# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh07210.fasta.huge -Q ../query/FLJ00165.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00165, 146 aa vs ./tmplib.10216 library 2210848 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.7754+/-0.00425; mu= 12.9184+/- 0.287 mean_var=100.3560+/-21.888, 0's: 0 Z-trim: 1 B-trim: 25 in 1/39 Lambda= 0.128027 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1275 ( 1140 res) hk10413 (1140) 110 29.9 0.41 KIAA1297 ( 2242 res) fg03883 (2242) 104 29.2 1.3 FLJ00270 ( 352 res) sj07613 ( 352) 95 26.5 1.4 KIAA0726 ( 973 res) hk02972 ( 973) 98 27.6 1.7 KIAA0557 ( 493 res) hh01334 ( 493) 93 26.3 2.2 FLJ00333 ( 437 res) sj04245 ( 437) 92 26.0 2.3 KIAA1632 ( 1457 res) fh19068(revised) (1457) 94 27.1 3.7 KIAA1755 ( 1110 res) fg04230(revised) (1110) 91 26.4 4.6 KIAA0775 ( 639 res) hk05255 ( 639) 85 25.0 7 KIAA0232 ( 1402 res) pf00983 (1402) 88 26.0 7.7 KIAA1139 ( 1124 res) hk00330 (1124) 84 25.1 11 KIAA0222 ( 1204 res) ha02586 (1204) 84 25.1 12 KIAA1522 ( 1044 res) fh14706(revised) (1044) 82 24.7 14 KIAA1419 ( 2464 res) ff01653 (2464) 86 25.9 14 FLJ00230 ( 414 res) sj06557 ( 414) 77 23.2 15 KIAA1014 ( 1050 res) hk02388s2 (1050) 81 24.5 16 FLJ00011 ( 394 res) as00011 ( 394) 76 23.0 17 KIAA0946 ( 667 res) hj04787 ( 667) 78 23.7 18 KIAA1940 ( 821 res) ah04227 ( 821) 78 23.8 20 FLJ00216 ( 270 res) sj05401 ( 270) 72 22.1 22 KIAA0040 ( 164 res) ha01160 ( 164) 69 21.2 24 KIAA0323 ( 724 res) hg00467 ( 724) 76 23.4 24 KIAA0672 ( 824 res) hk02382 ( 824) 76 23.4 26 KIAA1614 ( 1208 res) fj12973 (1208) 77 23.8 29 FLJ00196 ( 284 res) sj02959 ( 284) 70 21.7 29 KIAA0865 ( 1900 res) hk06640y1 (1900) 79 24.5 29 KIAA1836 ( 718 res) fh12206(revised) ( 718) 74 23.0 31 FLJ00372 ( 396 res) sh06918 ( 396) 71 22.1 31 KIAA1276 ( 1068 res) fh00139s1 (1068) 75 23.4 34 FLJ00141 ( 1326 res) sh04092 (1326) 76 23.7 35 KIAA0097 ( 2038 res) ha00943(revised) (2038) 78 24.3 35 KIAA0638 ( 1384 res) hj03347s1 (1384) 76 23.7 35 KIAA1567 ( 924 res) fh22119 ( 924) 74 23.1 36 KIAA2021 ( 648 res) ah05004 ( 648) 72 22.6 37 KIAA1876 ( 803 res) pf01162s1 ( 803) 73 22.9 37 KIAA0610 ( 686 res) hh01733b ( 686) 72 22.6 38 KIAA0164 ( 929 res) ha02373 ( 929) 73 23.0 41 KIAA1165 ( 284 res) hk01631 ( 284) 67 21.2 43 KIAA1704 ( 351 res) fj16938 ( 351) 68 21.5 43 KIAA0895 ( 540 res) hk08826 ( 540) 70 22.1 43 KIAA0852 ( 1017 res) hk06101 (1017) 73 23.0 43 FLJ00085 ( 292 res) as00085 ( 292) 67 21.2 43 KIAA0860 ( 551 res) hk06518 ( 551) 70 22.1 43 KIAA0825 ( 553 res) hh03427 ( 553) 70 22.1 44 KIAA0292 ( 1716 res) ha06353 (1716) 75 23.7 46 FLJ00283 ( 500 res) sh02088 ( 500) 69 21.9 46 KIAA1684 ( 762 res) fh24594 ( 762) 71 22.5 47 FLJ00037 ( 145 res) as00037 ( 145) 63 20.1 47 KIAA0608 ( 775 res) hh00889b ( 775) 71 22.5 47 KIAA1941 ( 1233 res) ah04470 (1233) 73 23.1 48 >>KIAA1275 ( 1140 res) hk10413 (1140 aa) initn: 92 init1: 44 opt: 110 Z-score: 113.4 bits: 29.9 E(): 0.41 Smith-Waterman score: 110; 29.851% identity (55.224% similar) in 67 aa overlap (62-128:799-861) 40 50 60 70 80 90 FLJ001 EPPQSPQKLLLFGFTGLLSVLSVVGTALLLWNKKRMRGPGKDPTRKCPDPRSASSPKQHP : .:: ::. . ::. ::: :: KIAA12 GLKKPVERSSVLDRYPPAANELTMRKSWIPWMRKRENGPSITQEK---GPRTNSSPG-HP 770 780 790 800 810 820 100 110 120 130 140 FLJ001 SESVYTALQRRETEVYACIENEDGSSPTAKQSPLSQERPHRFEDDGELNLVYENL .: : . : . .. . ..:.... :: :.: KIAA12 GEVVLSPKQGQPLHIRVTPDHENSTATLEITSPTSEEFFSSTTVIPTLGNQKPRITIIPS 830 840 850 860 870 880 KIAA12 PNVMPQKQKSGDTTLGPERAMSPVTITTFSREKTPESGRGAFADRPTSPIQIMTVSTSAA 890 900 910 920 930 940 >>KIAA1297 ( 2242 res) fg03883 (2242 aa) initn: 94 init1: 45 opt: 104 Z-score: 104.1 bits: 29.2 E(): 1.3 Smith-Waterman score: 104; 31.169% identity (61.039% similar) in 77 aa overlap (64-135:1955-2029) 40 50 60 70 80 90 FLJ001 PQSPQKLLLFGFTGLLSVLSVVGTALLLWNKKRMRGPGKDPTRKCPDPRSASSPKQHPSE :. . .::..: :. : :.. .. .: : . KIAA12 FVSAPPAPEPPAPEPPPEPTKVTVQSLSPAKEVVSSPGSSP-RSSPRPEG-TTLRQGPPQ 1930 1940 1950 1960 1970 1980 100 110 120 130 140 FLJ001 SVYTALQR----RETEVYACIENEDGSSPTAKQSPLSQE-RPHRFEDDGELNLVYENL . :: :.. : : :: :: : . .:: : . : .:. ... KIAA12 KPYTFLEEKARGRFGVVRACRENATGRTFVAKIVPYAAEGKPRVLQEYEVLRTLHHERIM 1990 2000 2010 2020 2030 2040 KIAA12 SLHEAYITPRYLVLIAESCGNRELLCGLSDRFRYSEDDVATYMVQLLQGLDYLHGHHVLH 2050 2060 2070 2080 2090 2100 >>FLJ00270 ( 352 res) sj07613 (352 aa) initn: 59 init1: 59 opt: 95 Z-score: 104.0 bits: 26.5 E(): 1.4 Smith-Waterman score: 95; 34.694% identity (67.347% similar) in 49 aa overlap (35-80:231-279) 10 20 30 40 50 60 FLJ001 YYCSVHWPHSTVRGSGTFILVRDAGYREPPQSP--QKLLLFGFTGLLSVLSVVGTALLLW .:: ...:..:. :: :....: : :: FLJ002 KSSVYGPCTIPVFDSWENGTGFQNMSICWVRSPVVHSVLVMGYGGLTSLFNLVVLAWALW 210 220 230 240 250 260 70 80 90 100 110 120 FLJ001 NKKRMRGPGKDPT-RKCPDPRSASSPKQHPSESVYTALQRRETEVYACIENEDGSSPTAK . .:.: . :. : : : FLJ002 TLRRLRERADAPSVRACHDTVTVLGLTVLLGTTWALAFFSFGVFLLPQLFLFTILNSLYG 270 280 290 300 310 320 >>KIAA0726 ( 973 res) hk02972 (973 aa) initn: 113 init1: 54 opt: 98 Z-score: 102.1 bits: 27.6 E(): 1.7 Smith-Waterman score: 98; 28.696% identity (51.304% similar) in 115 aa overlap (36-133:863-973) 10 20 30 40 50 60 