# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sh07162.fasta.nr -Q ../query/FLJ00373.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00373, 114 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826273 sequences Expectation_n fit: rho(ln(x))= 4.7253+/-0.000177; mu= 7.1793+/- 0.010 mean_var=57.6289+/-11.295, 0's: 35 Z-trim: 42 B-trim: 0 in 0/68 Lambda= 0.168948 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|21748592|dbj|BAC03433.1| FLJ00373 protein [Homo ( 114) 755 191.3 2.6e-47 gi|47077787|dbj|BAD18769.1| unnamed protein produc ( 228) 450 117.2 1.1e-24 gi|119603131|gb|EAW82725.1| peroxisomal LON protea ( 442) 450 117.4 1.8e-24 gi|14042513|dbj|BAB55278.1| unnamed protein produc ( 581) 450 117.5 2.3e-24 gi|114205472|gb|AAI10435.1| LONP2 protein [Homo sa ( 598) 450 117.5 2.3e-24 gi|119603129|gb|EAW82723.1| peroxisomal LON protea ( 670) 450 117.5 2.6e-24 gi|21739707|emb|CAD38889.1| hypothetical protein [ ( 715) 450 117.5 2.7e-24 gi|219519934|gb|AAI43247.1| Unknown (protein for M ( 808) 450 117.5 3e-24 gi|22760442|dbj|BAC11201.1| unnamed protein produc ( 852) 450 117.6 3.1e-24 gi|74727668|sp|Q86WA8.1|LONP2_HUMAN RecName: Full= ( 852) 450 117.6 3.1e-24 gi|75070538|sp|Q5R6M5.1|LONP2_PONAB RecName: Full= ( 852) 450 117.6 3.1e-24 gi|193786557|dbj|BAG51340.1| unnamed protein produ ( 571) 445 116.2 5.2e-24 gi|193785286|dbj|BAG54439.1| unnamed protein produ ( 581) 444 116.0 6.3e-24 gi|38197066|gb|AAH04234.2| LONP2 protein [Homo sap ( 204) 439 114.5 6.3e-24 gi|118096328|ref|XP_414106.2| PREDICTED: similar t ( 852) 442 115.6 1.2e-23 gi|149411829|ref|XP_001507605.1| PREDICTED: hypoth ( 803) 439 114.9 1.9e-23 gi|194208569|ref|XP_001914749.1| PREDICTED: lon pe ( 825) 439 114.9 1.9e-23 gi|73949875|ref|XP_535313.2| PREDICTED: similar to ( 852) 439 114.9 2e-23 gi|26344515|dbj|BAC35908.1| unnamed protein produc ( 432) 435 113.7 2.3e-23 gi|148679080|gb|EDL11027.1| RIKEN cDNA 1300002A08, ( 515) 435 113.8 2.6e-23 gi|149032634|gb|EDL87504.1| rCG44284, isoform CRA_ ( 515) 435 113.8 2.6e-23 gi|148679081|gb|EDL11028.1| RIKEN cDNA 1300002A08, ( 526) 435 113.8 2.7e-23 gi|75516372|gb|AAI03719.1| Lonp2 protein [Rattus n ( 556) 435 113.8 2.8e-23 gi|74219798|dbj|BAE40488.1| unnamed protein produc ( 710) 435 113.9 3.4e-23 gi|74191601|dbj|BAE30373.1| unnamed protein produc ( 710) 435 113.9 3.4e-23 gi|74222955|dbj|BAE40624.1| unnamed protein produc ( 852) 435 113.9 3.9e-23 gi|81906099|sp|Q9DBN5.1|LONP2_MOUSE RecName: Full= ( 852) 435 113.9 3.9e-23 gi|147648011|sp|Q3MIB4.2|LONP2_RAT RecName: Full=P ( 852) 435 113.9 3.9e-23 gi|122140100|sp|Q3SX23.1|LONP2_BOVIN RecName: Full ( 852) 433 113.4 5.5e-23 gi|123896305|sp|Q2TAF8.1|LONP2_XENLA RecName: Full ( 856) 429 112.4 1.1e-22 gi|189531523|ref|XP_001918486.1| PREDICTED: hypoth ( 840) 407 107.1 4.4e-21 gi|82232440|sp|Q5PQY6.1|LONP2_DANRE RecName: Full= ( 840) 407 107.1 4.4e-21 gi|210127765|gb|EEA75446.1| hypothetical protein B ( 853) 397 104.6 2.4e-20 gi|210087692|gb|EEA36057.1| hypothetical protein B ( 853) 393 103.7 4.7e-20 