34.409% identity (52.688% similar) in 93 aa overlap (11-100:339-428) 10 20 30 FLJ003 REGDFSTQVNSSLTSPT-GRGSMAAPSLHPSLGPGIGS-- :. ..:: :.:: . :. :. : :... KIAA15 AASDGQSISLVPTRGKGSSTSVPPTATEGLSTSVQPTAGEGS--STSVPPTPGGGLSTSV 310 320 330 340 350 360 40 50 60 70 80 90 FLJ003 PGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQVSAGLGQGEG : .:: : : :: ::. : : ::: : . : .:. : . : : . KIAA15 PPTATEELSTSVPPTPGEGPSTSVLPIPGEGLSTSVPPTASDGSDTSVPP-TPGEGASTL 370 380 390 400 410 420 100 110 120 FLJ003 VGPGVGLWLQLQDDRLILRPLGGRCCGLPA : : KIAA15 VQPTAPDGPGSSVLPNPGEGPSTLFSSSASVDRNPSKCSLVLPSPRVTKASVDSDSEGPK 430 440 450 460 470 480 >>KIAA2020 ( 572 res) ph01249 (572 aa) initn: 89 init1: 57 opt: 117 Z-score: 95.1 bits: 25.3 E(): 4.3 Smith-Waterman score: 117; 32.292% identity (59.375% similar) in 96 aa overlap (3-91:52-142) 10 20 30 FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLG :. .: : :. .: : ::. . .:.:: KIAA20 YFQIFLFQLDSGASGEPGHSLGLTLGFSHCGNCQTAVVSA--QPEG---MASNGAYPALG 30 40 50 60 70 40 50 60 70 80 FLJ003 PGI-GSPGQLHSPISTL--SSPING--MGPPFSVISSPMG-PHSMS-VPTTPTLGFSTGS ::. ..:: : ...: ..: : :: . . ..: : : .: .:.:: . . : KIAA20 PGVTANPGTSLSVFTALPFTTPAPGPTHGPLLVTAGAPPGGPLVLSTLPSTPLVTEQDGC 80 90 100 110 120 130 90 100 110 120 FLJ003 PQVSAGLGQGEGVGPGVGLWLQLQDDRLILRPLGGRCCGLPA .:: KIAA20 GPSGAGASNVFVQMRTEVGPVKAAQAQTLVLTQAPLVWQAPGALCGGVVCPPPLLLAAAP 140 150 160 170 180 190 >>FLJ00369 ( 700 res) sh06511 (700 aa) initn: 78 init1: 47 opt: 117 Z-score: 94.3 bits: 25.5 E(): 4.7 Smith-Waterman score: 117; 32.710% identity (58.879% similar) in 107 aa overlap (5-105:347-448) 10 20 30 FLJ003 REGDFSTQVNSSLTSPTGR-GSMAAPSLHPSLG- ....:.. . : : :... :: ..: FLJ003 EPAKTKKGLSSILDAARWNRGEPQVPDFRHLKAEVDAEKPGATDRKGGVGMPSRDRNIGA 320 330 340 350 360 370 40 50 60 70 80 FLJ003 PGIGSPG-QLHSPISTLSSPIN--GMGPPFSVI-SSPMGPHSMSVPTTPTLGFSTGSPQV :: .:: .:: :.: :.:: : :. . :::.:: :. .: . . :. .. FLJ003 PGQDTPGVSLH-PLS-LDSPDREPGADAPLELGDSSPQGPMSLE-SLAPPESTDEGA-ET 380 390 400 410 420 430 90 100 110 120 FLJ003 SAGLGQGEGVGPGVGLWLQLQDDRLILRPLGGRCCGLPA : : :.: ::. : FLJ003 ERCPGWGAGAG-GVAYWALVGGCRVTAAICACLSQALAPHAPLLLSGSGHSSPFFFPFLI 440 450 460 470 480 490 >>KIAA1431 ( 891 res) fj00022 (891 aa) initn: 124 init1: 81 opt: 113 Z-score: 90.7 bits: 25.2 E(): 7.4 Smith-Waterman score: 113; 28.571% identity (49.524% similar) in 105 aa overlap (3-102:22-116) 10 20 30 FLJ003 REGDFSTQVNSSLTSPT---GRGSMAAPSLHPSLG--PGIG ::. ...:. :: ::: :: .: : : .: KIAA14 GGCGQGCGSVRDRSEGRRAASGDMRGAASASVREPTPLPGRG---APRTKPRAGRGPTVG 10 20 30 40 50 40 50 60 70 80 90 FLJ003 SPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQVSAGLGQGE .:. : : ::.. . ..: :: ..:. .:. :: . : KIAA14 TPATLALPARGRPRSRNGLASKGQRGAAPTGPGHRALPSR-----DTALPQERNK--KLE 