FLJ001 YCSVHWPHSTVRGSGTFILVRDAGYREPPQSPQKLLLFGFTGLLSVLSVVGTALLLWNKK : :.. .:.: .. :.: . . .. KIAA07 SQQFLHRGHQPPPEMAGHSLASSHRNSMIPSAATLIIVVCVGFLVLMVVLGLVRIHSLHR 840 850 860 870 880 890 70 80 90 100 110 FLJ001 RMRG----PGKDPTRKCPD---PRSASSPKQHPSESVYTALQRRETEVYACI----ENED :. : :: . : :: :: . .: :: : :.. : . . :.:: KIAA07 RVSGAGGPPGASSDPKDPDLFWDDSALTIIVNPMESY----QNRQSCVTGAVGGQQEDED 900 910 920 930 940 120 130 140 FLJ001 GSSPTAKQSPLSQER------PHRFEDDGELNLVYENL .:. . .:: :.:: :::. KIAA07 SSDSEVADSPSSDERRIIETPPHRY 950 960 970 >>KIAA0557 ( 493 res) hh01334 (493 aa) initn: 85 init1: 50 opt: 93 Z-score: 100.4 bits: 26.3 E(): 2.2 Smith-Waterman score: 93; 26.582% identity (55.696% similar) in 79 aa overlap (63-138:199-277) 40 50 60 70 80 90 FLJ001 PPQSPQKLLLFGFTGLLSVLSVVGTALLLWNKKRMRGPGKDPTRKCPDPRSASSPKQHPS ... .::: : : : :: . : KIAA05 FLKHQAEAQPEDLSLEEEARFSSQQPPAQLSHRPQRGPLLWPERGPPAPRHQEMASASPF 170 180 190 200 210 220 100 110 120 130 140 FLJ001 ESVYTAL--QRRETEVYACIENEDGSSPTAKQSPLSQERPH-RFEDDGELNLVYENL :... . . ... :: :. .:. ...:: .: : ..:: :. KIAA05 LSAWSQVPVNLEDVAVYLSGEEPRCMDPAQRDAPLENEGPGIQLEDGGDGREDAPLRMEW 230 240 250 260 270 280 KIAA05 YRVLSARCQGPGHPLPGQRPAPVRGLVRPDQPRGGPPPGRRASHGADKPYTCPECGKGFS 290 300 310 320 330 340 >>FLJ00333 ( 437 res) sj04245 (437 aa) initn: 73 init1: 46 opt: 92 Z-score: 100.0 bits: 26.0 E(): 2.3 Smith-Waterman score: 100; 36.486% identity (63.514% similar) in 74 aa overlap (47-110:315-387) 20 30 40 50 60 70 FLJ001 RGSGTFILVRDAGYREPPQSPQKLLLFGFTGLLSVLSVVGTALLL--W-NKKRMRGPGKD ::::. .... :::: : ..: : :..: FLJ003 LGAQRSETVTLYITGLTANRSGPFATGVAGGLLSIAGLAAGALLLYCWLSRKAGRKPASD 290 300 310 320 330 340 80 90 100 110 120 FLJ001 PTRKCPDPRSASSPKQH--PS----ESVYT-ALQRRETEVYACIENEDGSSPTAKQSPLS :.:. :. ... : : :. . ::: : : :. ::. . FLJ003 PARS-PSDSDSQEPTYHNVPAWEELQPVYTNANPRGENVVYSEVRIIQEKKKHAVASDPR 350 360 370 380 390 400 130 140 FLJ001 QERPHRFEDDGELNLVYENL FLJ003 HLRNKGSPIIYSEVKVASTPVSGSLFLASSAPHR 410 420 430 >>KIAA1632 ( 1457 res) fh19068(revised) (1457 aa) initn: 55 init1: 55 opt: 94 Z-score: 96.2 bits: 27.1 E(): 3.7 Smith-Waterman score: 94; 29.762% identity (53.571% similar) in 84 aa overlap (49-130:96-176) 20 30 40 50 60 70 FLJ001 SGTFILVRDAGYREPPQSPQKLLLFGFTGLLSVLSVVGTALLLWNKKRMRGPGKDPTRKC :. :.. . : : . . :. .: : KIAA16 FKGDHLKVVTDSQLQDDASGQNESEMFDVPLTSLTISNEESLTCNTEPPKEGGE--ARPC 70 80 90 100 110 120 80 90 100 110 120 130 FLJ001 PDPRSASSPKQHPSESVYTALQ--RRETEVYACIENEDGSSPTAKQSPLSQERPHRFEDD :: .:: ::...: : .. . ::: . . : : .: :: .: .: KIAA16 VGD-SAVTPKVHPGDNVGTKVETPKNFTEVEENMSVQGGLSESAPQSNFSYTQPAMENIQ 