gi|115926567|ref|XP_001184993.1| PREDICTED: hypoth ( 361) 348 92.5 4.8e-17 gi|115760602|ref|XP_790138.2| PREDICTED: hypotheti ( 391) 348 92.5 5.1e-17 gi|215500198|gb|EEC09692.1| protease, putative [Ix ( 832) 328 87.8 2.7e-15 gi|190585496|gb|EDV25564.1| hypothetical protein T ( 655) 323 86.5 5.2e-15 gi|198415695|ref|XP_002122498.1| PREDICTED: simila ( 660) 298 80.4 3.6e-13 gi|161163861|emb|CAN95166.1| ATP-dependent proteas ( 817) 289 78.3 1.9e-12 gi|115637984|ref|XP_001201074.1| PREDICTED: hypoth ( 59) 276 74.4 2.1e-12 gi|149821043|gb|EDM80449.1| ATP-dependent protease ( 803) 288 78.1 2.3e-12 gi|149821312|gb|EDM80714.1| ATP-dependent protease ( 794) 281 76.3 7.4e-12 gi|116229259|gb|ABJ87968.1| ATP-dependent protease ( 790) 277 75.4 1.4e-11 gi|162683041|gb|EDQ69455.1| predicted protein [Phy ( 554) 275 74.8 1.5e-11 gi|162685854|gb|EDQ72247.1| predicted protein [Phy ( 557) 275 74.8 1.5e-11 gi|3913996|sp|O04979.1|LONH1_SPIOL RecName: Full=L ( 875) 277 75.4 1.6e-11 gi|93455214|gb|EAT05430.1| Peptidase S16, ATP-depe ( 802) 276 75.1 1.7e-11 gi|159891184|gb|ABX04264.1| ATP-dependent protease ( 815) 276 75.1 1.7e-11 gi|4666311|dbj|BAA77218.1| LON protease homologue ( 222) 269 73.1 2e-11 >>gi|21748592|dbj|BAC03433.1| FLJ00373 protein [Homo sap (114 aa) initn: 755 init1: 755 opt: 755 Z-score: 1005.6 bits: 191.3 E(): 2.6e-47 Smith-Waterman score: 755; 100.000% identity (100.000% similar) in 114 aa overlap (1-114:1-114) 10 20 30 40 50 60 FLJ003 VAEVFCGVSRLLQDCVVSVTFSICQPNSDHSSSFKVSQRLSQPGVAIGLAWTPLGGEIMF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 VAEVFCGVSRLLQDCVVSVTFSICQPNSDHSSSFKVSQRLSQPGVAIGLAWTPLGGEIMF 10 20 30 40 50 60 70 80 90 100 110 FLJ003 VEASRMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYQLTNGRSLHPARQA :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 VEASRMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYQLTNGRSLHPARQA 70 80 90 100 110 >>gi|47077787|dbj|BAD18769.1| unnamed protein product [H (228 aa) initn: 450 init1: 450 opt: 450 Z-score: 599.5 bits: 117.2 E(): 1.1e-24 Smith-Waterman score: 450; 98.571% identity (100.000% similar) in 70 aa overlap (35-104:22-91) 10 20 30 40 50 60 FLJ003 FCGVSRLLQDCVVSVTFSICQPNSDHSSSFKVSQRLSQPGVAIGLAWTPLGGEIMFVEAS .::::::::::::::::::::::::::::: gi|470 MPILIDFHALKDILGPPMYEMEVSQRLSQPGVAIGLAWTPLGGEIMFVEAS 10 20 30 40 50 70 80 90 100 110 FLJ003 RMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYQLTNGRSLHPARQA :::::::::::::::::::::::::::::::::::::::: gi|470 RMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYQLTNAFGSFDLLDNTDIHLHFPAG 60 70 80 90 100 110 gi|470 AVTKDGPSAGVTIVTCLASLFSGRLVRSDVAMTGEITLRGLVLPVGGIKDKVLAAHRAGL 120 130 140 150 160 170 >>gi|119603131|gb|EAW82725.1| peroxisomal LON protease l (442 aa) initn: 450 init1: 450 opt: 450 Z-score: 595.4 bits: 117.4 E(): 1.8e-24 Smith-Waterman score: 450; 98.571% identity (100.000% similar) in 70 aa overlap (35-104:236-305) 10 20 30 40 50 60 FLJ003 FCGVSRLLQDCVVSVTFSICQPNSDHSSSFKVSQRLSQPGVAIGLAWTPLGGEIMFVEAS .::::::::::::::::::::::::::::: gi|119 TTDLALPPEMPILIDFHALKDILGPPMYEMEVSQRLSQPGVAIGLAWTPLGGEIMFVEAS 