hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/shimazu/full/sh/sh07301/interpro/cnk_1/seq.in
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Query:  sh07301  454

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TPR      Tetratricopeptide repeats                       58.2    1.1e-12   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TPR        1/3     322   355 ..     1    34 []    17.7      1.7
TPR        2/3     356   389 ..     1    34 []    25.9   0.0055
TPR        3/3     397   430 ..     1    34 []    16.3      4.2

Alignments of top-scoring domains:
TPR: domain 1 of 3, from 322 to 355: score 17.7, E = 1.7
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a  +  +G+ y+k g++ +A++ y+kALe+d +n   
     sh07301   322    ALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQN    355  

TPR: domain 2 of 3, from 356 to 389: score 25.9, E = 0.0055
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      +eal  +G +y  +g +++Aie++e ALe  P++   
     sh07301   356    VEALVARGALYATKGSLNKAIEDFELALENCPTH    389  

TPR: domain 3 of 3, from 397 to 430: score 16.3, E = 4.2
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                       ++l  +G  ++  +++  A+ yy+kAL+ld+++   
     sh07301   397    CQTLVERGGQLEEEEKFLNAESYYKKALALDETF    430  

//