130 140 150 160 170 180 140 FLJ001 GELNLVYENL KIAA16 VRETQNSKEDEQGLVCSSEVPQNVGLQSSCPAKHGFQTPRVKKLYPQLPAEIAGEAPALV 190 200 210 220 230 240 >>KIAA1755 ( 1110 res) fg04230(revised) (1110 aa) initn: 83 init1: 55 opt: 91 Z-score: 94.5 bits: 26.4 E(): 4.6 Smith-Waterman score: 91; 29.032% identity (53.226% similar) in 62 aa overlap (66-124:309-367) 40 50 60 70 80 90 FLJ001 SPQKLLLFGFTGLLSVLSVVGTALLLWNKKRMRGPGKDPTRKC---PDPRSASSPKQHPS .:.:: .: : ::.::::. :. KIAA17 PQGSYMNVLEDALDCASGLRAGVSQEPAASKMQGPLGNPENMVQLRPGPRQASSPRLSPA 280 290 300 310 320 330 100 110 120 130 140 FLJ001 ESVYTALQRRETEVYACIENEDGSSPTAKQSPLSQERPHRFEDDGELNLVYENL . .: ::.. . ....: : : KIAA17 SPAAAA---SETKIEVKTKERNGRLPKPMPCPSRNTSSPEPPTPGLKFSFLRGQRQPSVT 340 350 360 370 380 390 KIAA17 PEKASLQHNGPWKVLCSLYSPKPNRAKSLGKAGTTQTKTSGPATAPSPLTEEKAALPEAS 400 410 420 430 440 450 >>KIAA0775 ( 639 res) hk05255 (639 aa) initn: 87 init1: 55 opt: 85 Z-score: 91.2 bits: 25.0 E(): 7 Smith-Waterman score: 85; 28.169% identity (46.479% similar) in 71 aa overlap (72-141:395-463) 50 60 70 80 90 100 FLJ001 LFGFTGLLSVLSVVGTALLLWNKKRMRGPGKDPTRKCPDPRSASSPKQHPSESVYTALQR ..:. ::.:.. :: . : :: KIAA07 HSPAPQCPSPSPPARAAPPCPPCQSPVPQRRSPVPPCPSPQQRRSPASPSCPSPVP--QR 370 380 390 400 410 420 110 120 130 140 FLJ001 RETEVYACIE-NEDGSSPTAKQSPLSQERPHRFEDDGELNLVYENL : .: . . ::. . : : :: :: .: KIAA07 RSPVPPSCQSPSPQRRSPVPPSCPAPQPRPPPPPPPGERTLAERAYAKPPSHHVKAGFQG 430 440 450 460 470 480 KIAA07 RRSYSELAEGAAYAGASPPWLQAEAATLPKPRAYGSELYGPGRPLSPRRAFEGIRLRFEK 490 500 510 520 530 540 >>KIAA0232 ( 1402 res) pf00983 (1402 aa) initn: 38 init1: 38 opt: 88 Z-score: 90.4 bits: 26.0 E(): 7.7 Smith-Waterman score: 88; 25.472% identity (56.604% similar) in 106 aa overlap (33-130:172-275) 10 20 30 40 50 60 FLJ001 GTYYCSVHWPHSTVRGSGTFILVRDAGYREPPQSPQKLLLF-GFTGLLSVLSVVGTALLL :: . : . . .: : . . . KIAA02 CSRLKDLQSKQEEKIHKKLEGSPSPEAELSPPAKDQVEMYYEAFPPLSEKPVCLQEIMTV 150 160 170 180 190 200 70 80 90 100 110 FLJ001 WNKKRMRGPGKDPTRKCPDPRSA--SSPKQHPSESVYTALQRRETEVYACI-ENEDGSSP :::... . ... . . : :. ::::. ::: : ..: .:: . . :. ...: KIAA02 WNKSKVCSYSSSSSSSTAPPASTDTSSPKDCNSESEVT--KERSSEVPTTVHEKTQSKSK 210 220 230 240 250 120 130 140 FLJ001 TAKQSPLS----QERPHRFEDDGELNLVYENL . :.. .: .:.: KIAA02 NEKENKFSNGTIEEKPALYKKQIRHKPEGKIRPRSWSSGSSEAGSSSSGNQGELKASMKY 260 270 280 290 300 310 146 residues in 1 query sequences 2210848 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:42:37 2009 done: Fri Feb 27 10:42:38 2009 Total Scan time: 0.330 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]