210 220 230 240 250 260 70 80 90 100 110 FLJ003 RMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYQLTNGRSLHPARQA :::::::::::::::::::::::::::::::::::::::: gi|119 RMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYQLTNAFGSFDLLDNTDIHLHFPAG 270 280 290 300 310 320 gi|119 AVTKDGPSAGVTIVTCLASLFSGRLVRSDVAMTGEITLRGLVLPVGGIKDKVLAAHRAGL 330 340 350 360 370 380 >>gi|14042513|dbj|BAB55278.1| unnamed protein product [H (581 aa) initn: 450 init1: 450 opt: 450 Z-score: 593.7 bits: 117.5 E(): 2.3e-24 Smith-Waterman score: 450; 98.571% identity (100.000% similar) in 70 aa overlap (35-104:375-444) 10 20 30 40 50 60 FLJ003 FCGVSRLLQDCVVSVTFSICQPNSDHSSSFKVSQRLSQPGVAIGLAWTPLGGEIMFVEAS .::::::::::::::::::::::::::::: gi|140 TTDLALPPEMPILIDFHALKDILGPPMYEMEVSQRLSQPGVAIGLAWTPLGGEIMFVEAS 350 360 370 380 390 400 70 80 90 100 110 FLJ003 RMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYQLTNGRSLHPARQA :::::::::::::::::::::::::::::::::::::::: gi|140 RMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYQLTNAFGSFDLLDNTDIHLHFPAG 410 420 430 440 450 460 gi|140 AVTKDGPSAGVTIVTCLASLFSGRLVRSDVAMTGEITLRGLVLPVGGIKDKVLAAHRAGL 470 480 490 500 510 520 >>gi|114205472|gb|AAI10435.1| LONP2 protein [Homo sapien (598 aa) initn: 450 init1: 450 opt: 450 Z-score: 593.5 bits: 117.5 E(): 2.3e-24 Smith-Waterman score: 450; 98.571% identity (100.000% similar) in 70 aa overlap (35-104:392-461) 10 20 30 40 50 60 FLJ003 FCGVSRLLQDCVVSVTFSICQPNSDHSSSFKVSQRLSQPGVAIGLAWTPLGGEIMFVEAS .::::::::::::::::::::::::::::: gi|114 TTDLALPPEMPILIDFHALKDILGPPMYEMEVSQRLSQPGVAIGLAWTPLGGEIMFVEAS 370 380 390 400 410 420 70 80 90 100 110 FLJ003 RMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYQLTNGRSLHPARQA :::::::::::::::::::::::::::::::::::::::: gi|114 RMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYQLTNAFGSFDLLDNTDIHLHFPAG 430 440 450 460 470 480 gi|114 AVTKDGPSAGVTIVTCLASLFSGRLVRSDVAMTGEITLRGLVLPVGGIKDKVLAAHRAGL 490 500 510 520 530 540 >>gi|119603129|gb|EAW82723.1| peroxisomal LON protease l (670 aa) initn: 450 init1: 450 opt: 450 Z-score: 592.8 bits: 117.5 E(): 2.6e-24 Smith-Waterman score: 450; 98.571% identity (100.000% similar) in 70 aa overlap (35-104:464-533) 10 20 30 40 50 60 FLJ003 FCGVSRLLQDCVVSVTFSICQPNSDHSSSFKVSQRLSQPGVAIGLAWTPLGGEIMFVEAS .::::::::::::::::::::::::::::: gi|119 TTDLALPPEMPILIDFHALKDILGPPMYEMEVSQRLSQPGVAIGLAWTPLGGEIMFVEAS 440 450 460 470 480 490 70 80 90 100 110 FLJ003 RMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYQLTNGRSLHPARQA :::::::::::::::::::::::::::::::::::::::: gi|119 RMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYQLTNAFGSFDLLDNTDIHLHFPAG 500 510 520 530 540 550 gi|119 AVTKDGPSAGVTIVTCLASLFSGRLVRSDVAMTGEITLRGLVLPVGGIKDKVLAAHRAGL 560 570 580 590 600 610 >>gi|21739707|emb|CAD38889.1| hypothetical protein [Homo (715 aa) initn: 450 init1: 450 opt: 450 Z-score: 592.4 bits: 117.5 E(): 2.7e-24 Smith-Waterman score: 450; 98.571% identity (100.000% similar) in 70 aa overlap (35-104:509-578) 10 20 30 40 50 60 FLJ003 