60 70 80 90 100 110 100 110 120 FLJ003 GVGPGVGLWLQLQDDRLILRPLGGRCCGLPA .:: :. KIAA14 AVGTGIEPKAMSQGLVTFGDVAVDFSQEEWEWLNPIQRNLYRKVMLENYRNLASLGLCVS 120 130 140 150 160 170 >>FLJ00222 ( 656 res) sj06165 (656 aa) initn: 89 init1: 52 opt: 111 Z-score: 90.7 bits: 24.7 E(): 7.5 Smith-Waterman score: 111; 31.304% identity (51.304% similar) in 115 aa overlap (16-125:410-515) 10 20 30 40 FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSP-GQLHSP : : : :: . ::: ::: :. . FLJ002 KSQKPGRRGFPELVLGTRDTGSKGVADDVVPPGPGP--APEAPAQEGPGSGSPRGKAPAA 380 390 400 410 420 430 50 60 70 80 90 100 FLJ003 ISTLSSPINGMGPPFSVISSPMGPHSMSVPTTP-TLGFSTGSPQVSAGLGQGE---GVGP .. .::. :. :...: :: .:.. ..: .: :..: : : . :: FLJ002 VAE-KSPVRVR--PLRVLDGP-GPAGMAATCMKCVVGSCAG---VNTGGLQRERPPSPGP 440 450 460 470 480 490 110 120 FLJ003 GVGLWLQLQDDRLILRPLGGRCCGLPA . :. : ::. :::: FLJ002 ASRQAAIRQQPRARADSLGAPCCGLDPHAIPGRSREAPKGPGAWRQGPGGSGSMSSDSSS 500 510 520 530 540 550 >>KIAA0450 ( 1182 res) hj05822 (1182 aa) initn: 89 init1: 52 opt: 114 Z-score: 90.3 bits: 25.5 E(): 7.9 Smith-Waterman score: 114; 32.174% identity (52.174% similar) in 115 aa overlap (16-125:991-1096) 10 20 30 40 FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSP-GQLHSP : : : :: . ::: ::: :. . KIAA04 KSQKPGRRGFPELVLGTRDTGSKGVADDVVPPGPGP--APEAPAQEGPGSGSPRGKAPAA 970 980 990 1000 1010 50 60 70 80 90 100 FLJ003 ISTLSSPINGMGPPFSVISSPMGPHSMSVPTTP-TLGFSTGSPQVSAGLGQGE---GVGP .. .::. . :: :...: :: .:.. ..: .: :..: : : . :: KIAA04 VAE-KSPVR-VRPP-RVLDGP-GPAGMAATCMKCVVGSCAG---VNTGGLQRERPPSPGP 1020 1030 1040 1050 1060 1070 110 120 FLJ003 GVGLWLQLQDDRLILRPLGGRCCGLPA . :. : ::. :::: KIAA04 ASRQAAIRQQPRARADSLGAPCCGLDPHAIPGRSREAPKGPGAWRQGPGGSGSMSSDSSS 1080 1090 1100 1110 1120 1130 >>FLJ00417 ( 600 res) sj06336 (600 aa) initn: 89 init1: 52 opt: 108 Z-score: 89.1 bits: 24.3 E(): 9.2 Smith-Waterman score: 108; 29.825% identity (51.754% similar) in 114 aa overlap (16-125:354-459) 10 20 30 40 FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSP-GQLHSP : : : :: . ::: ::: :. . FLJ004 KSQKPGRRGFPELVLGTRDTGSKGVADDVVPPGPGP--APEAPAQEGPGSGSPRGKAPAA 330 340 350 360 370 380 50 60 70 80 90 100 FLJ003 ISTLSSPINGMGPPFSVISSPMGPHSMSVPTTP-TLGFSTGSPQVSAGLGQGEGVGPGVG .. .::. :. :...: :: .:.. ..: .: ..:: . . .:: . FLJ004 VAE-KSPVRVR--PLRVLDGP-GPAGMAATCMKCVVGSCAGVN--TGGLHRERPPSPGPA 390 400 410 420 430 110 120 FLJ003 LWLQL--QDDRLILRPLGGRCCGLPA :. : ::. :::: FLJ004 SRQAAIRQQPRARADSLGAPCCGLDPHGIPGRSREAPKGPGAWRQGPGGSGSMSSDSSSP 440 450 460 470 480 490 127 residues in 1 query sequences 2210867 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:51:42 2009 done: Fri Feb 27 10:51:42 2009 Total Scan time: 0.310 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]