FCGVSRLLQDCVVSVTFSICQPNSDHSSSFKVSQRLSQPGVAIGLAWTPLGGEIMFVEAS .::::::::::::::::::::::::::::: gi|217 TTDLALPPEMPILIDFHALKDILGPPMYEMEVSQRLSQPGVAIGLAWTPLGGEIMFVEAS 480 490 500 510 520 530 70 80 90 100 110 FLJ003 RMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYQLTNGRSLHPARQA :::::::::::::::::::::::::::::::::::::::: gi|217 RMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYQLTNAFGSFDLLDNTDIHLHFPAG 540 550 560 570 580 590 gi|217 AVTKDGPSAGVTIVTCLASLFSGRLVRSDVAMTGEITLRGLVLPVGGIKDKVLAAHRAGL 600 610 620 630 640 650 >>gi|219519934|gb|AAI43247.1| Unknown (protein for MGC:1 (808 aa) initn: 450 init1: 450 opt: 450 Z-score: 591.7 bits: 117.5 E(): 3e-24 Smith-Waterman score: 450; 98.571% identity (100.000% similar) in 70 aa overlap (35-104:602-671) 10 20 30 40 50 60 FLJ003 FCGVSRLLQDCVVSVTFSICQPNSDHSSSFKVSQRLSQPGVAIGLAWTPLGGEIMFVEAS .::::::::::::::::::::::::::::: gi|219 TTDLALPPEMPILIDFHALKDILGPPMYEMEVSQRLSQPGVAIGLAWTPLGGEIMFVEAS 580 590 600 610 620 630 70 80 90 100 110 FLJ003 RMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYQLTNGRSLHPARQA :::::::::::::::::::::::::::::::::::::::: gi|219 RMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYQLTNAFGSFDLLDNTDIHLHFPAG 640 650 660 670 680 690 gi|219 AVTKDGPSAGVTIVTCLASLFSGRLVRSDVAMTGEITLRGLVLPVGGIKDKVLAAHRAGL 700 710 720 730 740 750 >>gi|22760442|dbj|BAC11201.1| unnamed protein product [H (852 aa) initn: 450 init1: 450 opt: 450 Z-score: 591.3 bits: 117.6 E(): 3.1e-24 Smith-Waterman score: 450; 98.571% identity (100.000% similar) in 70 aa overlap (35-104:646-715) 10 20 30 40 50 60 FLJ003 FCGVSRLLQDCVVSVTFSICQPNSDHSSSFKVSQRLSQPGVAIGLAWTPLGGEIMFVEAS .::::::::::::::::::::::::::::: gi|227 TTDLALPPEMPIFIDFHALKDILGPPMYEMEVSQRLSQPGVAIGLAWTPLGGEIMFVEAS 620 630 640 650 660 670 70 80 90 100 110 FLJ003 RMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYQLTNGRSLHPARQA :::::::::::::::::::::::::::::::::::::::: gi|227 RMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYQLTNAFGSFDLLDNTDIHLHFPAG 680 690 700 710 720 730 gi|227 AVTKDGPSAGVTIVTCLASLFSGRLVRSDVAMTGEITLRGLVLPVGGIKDKVLAAHRAGL 740 750 760 770 780 790 >>gi|74727668|sp|Q86WA8.1|LONP2_HUMAN RecName: Full=Pero (852 aa) initn: 450 init1: 450 opt: 450 Z-score: 591.3 bits: 117.6 E(): 3.1e-24 Smith-Waterman score: 450; 98.571% identity (100.000% similar) in 70 aa overlap (35-104:646-715) 10 20 30 40 50 60 FLJ003 FCGVSRLLQDCVVSVTFSICQPNSDHSSSFKVSQRLSQPGVAIGLAWTPLGGEIMFVEAS .::::::::::::::::::::::::::::: gi|747 TTDLALPPEMPILIDFHALKDILGPPMYEMEVSQRLSQPGVAIGLAWTPLGGEIMFVEAS 620 630 640 650 660 670 70 80 90 100 110 FLJ003 RMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYQLTNGRSLHPARQA :::::::::::::::::::::::::::::::::::::::: gi|747 RMDGEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYQLTNAFGSFDLLDNTDIHLHFPAG 680 690 700 710 720 730 gi|747 AVTKDGPSAGVTIVTCLASLFSGRLVRSDVAMTGEITLRGLVLPVGGIKDKVLAAHRAGL 740 750 760 770 780 790 114 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 22:34:13 2009 done: Fri Feb 27 22:37:57 2009 Total Scan time: 533.270 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]